Wall clock time and date at job start Tue Mar 31 2020 21:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52997 * 109.47134 * 2 1 4 4 H 1.09001 * 109.46922 * 305.00135 * 3 2 1 5 5 C 1.53006 * 109.47164 * 64.99887 * 3 2 1 6 6 C 1.52997 * 109.47232 * 184.99986 * 3 2 1 7 7 O 1.42899 * 109.47457 * 175.00226 * 6 3 2 8 8 N 1.41592 * 114.00173 * 179.97438 * 7 6 3 9 9 C 1.34783 * 119.99844 * 179.97438 * 8 7 6 10 10 O 1.21359 * 120.00167 * 359.97438 * 9 8 7 11 11 C 1.49308 * 119.99606 * 180.02562 * 9 8 7 12 12 O 1.21395 * 120.00232 * 359.97438 * 11 9 8 13 13 N 1.34783 * 119.99606 * 179.97438 * 11 9 8 14 14 C 1.39197 * 119.99931 * 179.97438 * 13 11 9 15 15 C 1.36223 * 126.26989 * 359.69086 * 14 13 11 16 16 C 1.39695 * 107.85608 * 179.84307 * 15 14 13 17 17 C 1.50702 * 125.76917 * 180.13053 * 16 15 14 18 18 N 1.30852 * 108.45841 * 0.42169 * 16 15 14 19 19 N 1.35847 * 126.27348 * 179.97438 * 14 13 11 20 20 C 1.46504 * 126.09576 * 359.97438 * 19 14 13 21 21 C 1.50703 * 109.46833 * 90.00248 * 20 19 14 22 22 H 1.07994 * 120.00094 * 0.02562 * 21 20 19 23 23 C 1.37877 * 119.99579 * 179.97438 * 21 20 19 24 24 N 1.31517 * 120.00193 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99824 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46830 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47083 * 120.00088 * 25 23 21 28 28 H 1.48502 * 109.46770 * 240.00283 * 25 23 21 29 29 H 1.08996 * 109.46870 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46772 * 299.99985 * 1 2 3 31 31 H 1.08998 * 109.46554 * 60.00185 * 1 2 3 32 32 H 1.09000 * 109.46772 * 240.00015 * 2 1 3 33 33 H 1.08994 * 109.46772 * 120.00268 * 2 1 3 34 34 H 1.09001 * 109.47002 * 59.99738 * 5 3 2 35 35 H 1.08993 * 109.46955 * 180.02562 * 5 3 2 36 36 H 1.09000 * 109.47050 * 300.00004 * 5 3 2 37 37 H 1.09002 * 109.47196 * 295.00207 * 6 3 2 38 38 H 1.09004 * 109.46881 * 54.99722 * 6 3 2 39 39 H 0.97000 * 120.00475 * 0.02562 * 8 7 6 40 40 H 0.97000 * 119.99681 * 359.97438 * 13 11 9 41 41 H 1.08000 * 126.07070 * 359.96684 * 15 14 13 42 42 H 1.08999 * 109.46993 * 270.31864 * 17 16 15 43 43 H 1.08996 * 109.47054 * 30.31874 * 17 16 15 44 44 H 1.08999 * 109.46659 * 150.31991 * 17 16 15 45 45 H 1.09004 * 109.46949 * 210.00123 * 20 19 14 46 46 H 1.08999 * 109.47306 * 329.99802 * 20 19 14 47 47 H 0.96997 * 120.00182 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1266 1.3074 6 6 3.5649 1.4443 -0.1257 7 8 4.0316 2.7899 -0.2428 8 7 5.4377 2.9032 -0.3647 9 6 6.0081 4.1186 -0.4831 10 8 5.3165 5.1158 -0.4858 11 6 7.4908 4.2380 -0.6122 12 8 8.1826 3.2405 -0.6100 13 7 8.0611 5.4534 -0.7312 14 6 9.4434 5.5648 -0.8510 15 6 10.3373 4.5369 -0.8571 16 6 11.6156 5.0817 -1.0002 17 6 12.9040 4.3020 -1.0586 18 7 11.5058 6.3838 -1.0687 19 7 10.1488 6.7189 -0.9779 20 6 9.5897 8.0726 -1.0138 21 6 9.5132 8.6218 0.3875 22 1 9.8480 8.0226 1.2213 23 6 9.0169 9.8896 0.6049 24 7 8.6097 10.6195 -0.4106 25 14 8.9214 10.5701 2.3419 26 1 9.4362 9.5581 3.2989 27 1 9.7424 11.8039 2.4360 28 1 7.5090 10.8890 2.6716 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.0699 1.5875 2.1492 35 1 1.9982 3.1543 1.3072 36 1 0.5490 2.1253 1.3969 37 1 4.0030 0.9835 0.7596 38 1 3.8571 0.8800 -1.0113 39 1 5.9905 2.1061 -0.3636 40 1 7.5083 6.2504 -0.7333 41 1 10.0996 3.4871 -0.7691 42 1 13.2979 4.1752 -0.0503 43 1 12.7168 3.3237 -1.5013 44 1 13.6289 4.8433 -1.6665 45 1 10.2289 8.7137 -1.6209 46 1 8.5900 8.0415 -1.4470 47 1 8.2608 11.5115 -0.2577 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815713963.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:59 Heat of formation + Delta-G solvation = 3.335700 kcal Electronic energy + Delta-G solvation = -28732.825903 eV Core-core repulsion = 24533.779427 eV Total energy + Delta-G solvation = -4199.046477 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.19704 -40.10303 -38.81287 -38.03706 -36.29189 -35.01968 -33.83787 -32.48288 -32.08426 -30.18808 -29.28684 -28.53617 -27.13329 -26.08296 -25.04818 -23.70853 -22.86311 -21.44108 -20.56295 -19.98418 -19.64000 -18.61009 -17.69817 -16.84280 -16.58563 -16.46284 -16.40012 -15.86995 -15.25610 -15.17104 -14.84930 -14.55077 -14.43812 -14.19054 -14.00878 -13.75097 -13.27958 -12.99772 -12.80525 -12.66593 -12.57999 -12.43932 -12.18993 -12.10691 -11.90189 -11.72233 -11.53303 -11.45682 -11.30216 -11.10299 -11.06542 -10.99831 -10.87963 -10.60055 -10.32563 -9.91645 -9.79371 -9.61996 -9.28235 -8.69546 -8.00897 -7.61340 -6.30819 -4.39456 1.15127 1.15278 2.57225 2.77906 3.16683 3.19532 3.27453 3.32660 3.50035 3.62521 3.99987 4.21285 4.27908 4.29776 4.32478 4.56791 4.74964 4.86071 4.99025 5.02737 5.14699 5.17096 5.25413 5.26801 5.49808 5.52218 5.54605 5.58708 5.67938 5.87016 5.96858 5.98291 5.99949 6.03415 6.11825 6.24547 6.33392 6.45445 6.70627 6.81972 6.99988 7.30913 7.43358 7.50034 7.64075 7.80064 7.81304 8.01651 8.53335 8.68883 9.28374 10.76680 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010556 B = 0.002550 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.893689 B =10977.536135 C =13109.708322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.084 4.084 4 H 0.085 0.915 5 C -0.152 4.152 6 C 0.032 3.968 7 O -0.132 6.132 8 N -0.572 5.572 9 C 0.526 3.474 10 O -0.488 6.488 11 C 0.528 3.472 12 O -0.496 6.496 13 N -0.601 5.601 14 C 0.292 3.708 15 C -0.285 4.285 16 C 0.050 3.950 17 C -0.063 4.063 18 N -0.275 5.275 19 N -0.339 5.339 20 C 0.254 3.746 21 C -0.542 4.542 22 H 0.066 0.934 23 C 0.067 3.933 24 N -0.888 5.888 25 Si 0.907 3.093 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.420 0.580 40 H 0.431 0.569 41 H 0.163 0.837 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.059 0.941 46 H 0.047 0.953 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.061 -21.921 -0.377 24.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.104 4.104 4 H 0.103 0.897 5 C -0.209 4.209 6 C -0.046 4.046 7 O -0.136 6.136 8 N -0.275 5.275 9 C 0.307 3.693 10 O -0.359 6.359 11 C 0.308 3.692 12 O -0.370 6.370 13 N -0.250 5.250 14 C 0.070 3.930 15 C -0.317 4.317 16 C -0.115 4.115 17 C -0.121 4.121 18 N -0.101 5.101 19 N -0.125 5.125 20 C 0.136 3.864 21 C -0.581 4.581 22 H 0.084 0.916 23 C -0.137 4.137 24 N -0.525 5.525 25 Si 0.734 3.266 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.205 1.205 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.262 0.738 40 H 0.270 0.730 41 H 0.181 0.819 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.077 0.923 46 H 0.065 0.935 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.784 -20.293 -0.550 22.987 hybrid contribution -0.800 -0.315 1.037 1.348 sum -11.585 -20.608 0.487 23.646 Atomic orbital electron populations 1.21804 0.95062 1.01869 1.02341 1.21510 0.96613 0.94832 1.02455 1.21140 0.91306 0.97490 1.00414 0.89711 1.21905 1.01639 1.01428 0.95940 1.23232 0.96013 0.83721 1.01618 1.90611 1.00528 1.26182 1.96291 1.46924 0.96442 1.09100 1.75077 1.19720 0.87981 0.82755 0.78891 1.90864 1.63022 1.35633 1.46393 1.19279 0.87269 0.83612 0.79064 1.90718 1.62946 1.36054 1.47292 1.42157 1.05064 1.09875 1.67866 1.17915 0.81697 0.89359 1.03992 1.21281 0.90240 0.99497 1.20701 1.22023 0.95878 0.91681 1.01929 1.20033 0.91785 0.98045 1.02268 1.77382 0.93773 1.14006 1.24919 1.49611 1.02684 1.06273 1.53884 1.19731 0.94099 0.73189 0.99377 1.21345 1.43987 1.00893 0.91840 0.91584 1.24939 0.94413 0.96205 0.98112 1.69919 1.41183 1.10882 1.30547 0.86287 0.77953 0.79000 0.83402 1.19556 1.20546 1.20540 0.92495 0.92175 0.92496 0.91598 0.91513 0.92553 0.91574 0.92012 0.91572 0.91618 0.73751 0.73016 0.81935 0.91212 0.91068 0.91439 0.92265 0.93516 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.67 37.16 0.36 -0.36 16 2 C -0.12 -0.57 5.40 -26.73 -0.14 -0.72 16 3 C -0.08 -0.56 2.63 -90.62 -0.24 -0.79 16 4 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 5 C -0.15 -1.11 8.85 37.16 0.33 -0.78 16 6 C 0.03 0.23 5.61 37.16 0.21 0.44 16 7 O -0.13 -1.54 10.64 -29.65 -0.32 -1.86 16 8 N -0.57 -6.69 6.38 30.87 0.20 -6.50 16 9 C 0.53 7.86 8.03 -11.65 -0.09 7.77 16 10 O -0.49 -8.86 16.88 -12.69 -0.21 -9.08 16 11 C 0.53 8.38 7.85 -11.65 -0.09 8.29 16 12 O -0.50 -7.89 13.60 5.46 0.07 -7.82 16 13 N -0.60 -10.97 5.40 -11.79 -0.06 -11.03 16 14 C 0.29 6.06 7.68 -152.86 -1.17 4.89 16 15 C -0.29 -5.52 9.58 -39.76 -0.38 -5.90 16 16 C 0.05 0.95 7.20 -82.46 -0.59 0.36 16 17 C -0.06 -0.87 10.44 36.01 0.38 -0.49 16 18 N -0.28 -6.24 12.56 33.64 0.42 -5.82 16 19 N -0.34 -7.88 3.62 -61.46 -0.22 -8.10 16 20 C 0.25 6.40 6.02 -5.19 -0.03 6.37 16 21 C -0.54 -14.79 9.39 -34.44 -0.32 -15.11 16 22 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 23 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 24 N -0.89 -24.83 13.29 55.43 0.74 -24.10 16 25 Si 0.91 21.21 29.54 -169.99 -5.02 16.19 16 26 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.29 6.56 -51.93 -0.34 -0.06 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.62 7.82 -51.93 -0.41 0.21 16 36 H 0.06 0.39 6.56 -51.93 -0.34 0.05 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.42 3.73 8.01 -40.82 -0.33 3.41 16 40 H 0.43 7.95 7.46 -40.82 -0.30 7.65 16 41 H 0.16 2.91 5.83 -52.49 -0.31 2.60 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.06 1.59 8.14 -51.93 -0.42 1.17 16 46 H 0.05 1.16 7.52 -51.93 -0.39 0.77 16 47 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 400.63 15.07 6.04 6.04 Total: -1.00 -32.29 400.63 -7.30 -39.59 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -7.03 Total: 6.78 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -1.90 Total: 5.70 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: 1.07 Total: -55.55 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.46 Total: -18.75 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.29 -7.30 -39.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815713963.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.926 kcal (2) G-P(sol) polarization free energy of solvation -32.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds