Wall clock time and date at job start Tue Mar 31 2020 21:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46766 * 2 1 4 4 H 1.08991 * 109.47463 * 54.99914 * 3 2 1 5 5 C 1.53009 * 109.46960 * 294.99654 * 3 2 1 6 6 C 1.53001 * 109.46822 * 175.00056 * 3 2 1 7 7 C 1.53002 * 109.47017 * 184.99520 * 6 3 2 8 8 H 1.08991 * 109.47479 * 304.99954 * 7 6 3 9 9 C 1.52999 * 109.47276 * 184.99968 * 7 6 3 10 10 O 1.42903 * 109.47256 * 305.00584 * 9 7 6 11 11 N 1.46497 * 109.46869 * 65.00075 * 7 6 3 12 12 C 1.34780 * 120.00156 * 204.99778 * 11 7 6 13 13 O 1.21369 * 119.99528 * 0.02562 * 12 11 7 14 14 C 1.49309 * 120.00158 * 180.02562 * 12 11 7 15 15 O 1.21400 * 119.99856 * 359.97438 * 14 12 11 16 16 N 1.34772 * 119.99934 * 180.02562 * 14 12 11 17 17 C 1.40287 * 120.00157 * 179.97438 * 16 14 12 18 18 C 1.40730 * 126.10055 * 359.69211 * 17 16 14 19 19 N 1.30872 * 108.37741 * 179.81079 * 18 17 16 20 20 N 1.40064 * 108.43587 * 0.44442 * 19 18 17 21 21 C 1.37297 * 126.05716 * 179.68794 * 20 19 18 22 22 H 1.07991 * 120.00070 * 180.02562 * 21 20 19 23 23 C 1.39015 * 119.99856 * 0.03251 * 21 20 19 24 24 N 1.31283 * 119.99800 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99823 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47110 * 90.00002 * 25 23 21 27 27 H 1.48503 * 109.46887 * 209.99764 * 25 23 21 28 28 H 1.48501 * 109.47430 * 329.99709 * 25 23 21 29 29 C 1.35792 * 126.10559 * 179.97438 * 17 16 14 30 30 H 1.08994 * 109.47259 * 60.00315 * 1 2 3 31 31 H 1.09001 * 109.47155 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47172 * 299.99774 * 1 2 3 33 33 H 1.09002 * 109.47027 * 239.99516 * 2 1 3 34 34 H 1.09002 * 109.47044 * 119.99787 * 2 1 3 35 35 H 1.08996 * 109.46701 * 60.00482 * 5 3 2 36 36 H 1.09001 * 109.46787 * 180.02562 * 5 3 2 37 37 H 1.09004 * 109.46937 * 300.00212 * 5 3 2 38 38 H 1.09006 * 109.47143 * 65.00176 * 6 3 2 39 39 H 1.08992 * 109.47335 * 304.99723 * 6 3 2 40 40 H 1.08997 * 109.47286 * 185.00144 * 9 7 6 41 41 H 1.09008 * 109.47201 * 64.99925 * 9 7 6 42 42 H 0.96700 * 114.00311 * 180.02562 * 10 9 7 43 43 H 0.97004 * 120.00310 * 24.99991 * 11 7 6 44 44 H 0.97004 * 119.99758 * 359.97438 * 16 14 12 45 45 H 1.08000 * 125.80833 * 359.97438 * 18 17 16 46 46 H 0.96999 * 119.99451 * 180.02562 * 24 23 21 47 47 H 1.08003 * 126.24239 * 359.96846 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 1.6352 2.1265 -1.3075 6 6 3.5648 1.4444 0.1257 7 6 4.0644 2.8851 0.2510 8 1 3.6971 3.4716 -0.5910 9 6 5.5944 2.8961 0.2513 10 8 6.0768 2.0338 1.2837 11 7 3.5716 3.4657 1.5025 12 6 3.4333 4.8014 1.6172 13 8 3.7166 5.5232 0.6835 14 6 2.9316 5.3932 2.8929 15 8 2.6479 4.6711 3.8267 16 7 2.7928 6.7289 3.0074 17 6 2.3209 7.2849 4.2058 18 6 1.9507 6.5721 5.3614 19 7 1.5672 7.4313 6.2710 20 7 1.6668 8.7205 5.7325 21 6 1.3494 9.8915 6.3753 22 1 1.4638 10.8360 5.8644 23 6 0.8809 9.8612 7.6837 24 7 0.7415 8.7129 8.3046 25 14 0.4498 11.4545 8.5584 26 1 -0.9788 11.7806 8.3174 27 1 0.6824 11.2971 10.0167 28 1 1.3030 12.5522 8.0367 29 6 2.1348 8.6065 4.4560 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.5489 2.1252 -1.3970 36 1 1.9989 3.1541 -1.3076 37 1 2.0699 1.5874 -2.1492 38 1 4.0029 0.9836 -0.7597 39 1 3.8570 0.8802 1.0112 40 1 5.9504 3.9108 0.4295 41 1 5.9605 2.5469 -0.7142 42 1 7.0411 1.9920 1.3427 43 1 3.3449 2.8888 2.2487 44 1 3.0192 7.3057 2.2611 45 1 1.9806 5.4989 5.4786 46 1 0.4143 8.6919 9.2175 47 1 2.3233 9.4190 3.7699 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832824764.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:36 Heat of formation + Delta-G solvation = -52.997748 kcal Electronic energy + Delta-G solvation = -29235.966491 eV Core-core repulsion = 25034.477213 eV Total energy + Delta-G solvation = -4201.489278 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.60699 -39.65188 -38.50671 -37.54687 -36.67217 -34.87534 -34.08164 -33.14972 -31.32490 -30.31333 -29.25877 -28.01506 -26.85752 -25.47494 -24.33074 -23.69593 -21.28865 -20.88250 -20.35791 -20.04774 -19.45491 -18.14996 -17.76964 -17.38679 -16.37460 -15.83262 -15.58888 -15.44150 -15.37182 -15.09117 -15.03743 -14.54437 -14.05163 -13.88108 -13.75158 -13.56073 -13.49464 -13.09426 -12.98111 -12.82835 -12.56955 -12.29572 -11.96391 -11.78701 -11.73357 -11.57020 -11.40914 -11.28721 -11.18889 -10.87367 -10.83385 -10.70632 -10.65224 -10.55350 -10.27549 -10.23115 -9.24701 -9.21670 -9.09485 -8.86410 -8.11977 -6.76713 -6.59810 -4.26981 1.67883 2.62138 2.93724 3.04095 3.08976 3.34107 3.72719 3.76224 3.97787 4.02672 4.28114 4.38539 4.58606 4.62546 4.63395 4.89667 4.96169 4.98800 5.03270 5.05096 5.11683 5.24530 5.29415 5.36786 5.43972 5.50395 5.58612 5.75159 5.76423 5.85420 5.87275 5.95921 6.15841 6.20100 6.20798 6.29550 6.37175 6.77236 6.89679 6.94204 7.17162 7.27379 7.35599 7.78132 7.88069 8.12380 8.19646 8.50570 8.70849 9.32154 9.60886 10.36014 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018212 B = 0.002196 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.077400 B =12745.820014 C =13417.633805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C -0.098 4.098 4 H 0.075 0.925 5 C -0.152 4.152 6 C -0.117 4.117 7 C 0.145 3.855 8 H 0.106 0.894 9 C 0.062 3.938 10 O -0.567 6.567 11 N -0.689 5.689 12 C 0.516 3.484 13 O -0.534 6.534 14 C 0.483 3.517 15 O -0.521 6.521 16 N -0.584 5.584 17 C -0.069 4.069 18 C -0.027 4.027 19 N -0.260 5.260 20 N -0.139 5.139 21 C -0.322 4.322 22 H 0.118 0.882 23 C 0.046 3.954 24 N -0.768 5.768 25 Si 0.936 3.064 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.263 1.263 29 C -0.078 4.078 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.378 0.622 43 H 0.415 0.585 44 H 0.409 0.591 45 H 0.178 0.822 46 H 0.276 0.724 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.825 -13.200 -17.436 22.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C -0.117 4.117 4 H 0.094 0.906 5 C -0.209 4.209 6 C -0.154 4.154 7 C 0.040 3.960 8 H 0.123 0.877 9 C -0.017 4.017 10 O -0.372 6.372 11 N -0.343 5.343 12 C 0.297 3.703 13 O -0.411 6.411 14 C 0.264 3.736 15 O -0.398 6.398 16 N -0.227 5.227 17 C -0.174 4.174 18 C -0.203 4.203 19 N -0.091 5.091 20 N 0.095 4.905 21 C -0.454 4.454 22 H 0.135 0.865 23 C -0.172 4.172 24 N -0.394 5.394 25 Si 0.760 3.240 26 H -0.195 1.195 27 H -0.200 1.200 28 H -0.188 1.188 29 C -0.229 4.229 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.225 0.775 43 H 0.252 0.748 44 H 0.243 0.757 45 H 0.194 0.806 46 H 0.086 0.914 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.671 -13.237 -15.929 21.232 hybrid contribution 0.825 0.801 -0.719 1.356 sum 5.496 -12.436 -16.648 21.495 Atomic orbital electron populations 1.21832 0.95885 1.01434 1.02127 1.21549 0.95978 0.96088 1.01869 1.21240 0.94946 0.96472 0.99001 0.90642 1.21949 1.01606 1.00518 0.96830 1.21836 0.95341 0.94696 1.03559 1.21259 0.91647 0.95388 0.87666 0.87676 1.22651 0.94675 0.93929 0.90472 1.86483 1.26589 1.68061 1.56062 1.45707 1.65056 1.06468 1.17021 1.20319 0.78366 0.83195 0.88404 1.90716 1.49841 1.60290 1.40230 1.19664 0.82508 0.83304 0.88140 1.90659 1.49929 1.59885 1.39371 1.42144 1.60158 1.05759 1.14643 1.17254 1.19753 0.91750 0.88691 1.24152 1.05162 1.00209 0.90734 1.78260 1.25138 0.85974 1.19740 1.44561 1.34234 1.05676 1.06070 1.19917 1.45260 0.83113 0.97118 0.86457 1.25670 0.95757 0.98993 0.96736 1.70210 1.32665 1.24826 1.11682 0.85805 0.79363 0.80195 0.78672 1.19533 1.20047 1.18751 1.21301 1.15398 0.95350 0.90885 0.92568 0.92977 0.92534 0.92177 0.91906 0.92376 0.92493 0.92766 0.90436 0.90124 0.92900 0.92735 0.77478 0.74775 0.75659 0.80560 0.91362 0.83378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.67 37.16 0.36 -0.83 16 2 C -0.12 -0.87 5.40 -26.73 -0.14 -1.02 16 3 C -0.10 -0.81 2.33 -90.62 -0.21 -1.02 16 4 H 0.08 0.75 7.62 -51.93 -0.40 0.36 16 5 C -0.15 -1.21 8.71 37.16 0.32 -0.89 16 6 C -0.12 -0.92 3.94 -26.73 -0.11 -1.02 16 7 C 0.14 1.40 2.23 -67.93 -0.15 1.24 16 8 H 0.11 1.05 5.78 -51.93 -0.30 0.75 16 9 C 0.06 0.54 6.85 37.16 0.25 0.80 16 10 O -0.57 -5.04 12.83 -35.23 -0.45 -5.49 16 11 N -0.69 -8.42 4.39 -54.29 -0.24 -8.66 16 12 C 0.52 7.83 7.85 -11.65 -0.09 7.73 16 13 O -0.53 -8.59 16.14 5.48 0.09 -8.50 16 14 C 0.48 8.87 7.85 -11.65 -0.09 8.77 16 15 O -0.52 -10.73 13.62 5.45 0.07 -10.66 16 16 N -0.58 -11.14 5.45 -10.46 -0.06 -11.20 16 17 C -0.07 -1.60 6.90 -83.92 -0.58 -2.18 16 18 C -0.03 -0.70 10.85 -17.02 -0.18 -0.89 16 19 N -0.26 -7.52 10.39 30.81 0.32 -7.20 16 20 N -0.14 -3.79 3.73 -11.40 -0.04 -3.83 16 21 C -0.32 -8.45 10.25 -14.82 -0.15 -8.60 16 22 H 0.12 2.75 7.83 -52.49 -0.41 2.33 16 23 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 24 N -0.77 -21.25 11.81 55.50 0.66 -20.60 16 25 Si 0.94 18.76 29.55 -169.99 -5.02 13.74 16 26 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 27 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 28 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 29 C -0.08 -1.84 11.49 -16.38 -0.19 -2.03 16 30 H 0.06 0.41 6.56 -51.93 -0.34 0.07 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 36 H 0.06 0.51 6.46 -51.93 -0.34 0.17 16 37 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.70 7.73 -51.93 -0.40 0.30 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.36 8.14 -51.92 -0.42 -0.07 16 42 H 0.38 1.88 9.12 45.56 0.42 2.29 16 43 H 0.42 5.10 8.07 -40.82 -0.33 4.77 16 44 H 0.41 6.71 8.29 -40.82 -0.34 6.37 16 45 H 0.18 4.49 5.92 -52.49 -0.31 4.18 16 46 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16 47 H 0.15 2.94 8.06 -52.48 -0.42 2.51 16 LS Contribution 390.50 15.07 5.88 5.88 Total: -1.00 -33.14 390.50 -5.88 -39.02 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -6.03 Total: 16.33 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -1.06 Total: 1.16 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: 0.64 Total: -51.48 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.29 Total: -24.65 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.02 Total: 13.74 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.14 -5.88 -39.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832824764.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.980 kcal (2) G-P(sol) polarization free energy of solvation -33.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds