Wall clock time and date at job start Tue Mar 31 2020 21:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46648 * 2 1 4 4 H 1.09000 * 109.46891 * 304.99366 * 3 2 1 5 5 C 1.52997 * 109.47412 * 64.99980 * 3 2 1 6 6 C 1.53002 * 109.47001 * 185.00256 * 3 2 1 7 7 C 1.52998 * 109.47286 * 174.99697 * 6 3 2 8 8 H 1.08999 * 109.46909 * 54.99917 * 7 6 3 9 9 C 1.52996 * 109.47156 * 174.99576 * 7 6 3 10 10 O 1.42902 * 109.47108 * 55.00140 * 9 7 6 11 11 N 1.46491 * 109.47355 * 295.00098 * 7 6 3 12 12 C 1.34775 * 120.00602 * 154.99940 * 11 7 6 13 13 O 1.21366 * 119.99633 * 359.97438 * 12 11 7 14 14 C 1.49310 * 120.00762 * 179.97438 * 12 11 7 15 15 O 1.21407 * 119.99220 * 359.97438 * 14 12 11 16 16 N 1.34769 * 120.00412 * 180.02562 * 14 12 11 17 17 C 1.40291 * 120.00128 * 180.02562 * 16 14 12 18 18 C 1.40719 * 126.10262 * 359.97138 * 17 16 14 19 19 N 1.30876 * 108.38100 * 179.73879 * 18 17 16 20 20 N 1.40063 * 108.42913 * 0.44672 * 19 18 17 21 21 C 1.37301 * 126.05067 * 179.81431 * 20 19 18 22 22 H 1.08002 * 119.99622 * 179.68466 * 21 20 19 23 23 C 1.39003 * 119.99972 * 359.96617 * 21 20 19 24 24 N 1.31284 * 120.00043 * 359.72316 * 23 21 20 25 25 Si 1.86801 * 119.99884 * 179.72361 * 23 21 20 26 26 H 1.48504 * 109.47209 * 89.99998 * 25 23 21 27 27 H 1.48499 * 109.47039 * 209.99949 * 25 23 21 28 28 H 1.48501 * 109.47275 * 329.99749 * 25 23 21 29 29 C 1.35786 * 126.10012 * 179.97438 * 17 16 14 30 30 H 1.09002 * 109.47498 * 60.00412 * 1 2 3 31 31 H 1.09003 * 109.46847 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47554 * 299.99783 * 1 2 3 33 33 H 1.08993 * 109.47138 * 240.00087 * 2 1 3 34 34 H 1.08992 * 109.47496 * 119.99590 * 2 1 3 35 35 H 1.09001 * 109.46863 * 59.99953 * 5 3 2 36 36 H 1.08994 * 109.47074 * 179.97438 * 5 3 2 37 37 H 1.08998 * 109.46915 * 300.00305 * 5 3 2 38 38 H 1.09003 * 109.47247 * 54.99315 * 6 3 2 39 39 H 1.09002 * 109.46829 * 294.99968 * 6 3 2 40 40 H 1.09001 * 109.47128 * 175.00361 * 9 7 6 41 41 H 1.09004 * 109.47712 * 295.00610 * 9 7 6 42 42 H 0.96697 * 113.99928 * 179.97438 * 10 9 7 43 43 H 0.97005 * 119.99874 * 334.99464 * 11 7 6 44 44 H 0.97005 * 119.99874 * 359.97438 * 16 14 12 45 45 H 1.08003 * 125.80725 * 0.02997 * 18 17 16 46 46 H 0.97004 * 119.99619 * 180.02562 * 24 23 21 47 47 H 1.08004 * 126.25530 * 359.97438 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 1.6351 2.1266 1.3073 6 6 3.5647 1.4445 -0.1258 7 6 4.0643 2.8852 -0.2513 8 1 3.6969 3.4717 0.5908 9 6 5.5942 2.8962 -0.2515 10 8 6.0766 2.0339 -1.2839 11 7 3.5715 3.4657 -1.5027 12 6 3.4331 4.8014 -1.6176 13 8 3.7163 5.5233 -0.6839 14 6 2.9314 5.3932 -2.8932 15 8 2.6485 4.6710 -3.8273 16 7 2.7935 6.7288 -3.0082 17 6 2.3215 7.2848 -4.2067 18 6 1.9566 6.5724 -5.3640 19 7 1.5620 7.4307 -6.2698 20 7 1.6683 8.7203 -5.7337 21 6 1.3521 9.8914 -6.3770 22 1 1.4675 10.8361 -5.8665 23 6 0.8780 9.8606 -7.6834 24 7 0.7378 8.7122 -8.3039 25 14 0.4406 11.4533 -8.5559 26 1 1.6368 11.9737 -9.2656 27 1 -0.6449 11.1984 -9.5367 28 1 -0.0179 12.4541 -7.5592 29 6 2.1354 8.6064 -4.4569 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8899 35 1 2.0698 1.5876 2.1491 36 1 1.9987 3.1541 1.3074 37 1 0.5488 2.1252 1.3969 38 1 3.8570 0.8801 -1.0114 39 1 4.0028 0.9838 0.7596 40 1 5.9502 3.9109 -0.4298 41 1 5.9604 2.5470 0.7140 42 1 7.0409 1.9921 -1.3429 43 1 3.3448 2.8887 -2.2488 44 1 3.0199 7.3058 -2.2619 45 1 1.9914 5.4995 -5.4828 46 1 0.4073 8.6909 -9.2157 47 1 2.3231 9.4190 -3.7706 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832824762.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:27 Heat of formation + Delta-G solvation = -52.998500 kcal Electronic energy + Delta-G solvation = -29235.993248 eV Core-core repulsion = 25034.503937 eV Total energy + Delta-G solvation = -4201.489311 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.60744 -39.65245 -38.50665 -37.54693 -36.67280 -34.87583 -34.08186 -33.14969 -31.32540 -30.31254 -29.25945 -28.01557 -26.85762 -25.47501 -24.33091 -23.69595 -21.28888 -20.88261 -20.35814 -20.04765 -19.45467 -18.15021 -17.76979 -17.38679 -16.37459 -15.83331 -15.58905 -15.44113 -15.37192 -15.09174 -15.03657 -14.54516 -14.05196 -13.88081 -13.75037 -13.56224 -13.49367 -13.09395 -12.98097 -12.82888 -12.56986 -12.29601 -11.96433 -11.78662 -11.73323 -11.57048 -11.40959 -11.28588 -11.18999 -10.87320 -10.83365 -10.70650 -10.65211 -10.55362 -10.27555 -10.23106 -9.24736 -9.21640 -9.09487 -8.86457 -8.11948 -6.76763 -6.59769 -4.27007 1.67890 2.62117 2.93730 3.04106 3.08989 3.34100 3.72698 3.76218 3.97801 4.02660 4.28085 4.38559 4.58582 4.62565 4.63405 4.89652 4.96176 4.98817 5.03273 5.05104 5.11682 5.24496 5.29403 5.36811 5.43965 5.50397 5.58614 5.75139 5.76386 5.85476 5.87286 5.95899 6.15843 6.20093 6.20777 6.29553 6.37175 6.77212 6.89653 6.94171 7.17163 7.27375 7.35601 7.78121 7.88058 8.12371 8.19631 8.50569 8.70848 9.32124 9.60855 10.36036 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018205 B = 0.002196 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.628319 B =12744.846187 C =13417.442252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C -0.098 4.098 4 H 0.075 0.925 5 C -0.152 4.152 6 C -0.117 4.117 7 C 0.145 3.855 8 H 0.106 0.894 9 C 0.062 3.938 10 O -0.567 6.567 11 N -0.689 5.689 12 C 0.516 3.484 13 O -0.534 6.534 14 C 0.483 3.517 15 O -0.521 6.521 16 N -0.584 5.584 17 C -0.068 4.068 18 C -0.027 4.027 19 N -0.260 5.260 20 N -0.139 5.139 21 C -0.322 4.322 22 H 0.118 0.882 23 C 0.046 3.954 24 N -0.768 5.768 25 Si 0.936 3.064 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.263 1.263 29 C -0.078 4.078 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.378 0.622 43 H 0.415 0.585 44 H 0.409 0.591 45 H 0.178 0.822 46 H 0.276 0.724 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.827 -13.200 17.439 22.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C -0.117 4.117 4 H 0.094 0.906 5 C -0.209 4.209 6 C -0.154 4.154 7 C 0.040 3.960 8 H 0.123 0.877 9 C -0.017 4.017 10 O -0.372 6.372 11 N -0.342 5.342 12 C 0.297 3.703 13 O -0.411 6.411 14 C 0.264 3.736 15 O -0.399 6.399 16 N -0.227 5.227 17 C -0.174 4.174 18 C -0.203 4.203 19 N -0.091 5.091 20 N 0.095 4.905 21 C -0.454 4.454 22 H 0.135 0.865 23 C -0.172 4.172 24 N -0.394 5.394 25 Si 0.760 3.240 26 H -0.195 1.195 27 H -0.200 1.200 28 H -0.188 1.188 29 C -0.229 4.229 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.225 0.775 43 H 0.252 0.748 44 H 0.243 0.757 45 H 0.194 0.806 46 H 0.086 0.914 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.655 -13.237 15.939 21.236 hybrid contribution 0.833 0.801 0.715 1.359 sum 5.489 -12.436 16.654 21.497 Atomic orbital electron populations 1.21832 0.95885 1.01434 1.02127 1.21545 0.95978 0.96088 1.01870 1.21241 0.94946 0.96473 0.99002 0.90644 1.21946 1.01606 1.00518 0.96831 1.21837 0.95342 0.94696 1.03560 1.21257 0.91646 0.95389 0.87666 0.87677 1.22651 0.94675 0.93928 0.90473 1.86482 1.26588 1.68059 1.56064 1.45704 1.65054 1.06469 1.17021 1.20316 0.78368 0.83194 0.88402 1.90715 1.49845 1.60280 1.40236 1.19666 0.82504 0.83304 0.88145 1.90661 1.49941 1.59884 1.39365 1.42144 1.60169 1.05751 1.14640 1.17251 1.19825 0.91777 0.88587 1.24151 1.05119 1.00233 0.90758 1.78263 1.24925 0.85964 1.19957 1.44564 1.34225 1.05644 1.06116 1.19918 1.45181 0.83096 0.97209 0.86459 1.25666 0.95752 0.98984 0.96748 1.70211 1.32737 1.24798 1.11642 0.85806 0.78740 0.80154 0.79340 1.19534 1.20046 1.18752 1.21302 1.15502 0.95344 0.90785 0.92540 0.92977 0.92561 0.91906 0.92177 0.92767 0.92492 0.92376 0.90124 0.90435 0.92901 0.92734 0.77480 0.74775 0.75657 0.80560 0.91363 0.83377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.67 37.16 0.36 -0.83 16 2 C -0.12 -0.87 5.40 -26.73 -0.14 -1.02 16 3 C -0.10 -0.81 2.33 -90.62 -0.21 -1.02 16 4 H 0.08 0.75 7.62 -51.93 -0.40 0.36 16 5 C -0.15 -1.21 8.71 37.16 0.32 -0.89 16 6 C -0.12 -0.92 3.94 -26.73 -0.11 -1.03 16 7 C 0.14 1.40 2.23 -67.94 -0.15 1.24 16 8 H 0.11 1.05 5.78 -51.93 -0.30 0.75 16 9 C 0.06 0.54 6.85 37.16 0.25 0.80 16 10 O -0.57 -5.04 12.83 -35.23 -0.45 -5.49 16 11 N -0.69 -8.42 4.39 -54.29 -0.24 -8.66 16 12 C 0.52 7.83 7.85 -11.65 -0.09 7.73 16 13 O -0.53 -8.59 16.14 5.48 0.09 -8.50 16 14 C 0.48 8.86 7.85 -11.65 -0.09 8.77 16 15 O -0.52 -10.73 13.62 5.45 0.07 -10.66 16 16 N -0.58 -11.14 5.45 -10.46 -0.06 -11.20 16 17 C -0.07 -1.60 6.90 -83.93 -0.58 -2.18 16 18 C -0.03 -0.70 10.84 -17.02 -0.18 -0.89 16 19 N -0.26 -7.51 10.39 30.81 0.32 -7.19 16 20 N -0.14 -3.79 3.73 -11.40 -0.04 -3.83 16 21 C -0.32 -8.45 10.25 -14.82 -0.15 -8.60 16 22 H 0.12 2.74 7.83 -52.49 -0.41 2.33 16 23 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 24 N -0.77 -21.25 11.81 55.50 0.66 -20.60 16 25 Si 0.94 18.76 29.55 -169.99 -5.02 13.74 16 26 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 27 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 28 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 29 C -0.08 -1.84 11.50 -16.38 -0.19 -2.03 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.41 6.56 -51.93 -0.34 0.07 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.51 6.46 -51.93 -0.34 0.17 16 37 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 38 H 0.08 0.70 7.73 -51.93 -0.40 0.30 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.38 1.88 9.12 45.56 0.42 2.29 16 43 H 0.42 5.10 8.07 -40.82 -0.33 4.77 16 44 H 0.41 6.71 8.29 -40.82 -0.34 6.37 16 45 H 0.18 4.49 5.92 -52.48 -0.31 4.18 16 46 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16 47 H 0.15 2.94 8.06 -52.48 -0.42 2.51 16 LS Contribution 390.49 15.07 5.88 5.88 Total: -1.00 -33.14 390.49 -5.88 -39.02 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -6.03 Total: 16.33 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -1.06 Total: 1.16 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: 0.64 Total: -51.48 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.29 Total: -24.65 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.02 Total: 13.74 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.14 -5.88 -39.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832824762.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.981 kcal (2) G-P(sol) polarization free energy of solvation -33.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds