Wall clock time and date at job start Tue Mar 31 2020 21:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46766 * 2 1 4 4 H 1.08991 * 109.47463 * 54.99914 * 3 2 1 5 5 C 1.53009 * 109.46960 * 294.99654 * 3 2 1 6 6 C 1.53001 * 109.46822 * 175.00056 * 3 2 1 7 7 C 1.53002 * 109.47017 * 184.99520 * 6 3 2 8 8 H 1.08991 * 109.47479 * 304.99954 * 7 6 3 9 9 C 1.52999 * 109.47276 * 184.99968 * 7 6 3 10 10 O 1.42903 * 109.47256 * 305.00584 * 9 7 6 11 11 N 1.46497 * 109.46869 * 65.00075 * 7 6 3 12 12 C 1.34780 * 120.00156 * 204.99778 * 11 7 6 13 13 O 1.21369 * 119.99528 * 0.02562 * 12 11 7 14 14 C 1.49309 * 120.00158 * 180.02562 * 12 11 7 15 15 O 1.21400 * 119.99856 * 359.97438 * 14 12 11 16 16 N 1.34772 * 119.99934 * 180.02562 * 14 12 11 17 17 C 1.40287 * 120.00157 * 179.97438 * 16 14 12 18 18 C 1.40730 * 126.10055 * 359.69211 * 17 16 14 19 19 N 1.30872 * 108.37741 * 179.81079 * 18 17 16 20 20 N 1.40064 * 108.43587 * 0.44442 * 19 18 17 21 21 C 1.37297 * 126.05716 * 179.68794 * 20 19 18 22 22 H 1.07991 * 120.00070 * 180.02562 * 21 20 19 23 23 C 1.39015 * 119.99856 * 0.03251 * 21 20 19 24 24 N 1.31283 * 119.99800 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99823 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47110 * 90.00002 * 25 23 21 27 27 H 1.48503 * 109.46887 * 209.99764 * 25 23 21 28 28 H 1.48501 * 109.47430 * 329.99709 * 25 23 21 29 29 C 1.35792 * 126.10559 * 179.97438 * 17 16 14 30 30 H 1.08994 * 109.47259 * 60.00315 * 1 2 3 31 31 H 1.09001 * 109.47155 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47172 * 299.99774 * 1 2 3 33 33 H 1.09002 * 109.47027 * 239.99516 * 2 1 3 34 34 H 1.09002 * 109.47044 * 119.99787 * 2 1 3 35 35 H 1.08996 * 109.46701 * 60.00482 * 5 3 2 36 36 H 1.09001 * 109.46787 * 180.02562 * 5 3 2 37 37 H 1.09004 * 109.46937 * 300.00212 * 5 3 2 38 38 H 1.09006 * 109.47143 * 65.00176 * 6 3 2 39 39 H 1.08992 * 109.47335 * 304.99723 * 6 3 2 40 40 H 1.08997 * 109.47286 * 185.00144 * 9 7 6 41 41 H 1.09008 * 109.47201 * 64.99925 * 9 7 6 42 42 H 0.96700 * 114.00311 * 180.02562 * 10 9 7 43 43 H 0.97004 * 120.00310 * 24.99991 * 11 7 6 44 44 H 0.97004 * 119.99758 * 359.97438 * 16 14 12 45 45 H 1.08000 * 125.80833 * 359.97438 * 18 17 16 46 46 H 0.96999 * 119.99451 * 180.02562 * 24 23 21 47 47 H 1.08003 * 126.24239 * 359.96846 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 1.6352 2.1265 -1.3075 6 6 3.5648 1.4444 0.1257 7 6 4.0644 2.8851 0.2510 8 1 3.6971 3.4716 -0.5910 9 6 5.5944 2.8961 0.2513 10 8 6.0768 2.0338 1.2837 11 7 3.5716 3.4657 1.5025 12 6 3.4333 4.8014 1.6172 13 8 3.7166 5.5232 0.6835 14 6 2.9316 5.3932 2.8929 15 8 2.6479 4.6711 3.8267 16 7 2.7928 6.7289 3.0074 17 6 2.3209 7.2849 4.2058 18 6 1.9507 6.5721 5.3614 19 7 1.5672 7.4313 6.2710 20 7 1.6668 8.7205 5.7325 21 6 1.3494 9.8915 6.3753 22 1 1.4638 10.8360 5.8644 23 6 0.8809 9.8612 7.6837 24 7 0.7415 8.7129 8.3046 25 14 0.4498 11.4545 8.5584 26 1 -0.9788 11.7806 8.3174 27 1 0.6824 11.2971 10.0167 28 1 1.3030 12.5522 8.0367 29 6 2.1348 8.6065 4.4560 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.5489 2.1252 -1.3970 36 1 1.9989 3.1541 -1.3076 37 1 2.0699 1.5874 -2.1492 38 1 4.0029 0.9836 -0.7597 39 1 3.8570 0.8802 1.0112 40 1 5.9504 3.9108 0.4295 41 1 5.9605 2.5469 -0.7142 42 1 7.0411 1.9920 1.3427 43 1 3.3449 2.8888 2.2487 44 1 3.0192 7.3057 2.2611 45 1 1.9806 5.4989 5.4786 46 1 0.4143 8.6919 9.2175 47 1 2.3233 9.4190 3.7699 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832824764.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:35 Heat of formation + Delta-G solvation = -78.583354 kcal Electronic energy + Delta-G solvation = -29237.075966 eV Core-core repulsion = 25034.477213 eV Total energy + Delta-G solvation = -4202.598753 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.06349 -41.28287 -39.80298 -38.66821 -37.32395 -36.27327 -35.42538 -34.88491 -32.31834 -32.13846 -30.07713 -29.75896 -27.52650 -27.20799 -25.67702 -24.57107 -22.96134 -22.12676 -21.57476 -21.24195 -20.74653 -19.62478 -19.16735 -18.47787 -17.54459 -17.45547 -17.02015 -16.76985 -16.57935 -16.08653 -15.93175 -15.75106 -15.51052 -15.28585 -14.94201 -14.85801 -14.58679 -14.49594 -14.18485 -13.63489 -13.51951 -13.38892 -13.25145 -12.96723 -12.92467 -12.90524 -12.66864 -12.50281 -12.43297 -12.08850 -12.00685 -11.97275 -11.52104 -11.34745 -11.31454 -11.07223 -10.91919 -10.87497 -10.54700 -10.23838 -10.14696 -8.62821 -8.49261 -6.27056 0.29156 1.29134 1.31564 1.42233 1.58592 1.72374 2.04090 2.11870 2.53145 2.58451 2.93494 3.07316 3.38866 3.51615 3.61642 3.92182 3.99405 4.20795 4.29466 4.38999 4.40673 4.50290 4.51825 4.55850 4.63238 4.72284 4.76059 4.85224 4.93992 4.95308 4.97748 5.07617 5.15877 5.21226 5.22597 5.25150 5.28155 5.30376 5.32814 5.55364 5.57900 5.90271 6.02862 6.24790 6.48305 6.66893 6.80111 6.89122 7.07684 7.40904 7.62150 8.49992 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018212 B = 0.002196 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.077400 B =12745.820014 C =13417.633805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.114 4.114 3 C -0.097 4.097 4 H 0.052 0.948 5 C -0.150 4.150 6 C -0.106 4.106 7 C 0.138 3.862 8 H 0.106 0.894 9 C 0.065 3.935 10 O -0.582 6.582 11 N -0.675 5.675 12 C 0.525 3.475 13 O -0.541 6.541 14 C 0.484 3.516 15 O -0.544 6.544 16 N -0.583 5.583 17 C -0.056 4.056 18 C -0.050 4.050 19 N -0.308 5.308 20 N -0.163 5.163 21 C -0.353 4.353 22 H 0.142 0.858 23 C -0.006 4.006 24 N -0.821 5.821 25 Si 1.020 2.980 26 H -0.264 1.264 27 H -0.276 1.276 28 H -0.244 1.244 29 C -0.075 4.075 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.045 0.955 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.036 0.964 41 H 0.085 0.915 42 H 0.395 0.605 43 H 0.415 0.585 44 H 0.423 0.577 45 H 0.174 0.826 46 H 0.278 0.722 47 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.739 -12.938 -19.636 24.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.152 4.152 3 C -0.116 4.116 4 H 0.071 0.929 5 C -0.207 4.207 6 C -0.144 4.144 7 C 0.035 3.965 8 H 0.123 0.877 9 C -0.014 4.014 10 O -0.390 6.390 11 N -0.327 5.327 12 C 0.305 3.695 13 O -0.419 6.419 14 C 0.265 3.735 15 O -0.422 6.422 16 N -0.227 5.227 17 C -0.162 4.162 18 C -0.225 4.225 19 N -0.139 5.139 20 N 0.069 4.931 21 C -0.484 4.484 22 H 0.159 0.841 23 C -0.218 4.218 24 N -0.449 5.449 25 Si 0.839 3.161 26 H -0.189 1.189 27 H -0.201 1.201 28 H -0.167 1.167 29 C -0.226 4.226 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.119 0.881 39 H 0.093 0.907 40 H 0.054 0.946 41 H 0.103 0.897 42 H 0.245 0.755 43 H 0.252 0.748 44 H 0.261 0.739 45 H 0.191 0.809 46 H 0.088 0.912 47 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 5.623 -13.006 -18.188 23.056 hybrid contribution 0.603 0.550 -0.175 0.835 sum 6.227 -12.456 -18.364 23.047 Atomic orbital electron populations 1.21842 0.96228 1.01773 1.01565 1.21527 0.95665 0.95514 1.02469 1.21211 0.95214 0.96830 0.98348 0.92923 1.21929 1.01501 1.00054 0.97191 1.21781 0.94929 0.93345 1.04316 1.21566 0.92673 0.96220 0.86015 0.87658 1.22601 0.93618 0.93267 0.91904 1.86440 1.28405 1.67873 1.56291 1.45779 1.63601 1.05238 1.18052 1.19629 0.78876 0.84130 0.86831 1.90720 1.50667 1.60641 1.39861 1.20369 0.81125 0.82889 0.89075 1.90648 1.50454 1.60443 1.40679 1.42081 1.60468 1.06399 1.13791 1.17297 1.18153 0.91537 0.89246 1.24238 1.06245 1.00112 0.91902 1.78157 1.26839 0.87347 1.21578 1.44846 1.35491 1.05435 1.07313 1.20662 1.45903 0.83730 0.98091 0.84052 1.26902 0.94788 1.02879 0.97214 1.70382 1.34436 1.27823 1.12233 0.84578 0.79354 0.75393 0.76803 1.18854 1.20129 1.16748 1.22002 1.13682 0.96603 0.90327 0.92306 0.92203 0.93943 0.90735 0.92082 0.92723 0.93549 0.91074 0.88138 0.90676 0.94611 0.89715 0.75497 0.74790 0.73930 0.80900 0.91240 0.79452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.67 71.98 0.70 -1.56 16 2 C -0.11 -1.52 5.40 30.60 0.17 -1.35 16 3 C -0.10 -1.47 2.33 -10.79 -0.03 -1.50 16 4 H 0.05 1.04 7.62 -2.39 -0.02 1.02 16 5 C -0.15 -2.13 8.71 71.99 0.63 -1.51 16 6 C -0.11 -1.44 3.94 30.60 0.12 -1.32 16 7 C 0.14 2.41 2.23 44.99 0.10 2.51 16 8 H 0.11 1.90 5.78 -2.39 -0.01 1.88 16 9 C 0.06 0.99 6.85 71.98 0.49 1.48 16 10 O -0.58 -9.11 12.83 -148.98 -1.91 -11.02 16 11 N -0.67 -15.91 4.39 -444.01 -1.95 -17.86 16 12 C 0.53 15.53 7.85 87.22 0.68 16.21 16 13 O -0.54 -16.67 16.14 -3.31 -0.05 -16.73 16 14 C 0.48 17.70 7.85 87.23 0.69 18.39 16 15 O -0.54 -22.83 13.62 -3.40 -0.05 -22.87 16 16 N -0.58 -21.91 5.45 -305.33 -1.66 -23.58 16 17 C -0.06 -2.62 6.90 37.83 0.26 -2.36 16 18 C -0.05 -2.69 10.85 85.44 0.93 -1.76 16 19 N -0.31 -18.44 10.39 -56.43 -0.59 -19.03 16 20 N -0.16 -9.04 3.73 -189.98 -0.71 -9.75 16 21 C -0.35 -18.59 10.25 84.02 0.86 -17.73 16 22 H 0.14 6.45 7.83 -2.92 -0.02 6.43 16 23 C -0.01 -0.30 5.50 84.96 0.47 0.17 16 24 N -0.82 -47.03 11.81 21.67 0.26 -46.77 16 25 Si 1.02 38.28 29.55 68.60 2.03 40.31 16 26 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 27 H -0.28 -10.27 7.11 99.48 0.71 -9.56 16 28 H -0.24 -8.33 7.11 99.48 0.71 -7.62 16 29 C -0.08 -3.53 11.49 83.41 0.96 -2.57 16 30 H 0.06 0.80 6.56 -2.39 -0.02 0.79 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 32 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.05 0.81 6.56 -2.39 -0.02 0.80 16 36 H 0.05 0.76 6.46 -2.39 -0.02 0.74 16 37 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.07 1.15 7.73 -2.39 -0.02 1.14 16 40 H 0.04 0.67 8.14 -2.39 -0.02 0.66 16 41 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 42 H 0.40 3.06 9.12 -74.06 -0.68 2.38 16 43 H 0.42 10.04 8.07 -92.71 -0.75 9.29 16 44 H 0.42 13.34 8.29 -92.71 -0.77 12.57 16 45 H 0.17 9.25 5.92 -2.91 -0.02 9.24 16 46 H 0.28 14.59 8.31 -92.71 -0.77 13.82 16 47 H 0.19 7.02 8.06 -2.91 -0.02 6.99 16 Total: -1.00 -74.17 390.50 1.23 -72.94 By element: Atomic # 1 Polarization: 48.39 SS G_CDS: -1.16 Total: 47.24 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 7.02 Total: 7.11 kcal Atomic # 7 Polarization: -112.33 SS G_CDS: -4.65 Total: -116.98 kcal Atomic # 8 Polarization: -48.61 SS G_CDS: -2.01 Total: -50.62 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 2.03 Total: 40.31 kcal Total: -74.17 1.23 -72.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832824764.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.639 kcal (2) G-P(sol) polarization free energy of solvation -74.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds