Wall clock time and date at job start Tue Mar 31 2020 21:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46648 * 2 1 4 4 H 1.09000 * 109.46891 * 304.99366 * 3 2 1 5 5 C 1.52997 * 109.47412 * 64.99980 * 3 2 1 6 6 C 1.53002 * 109.47001 * 185.00256 * 3 2 1 7 7 C 1.52998 * 109.47286 * 174.99697 * 6 3 2 8 8 H 1.08999 * 109.46909 * 54.99917 * 7 6 3 9 9 C 1.52996 * 109.47156 * 174.99576 * 7 6 3 10 10 O 1.42902 * 109.47108 * 55.00140 * 9 7 6 11 11 N 1.46491 * 109.47355 * 295.00098 * 7 6 3 12 12 C 1.34775 * 120.00602 * 154.99940 * 11 7 6 13 13 O 1.21366 * 119.99633 * 359.97438 * 12 11 7 14 14 C 1.49310 * 120.00762 * 179.97438 * 12 11 7 15 15 O 1.21407 * 119.99220 * 359.97438 * 14 12 11 16 16 N 1.34769 * 120.00412 * 180.02562 * 14 12 11 17 17 C 1.40291 * 120.00128 * 180.02562 * 16 14 12 18 18 C 1.40719 * 126.10262 * 359.97138 * 17 16 14 19 19 N 1.30876 * 108.38100 * 179.73879 * 18 17 16 20 20 N 1.40063 * 108.42913 * 0.44672 * 19 18 17 21 21 C 1.37301 * 126.05067 * 179.81431 * 20 19 18 22 22 H 1.08002 * 119.99622 * 179.68466 * 21 20 19 23 23 C 1.39003 * 119.99972 * 359.96617 * 21 20 19 24 24 N 1.31284 * 120.00043 * 359.72316 * 23 21 20 25 25 Si 1.86801 * 119.99884 * 179.72361 * 23 21 20 26 26 H 1.48504 * 109.47209 * 89.99998 * 25 23 21 27 27 H 1.48499 * 109.47039 * 209.99949 * 25 23 21 28 28 H 1.48501 * 109.47275 * 329.99749 * 25 23 21 29 29 C 1.35786 * 126.10012 * 179.97438 * 17 16 14 30 30 H 1.09002 * 109.47498 * 60.00412 * 1 2 3 31 31 H 1.09003 * 109.46847 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47554 * 299.99783 * 1 2 3 33 33 H 1.08993 * 109.47138 * 240.00087 * 2 1 3 34 34 H 1.08992 * 109.47496 * 119.99590 * 2 1 3 35 35 H 1.09001 * 109.46863 * 59.99953 * 5 3 2 36 36 H 1.08994 * 109.47074 * 179.97438 * 5 3 2 37 37 H 1.08998 * 109.46915 * 300.00305 * 5 3 2 38 38 H 1.09003 * 109.47247 * 54.99315 * 6 3 2 39 39 H 1.09002 * 109.46829 * 294.99968 * 6 3 2 40 40 H 1.09001 * 109.47128 * 175.00361 * 9 7 6 41 41 H 1.09004 * 109.47712 * 295.00610 * 9 7 6 42 42 H 0.96697 * 113.99928 * 179.97438 * 10 9 7 43 43 H 0.97005 * 119.99874 * 334.99464 * 11 7 6 44 44 H 0.97005 * 119.99874 * 359.97438 * 16 14 12 45 45 H 1.08003 * 125.80725 * 0.02997 * 18 17 16 46 46 H 0.97004 * 119.99619 * 180.02562 * 24 23 21 47 47 H 1.08004 * 126.25530 * 359.97438 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 1.6351 2.1266 1.3073 6 6 3.5647 1.4445 -0.1258 7 6 4.0643 2.8852 -0.2513 8 1 3.6969 3.4717 0.5908 9 6 5.5942 2.8962 -0.2515 10 8 6.0766 2.0339 -1.2839 11 7 3.5715 3.4657 -1.5027 12 6 3.4331 4.8014 -1.6176 13 8 3.7163 5.5233 -0.6839 14 6 2.9314 5.3932 -2.8932 15 8 2.6485 4.6710 -3.8273 16 7 2.7935 6.7288 -3.0082 17 6 2.3215 7.2848 -4.2067 18 6 1.9566 6.5724 -5.3640 19 7 1.5620 7.4307 -6.2698 20 7 1.6683 8.7203 -5.7337 21 6 1.3521 9.8914 -6.3770 22 1 1.4675 10.8361 -5.8665 23 6 0.8780 9.8606 -7.6834 24 7 0.7378 8.7122 -8.3039 25 14 0.4406 11.4533 -8.5559 26 1 1.6368 11.9737 -9.2656 27 1 -0.6449 11.1984 -9.5367 28 1 -0.0179 12.4541 -7.5592 29 6 2.1354 8.6064 -4.4569 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8899 35 1 2.0698 1.5876 2.1491 36 1 1.9987 3.1541 1.3074 37 1 0.5488 2.1252 1.3969 38 1 3.8570 0.8801 -1.0114 39 1 4.0028 0.9838 0.7596 40 1 5.9502 3.9109 -0.4298 41 1 5.9604 2.5470 0.7140 42 1 7.0409 1.9921 -1.3429 43 1 3.3448 2.8887 -2.2488 44 1 3.0199 7.3058 -2.2619 45 1 1.9914 5.4995 -5.4828 46 1 0.4073 8.6909 -9.2157 47 1 2.3231 9.4190 -3.7706 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832824762.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:26 Heat of formation + Delta-G solvation = -78.584727 kcal Electronic energy + Delta-G solvation = -29237.102750 eV Core-core repulsion = 25034.503937 eV Total energy + Delta-G solvation = -4202.598813 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.06368 -41.28348 -39.80262 -38.66860 -37.32457 -36.27332 -35.42593 -34.88497 -32.31766 -32.13879 -30.07766 -29.75955 -27.52658 -27.20813 -25.67723 -24.57091 -22.96154 -22.12703 -21.57467 -21.24173 -20.74644 -19.62484 -19.16748 -18.47801 -17.54452 -17.45519 -17.02091 -16.76949 -16.57893 -16.08722 -15.93157 -15.75055 -15.51311 -15.28331 -14.94161 -14.85952 -14.58611 -14.49619 -14.18420 -13.63522 -13.51924 -13.38934 -13.25170 -12.96828 -12.91841 -12.91046 -12.66904 -12.50267 -12.43260 -12.08875 -12.00670 -11.97299 -11.52076 -11.34770 -11.31436 -11.07209 -10.91920 -10.87540 -10.54689 -10.23847 -10.14670 -8.62866 -8.49232 -6.27082 0.29162 1.29222 1.31449 1.42233 1.58598 1.72362 2.04100 2.11850 2.53107 2.58482 2.93509 3.07335 3.38872 3.51620 3.61639 3.92177 3.99413 4.20773 4.29477 4.38991 4.40679 4.50295 4.51828 4.55824 4.63215 4.72313 4.76058 4.85223 4.94002 4.95275 4.97734 5.07600 5.15848 5.21216 5.22632 5.25200 5.28166 5.30358 5.32786 5.55366 5.57901 5.90257 6.02862 6.24780 6.48293 6.66902 6.80114 6.89124 7.07672 7.40874 7.62124 8.50003 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018205 B = 0.002196 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.628319 B =12744.846187 C =13417.442252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.114 4.114 3 C -0.097 4.097 4 H 0.052 0.948 5 C -0.150 4.150 6 C -0.106 4.106 7 C 0.138 3.862 8 H 0.106 0.894 9 C 0.065 3.935 10 O -0.582 6.582 11 N -0.675 5.675 12 C 0.525 3.475 13 O -0.541 6.541 14 C 0.483 3.517 15 O -0.544 6.544 16 N -0.582 5.582 17 C -0.056 4.056 18 C -0.050 4.050 19 N -0.308 5.308 20 N -0.163 5.163 21 C -0.353 4.353 22 H 0.142 0.858 23 C -0.006 4.006 24 N -0.821 5.821 25 Si 1.020 2.980 26 H -0.264 1.264 27 H -0.276 1.276 28 H -0.245 1.245 29 C -0.075 4.075 30 H 0.041 0.959 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.045 0.955 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.036 0.964 41 H 0.085 0.915 42 H 0.395 0.605 43 H 0.415 0.585 44 H 0.423 0.577 45 H 0.174 0.826 46 H 0.278 0.722 47 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.703 -12.938 19.651 24.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.152 4.152 3 C -0.116 4.116 4 H 0.071 0.929 5 C -0.207 4.207 6 C -0.144 4.144 7 C 0.035 3.965 8 H 0.123 0.877 9 C -0.014 4.014 10 O -0.390 6.390 11 N -0.327 5.327 12 C 0.305 3.695 13 O -0.419 6.419 14 C 0.265 3.735 15 O -0.422 6.422 16 N -0.227 5.227 17 C -0.162 4.162 18 C -0.225 4.225 19 N -0.139 5.139 20 N 0.069 4.931 21 C -0.484 4.484 22 H 0.159 0.841 23 C -0.218 4.218 24 N -0.449 5.449 25 Si 0.839 3.161 26 H -0.188 1.188 27 H -0.201 1.201 28 H -0.168 1.168 29 C -0.226 4.226 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.119 0.881 40 H 0.054 0.946 41 H 0.103 0.897 42 H 0.245 0.755 43 H 0.252 0.748 44 H 0.261 0.739 45 H 0.191 0.809 46 H 0.088 0.912 47 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 5.569 -13.008 18.210 23.062 hybrid contribution 0.629 0.552 0.166 0.853 sum 6.198 -12.456 18.376 23.049 Atomic orbital electron populations 1.21843 0.96228 1.01772 1.01565 1.21524 0.95666 0.95514 1.02469 1.21212 0.95214 0.96831 0.98349 0.92925 1.21925 1.01503 1.00055 0.97192 1.21781 0.94931 0.93345 1.04316 1.21564 0.92673 0.96221 0.86016 0.87657 1.22601 0.93618 0.93267 0.91905 1.86440 1.28403 1.67872 1.56293 1.45776 1.63600 1.05239 1.18052 1.19626 0.78877 0.84130 0.86830 1.90719 1.50671 1.60631 1.39868 1.20371 0.81120 0.82888 0.89082 1.90650 1.50465 1.60442 1.40674 1.42082 1.60478 1.06390 1.13786 1.17294 1.18228 0.91563 0.89137 1.24237 1.06197 1.00136 0.91931 1.78160 1.26627 0.87336 1.21797 1.44849 1.35475 1.05401 1.07365 1.20663 1.45822 0.83713 0.98184 0.84054 1.26899 0.94797 1.02869 0.97215 1.70383 1.34486 1.27802 1.12208 0.84578 0.78348 0.75250 0.77952 1.18844 1.20130 1.16758 1.22002 1.13783 0.96597 0.90232 0.93950 0.92203 0.92298 0.92082 0.90735 0.91075 0.93548 0.92722 0.90676 0.88138 0.94612 0.89714 0.75499 0.74790 0.73928 0.80902 0.91239 0.79452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.67 71.98 0.70 -1.56 16 2 C -0.11 -1.52 5.40 30.59 0.17 -1.35 16 3 C -0.10 -1.47 2.33 -10.79 -0.03 -1.50 16 4 H 0.05 1.04 7.62 -2.39 -0.02 1.02 16 5 C -0.15 -2.13 8.71 71.98 0.63 -1.51 16 6 C -0.11 -1.44 3.94 30.59 0.12 -1.32 16 7 C 0.14 2.41 2.23 44.99 0.10 2.51 16 8 H 0.11 1.90 5.78 -2.39 -0.01 1.88 16 9 C 0.06 0.99 6.85 71.98 0.49 1.48 16 10 O -0.58 -9.11 12.83 -148.98 -1.91 -11.02 16 11 N -0.67 -15.91 4.39 -444.04 -1.95 -17.86 16 12 C 0.53 15.53 7.85 87.23 0.68 16.21 16 13 O -0.54 -16.67 16.14 -3.30 -0.05 -16.73 16 14 C 0.48 17.70 7.85 87.23 0.69 18.39 16 15 O -0.54 -22.83 13.62 -3.42 -0.05 -22.88 16 16 N -0.58 -21.91 5.45 -305.34 -1.66 -23.57 16 17 C -0.06 -2.62 6.90 37.82 0.26 -2.36 16 18 C -0.05 -2.69 10.84 85.44 0.93 -1.76 16 19 N -0.31 -18.44 10.39 -56.43 -0.59 -19.03 16 20 N -0.16 -9.04 3.73 -189.97 -0.71 -9.75 16 21 C -0.35 -18.59 10.25 84.02 0.86 -17.72 16 22 H 0.14 6.45 7.83 -2.91 -0.02 6.42 16 23 C -0.01 -0.29 5.50 84.96 0.47 0.17 16 24 N -0.82 -47.03 11.81 21.66 0.26 -46.77 16 25 Si 1.02 38.28 29.55 68.60 2.03 40.31 16 26 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 27 H -0.28 -10.27 7.11 99.48 0.71 -9.56 16 28 H -0.24 -8.34 7.11 99.48 0.71 -7.63 16 29 C -0.08 -3.53 11.50 83.41 0.96 -2.57 16 30 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.80 6.56 -2.39 -0.02 0.79 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.05 0.76 6.46 -2.39 -0.02 0.74 16 37 H 0.05 0.81 6.56 -2.39 -0.02 0.80 16 38 H 0.07 1.15 7.73 -2.39 -0.02 1.14 16 39 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.04 0.67 8.14 -2.39 -0.02 0.66 16 41 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 42 H 0.40 3.06 9.12 -74.06 -0.68 2.38 16 43 H 0.42 10.04 8.07 -92.70 -0.75 9.29 16 44 H 0.42 13.34 8.29 -92.70 -0.77 12.57 16 45 H 0.17 9.25 5.92 -2.91 -0.02 9.24 16 46 H 0.28 14.59 8.31 -92.71 -0.77 13.82 16 47 H 0.19 7.01 8.06 -2.91 -0.02 6.99 16 Total: -1.00 -74.18 390.49 1.23 -72.95 By element: Atomic # 1 Polarization: 48.39 SS G_CDS: -1.16 Total: 47.23 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 7.02 Total: 7.12 kcal Atomic # 7 Polarization: -112.33 SS G_CDS: -4.65 Total: -116.98 kcal Atomic # 8 Polarization: -48.61 SS G_CDS: -2.01 Total: -50.62 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 2.03 Total: 40.31 kcal Total: -74.18 1.23 -72.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832824762.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.638 kcal (2) G-P(sol) polarization free energy of solvation -74.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds