Wall clock time and date at job start Tue Mar 31 2020 21:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52997 * 109.47134 * 2 1 4 4 H 1.09001 * 109.46922 * 305.00135 * 3 2 1 5 5 C 1.53006 * 109.47164 * 64.99887 * 3 2 1 6 6 C 1.52997 * 109.47232 * 184.99986 * 3 2 1 7 7 O 1.42899 * 109.47457 * 175.00226 * 6 3 2 8 8 N 1.41592 * 114.00173 * 179.97438 * 7 6 3 9 9 C 1.34783 * 119.99844 * 179.97438 * 8 7 6 10 10 O 1.21359 * 120.00167 * 359.97438 * 9 8 7 11 11 C 1.49308 * 119.99606 * 180.02562 * 9 8 7 12 12 O 1.21395 * 120.00232 * 359.97438 * 11 9 8 13 13 N 1.34783 * 119.99606 * 179.97438 * 11 9 8 14 14 C 1.39197 * 119.99931 * 179.97438 * 13 11 9 15 15 C 1.36223 * 126.26989 * 359.69086 * 14 13 11 16 16 C 1.39695 * 107.85608 * 179.84307 * 15 14 13 17 17 C 1.50702 * 125.76917 * 180.13053 * 16 15 14 18 18 N 1.30852 * 108.45841 * 0.42169 * 16 15 14 19 19 N 1.35847 * 126.27348 * 179.97438 * 14 13 11 20 20 C 1.46504 * 126.09576 * 359.97438 * 19 14 13 21 21 C 1.50703 * 109.46833 * 90.00248 * 20 19 14 22 22 H 1.07994 * 120.00094 * 0.02562 * 21 20 19 23 23 C 1.37877 * 119.99579 * 179.97438 * 21 20 19 24 24 N 1.31517 * 120.00193 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99824 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46830 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47083 * 120.00088 * 25 23 21 28 28 H 1.48502 * 109.46770 * 240.00283 * 25 23 21 29 29 H 1.08996 * 109.46870 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46772 * 299.99985 * 1 2 3 31 31 H 1.08998 * 109.46554 * 60.00185 * 1 2 3 32 32 H 1.09000 * 109.46772 * 240.00015 * 2 1 3 33 33 H 1.08994 * 109.46772 * 120.00268 * 2 1 3 34 34 H 1.09001 * 109.47002 * 59.99738 * 5 3 2 35 35 H 1.08993 * 109.46955 * 180.02562 * 5 3 2 36 36 H 1.09000 * 109.47050 * 300.00004 * 5 3 2 37 37 H 1.09002 * 109.47196 * 295.00207 * 6 3 2 38 38 H 1.09004 * 109.46881 * 54.99722 * 6 3 2 39 39 H 0.97000 * 120.00475 * 0.02562 * 8 7 6 40 40 H 0.97000 * 119.99681 * 359.97438 * 13 11 9 41 41 H 1.08000 * 126.07070 * 359.96684 * 15 14 13 42 42 H 1.08999 * 109.46993 * 270.31864 * 17 16 15 43 43 H 1.08996 * 109.47054 * 30.31874 * 17 16 15 44 44 H 1.08999 * 109.46659 * 150.31991 * 17 16 15 45 45 H 1.09004 * 109.46949 * 210.00123 * 20 19 14 46 46 H 1.08999 * 109.47306 * 329.99802 * 20 19 14 47 47 H 0.96997 * 120.00182 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1266 1.3074 6 6 3.5649 1.4443 -0.1257 7 8 4.0316 2.7899 -0.2428 8 7 5.4377 2.9032 -0.3647 9 6 6.0081 4.1186 -0.4831 10 8 5.3165 5.1158 -0.4858 11 6 7.4908 4.2380 -0.6122 12 8 8.1826 3.2405 -0.6100 13 7 8.0611 5.4534 -0.7312 14 6 9.4434 5.5648 -0.8510 15 6 10.3373 4.5369 -0.8571 16 6 11.6156 5.0817 -1.0002 17 6 12.9040 4.3020 -1.0586 18 7 11.5058 6.3838 -1.0687 19 7 10.1488 6.7189 -0.9779 20 6 9.5897 8.0726 -1.0138 21 6 9.5132 8.6218 0.3875 22 1 9.8480 8.0226 1.2213 23 6 9.0169 9.8896 0.6049 24 7 8.6097 10.6195 -0.4106 25 14 8.9214 10.5701 2.3419 26 1 9.4362 9.5581 3.2989 27 1 9.7424 11.8039 2.4360 28 1 7.5090 10.8890 2.6716 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.0699 1.5875 2.1492 35 1 1.9982 3.1543 1.3072 36 1 0.5490 2.1253 1.3969 37 1 4.0030 0.9835 0.7596 38 1 3.8571 0.8800 -1.0113 39 1 5.9905 2.1061 -0.3636 40 1 7.5083 6.2504 -0.7333 41 1 10.0996 3.4871 -0.7691 42 1 13.2979 4.1752 -0.0503 43 1 12.7168 3.3237 -1.5013 44 1 13.6289 4.8433 -1.6665 45 1 10.2289 8.7137 -1.6209 46 1 8.5900 8.0415 -1.4470 47 1 8.2608 11.5115 -0.2577 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815713963.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:59 Heat of formation + Delta-G solvation = -16.980380 kcal Electronic energy + Delta-G solvation = -28733.706875 eV Core-core repulsion = 24533.779427 eV Total energy + Delta-G solvation = -4199.927448 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.66140 -41.48016 -39.90539 -39.01684 -37.05558 -36.42158 -35.72310 -33.88723 -33.44392 -30.91751 -30.69164 -30.07079 -27.83551 -27.76751 -26.32096 -24.74190 -24.22027 -22.74903 -21.53674 -21.28012 -20.76227 -19.75292 -19.01330 -18.79183 -17.97718 -17.82130 -17.52645 -16.87255 -16.65418 -16.30890 -15.99955 -15.76192 -15.69299 -15.46092 -14.95470 -14.70394 -14.61168 -14.44925 -14.06779 -13.96409 -13.60630 -13.44127 -13.23954 -13.12841 -13.01831 -12.93660 -12.85792 -12.71827 -12.70224 -12.32949 -12.10290 -12.07046 -11.87685 -11.71912 -11.61098 -11.47489 -11.41662 -10.97493 -10.77828 -10.26379 -9.69322 -9.19943 -8.38173 -6.55433 -0.14748 0.06844 1.05405 1.34688 1.35871 1.40708 1.49569 1.78779 2.05207 2.08274 2.32404 2.83304 2.92735 3.34058 3.75224 3.79548 3.80849 4.03787 4.11855 4.30827 4.34090 4.45936 4.52747 4.62064 4.66022 4.67951 4.70374 4.78823 4.83082 4.90418 4.94662 5.04513 5.08617 5.15968 5.17143 5.19334 5.20476 5.35626 5.44967 5.49033 5.50334 5.59749 5.74324 5.89580 5.93427 6.08349 6.40606 6.58266 6.74875 6.95309 7.16451 8.68845 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010556 B = 0.002550 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.893689 B =10977.536135 C =13109.708322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C -0.081 4.081 4 H 0.075 0.925 5 C -0.152 4.152 6 C 0.023 3.977 7 O -0.153 6.153 8 N -0.550 5.550 9 C 0.533 3.467 10 O -0.526 6.526 11 C 0.537 3.463 12 O -0.491 6.491 13 N -0.610 5.610 14 C 0.287 3.713 15 C -0.286 4.286 16 C 0.060 3.940 17 C -0.061 4.061 18 N -0.320 5.320 19 N -0.366 5.366 20 C 0.270 3.730 21 C -0.556 4.556 22 H 0.050 0.950 23 C 0.024 3.976 24 N -0.914 5.914 25 Si 0.970 3.030 26 H -0.273 1.273 27 H -0.272 1.272 28 H -0.270 1.270 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.039 0.961 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.435 0.565 40 H 0.427 0.573 41 H 0.182 0.818 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.074 0.926 45 H 0.032 0.968 46 H 0.043 0.957 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.250 -24.586 0.476 27.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.148 4.148 3 C -0.101 4.101 4 H 0.093 0.907 5 C -0.209 4.209 6 C -0.053 4.053 7 O -0.157 6.157 8 N -0.253 5.253 9 C 0.313 3.687 10 O -0.401 6.401 11 C 0.318 3.682 12 O -0.364 6.364 13 N -0.258 5.258 14 C 0.066 3.934 15 C -0.318 4.318 16 C -0.106 4.106 17 C -0.119 4.119 18 N -0.145 5.145 19 N -0.151 5.151 20 C 0.151 3.849 21 C -0.594 4.594 22 H 0.069 0.931 23 C -0.178 4.178 24 N -0.552 5.552 25 Si 0.794 3.206 26 H -0.198 1.198 27 H -0.197 1.197 28 H -0.195 1.195 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.280 0.720 40 H 0.265 0.735 41 H 0.199 0.801 42 H 0.105 0.895 43 H 0.119 0.881 44 H 0.093 0.907 45 H 0.051 0.949 46 H 0.061 0.939 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.973 -23.043 0.298 25.524 hybrid contribution -0.785 0.309 0.747 1.127 sum -11.758 -22.733 1.045 25.615 Atomic orbital electron populations 1.21822 0.94985 1.02343 1.02104 1.21485 0.96607 0.93405 1.03330 1.21166 0.90742 0.98631 0.99566 0.90654 1.21900 1.02228 1.00018 0.96737 1.23570 0.96346 0.82038 1.03347 1.90638 0.99572 1.29149 1.96352 1.46690 0.97337 1.08567 1.72752 1.19370 0.87161 0.83230 0.78933 1.90855 1.63497 1.37046 1.48717 1.19406 0.87798 0.82839 0.78183 1.90695 1.63150 1.35697 1.46849 1.42269 1.04218 1.10646 1.68657 1.18307 0.82820 0.88961 1.03356 1.21576 0.90016 0.99823 1.20371 1.22934 0.97920 0.90833 0.98872 1.20261 0.89262 0.98651 1.03769 1.77345 0.93698 1.16120 1.27361 1.49359 1.03469 1.06024 1.56276 1.19252 0.93320 0.74360 0.97954 1.21448 1.44359 1.01310 0.92256 0.93128 1.25734 0.93814 0.96314 1.01929 1.69997 1.41523 1.11325 1.32394 0.85323 0.78392 0.78252 0.78637 1.19771 1.19688 1.19480 0.91661 0.92365 0.92852 0.90667 0.90666 0.91821 0.94153 0.91186 0.89951 0.89648 0.71976 0.73464 0.80123 0.89529 0.88075 0.90729 0.94947 0.93881 0.91663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.67 71.99 0.70 -0.49 16 2 C -0.11 -0.83 5.40 30.60 0.17 -0.66 16 3 C -0.08 -0.96 2.63 -10.79 -0.03 -0.98 16 4 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 5 C -0.15 -2.08 8.85 71.98 0.64 -1.44 16 6 C 0.02 0.30 5.61 71.98 0.40 0.70 16 7 O -0.15 -3.38 10.64 -21.38 -0.23 -3.61 16 8 N -0.55 -12.08 6.38 -174.60 -1.11 -13.19 16 9 C 0.53 15.70 8.03 87.22 0.70 16.40 16 10 O -0.53 -19.43 16.88 14.11 0.24 -19.20 16 11 C 0.54 16.74 7.85 87.22 0.68 17.42 16 12 O -0.49 -14.71 13.60 -3.39 -0.05 -14.76 16 13 N -0.61 -22.59 5.40 -309.57 -1.67 -24.27 16 14 C 0.29 12.02 7.68 131.25 1.01 13.03 16 15 C -0.29 -10.74 9.58 22.15 0.21 -10.52 16 16 C 0.06 2.23 7.20 43.06 0.31 2.54 16 17 C -0.06 -1.53 10.44 71.24 0.74 -0.78 16 18 N -0.32 -14.73 12.56 -47.48 -0.60 -15.32 16 19 N -0.37 -17.52 3.62 -348.37 -1.26 -18.79 16 20 C 0.27 14.29 6.02 85.63 0.52 14.80 16 21 C -0.56 -31.27 9.39 25.60 0.24 -31.03 16 22 H 0.05 2.95 7.81 -2.91 -0.02 2.92 16 23 C 0.02 1.31 5.46 84.65 0.46 1.77 16 24 N -0.91 -52.10 13.29 21.45 0.28 -51.82 16 25 Si 0.97 43.81 29.54 68.60 2.03 45.84 16 26 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 27 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 28 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 29 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.06 0.47 6.56 -2.39 -0.02 0.45 16 31 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.04 0.76 7.82 -2.39 -0.02 0.74 16 36 H 0.07 0.82 6.56 -2.39 -0.02 0.80 16 37 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.44 6.70 8.01 -92.71 -0.74 5.96 16 40 H 0.43 16.45 7.46 -92.71 -0.69 15.76 16 41 H 0.18 6.02 5.83 -2.91 -0.02 6.01 16 42 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.03 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.04 2.26 7.52 -2.39 -0.02 2.25 16 47 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -71.00 400.63 3.96 -67.04 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: -0.42 Total: 27.33 kcal Atomic # 6 Polarization: 13.99 SS G_CDS: 6.75 Total: 20.74 kcal Atomic # 7 Polarization: -119.02 SS G_CDS: -4.36 Total: -123.38 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -0.04 Total: -37.56 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -71.00 3.96 -67.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815713963.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.060 kcal (2) G-P(sol) polarization free energy of solvation -70.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds