Wall clock time and date at job start Tue Mar 31 2020 21:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.46906 * 2 1 4 4 C 1.53000 * 109.46637 * 239.99966 * 2 1 3 5 5 O 1.42896 * 109.46996 * 120.00185 * 2 1 3 6 6 C 1.42899 * 114.00083 * 59.99900 * 5 2 1 7 7 C 1.53002 * 109.47064 * 179.97438 * 6 5 2 8 8 C 1.52998 * 109.47353 * 180.02562 * 7 6 5 9 9 N 1.46501 * 109.47467 * 180.02562 * 8 7 6 10 10 C 1.34769 * 120.00323 * 180.02562 * 9 8 7 11 11 O 1.21365 * 119.99967 * 359.97438 * 10 9 8 12 12 C 1.49310 * 120.00069 * 179.97438 * 10 9 8 13 13 O 1.21401 * 120.00204 * 0.02562 * 12 10 9 14 14 N 1.34777 * 119.99824 * 179.97438 * 12 10 9 15 15 C 1.40291 * 119.99920 * 179.97438 * 14 12 10 16 16 C 1.40728 * 126.10038 * 359.96768 * 15 14 12 17 17 N 1.30879 * 108.37511 * 179.78865 * 16 15 14 18 18 N 1.40063 * 108.43330 * 0.38015 * 17 16 15 19 19 C 1.37301 * 126.05067 * 179.87892 * 18 17 16 20 20 H 1.08002 * 119.99622 * 179.68466 * 19 18 17 21 21 C 1.39003 * 119.99972 * 359.96617 * 19 18 17 22 22 N 1.31284 * 120.00043 * 359.72316 * 21 19 18 23 23 Si 1.86801 * 119.99884 * 179.72361 * 21 19 18 24 24 H 1.48504 * 109.46920 * 59.99981 * 23 21 19 25 25 H 1.48504 * 109.46970 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47038 * 299.99751 * 23 21 19 27 27 C 1.35786 * 126.10045 * 180.02562 * 15 14 12 28 28 H 1.08999 * 109.47157 * 299.99772 * 1 2 3 29 29 H 1.09005 * 109.47479 * 60.00098 * 1 2 3 30 30 H 1.09007 * 109.47092 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47319 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47497 * 300.00215 * 3 2 1 33 33 H 1.09003 * 109.47464 * 60.00308 * 3 2 1 34 34 H 1.08998 * 109.47313 * 299.99678 * 4 2 1 35 35 H 1.09005 * 109.46974 * 60.00270 * 4 2 1 36 36 H 1.09005 * 109.46595 * 179.97438 * 4 2 1 37 37 H 1.09001 * 109.47290 * 60.00326 * 6 5 2 38 38 H 1.08998 * 109.47401 * 299.99548 * 6 5 2 39 39 H 1.09004 * 109.47056 * 60.00217 * 7 6 5 40 40 H 1.09001 * 109.47389 * 300.00127 * 7 6 5 41 41 H 1.08996 * 109.47079 * 59.99774 * 8 7 6 42 42 H 1.09009 * 109.46758 * 300.00065 * 8 7 6 43 43 H 0.97005 * 119.99816 * 0.02562 * 9 8 7 44 44 H 0.97005 * 120.00106 * 0.02562 * 14 12 10 45 45 H 1.07994 * 125.80747 * 359.97438 * 16 15 14 46 46 H 0.97004 * 119.99619 * 180.02562 * 22 21 19 47 47 H 1.08006 * 126.25013 * 0.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0063 -0.6737 1.1667 6 6 1.5846 -2.0355 1.2644 7 6 2.1505 -2.6541 2.5443 8 6 1.6996 -4.1123 2.6487 9 7 2.2409 -4.7044 3.8745 10 6 1.9730 -5.9901 4.1772 11 8 1.2829 -6.6573 3.4345 12 6 2.5252 -6.5936 5.4263 13 8 3.2152 -5.9262 6.1694 14 7 2.2569 -7.8792 5.7292 15 6 2.7761 -8.4465 6.9026 16 6 3.5880 -7.7951 7.8496 17 7 3.8687 -8.6436 8.8057 18 7 3.2579 -9.8676 8.5050 19 6 3.3198 -11.0097 9.2645 20 1 2.8047 -11.9021 8.9408 21 6 4.0406 -11.0157 10.4531 22 7 4.6666 -9.9310 10.8466 23 14 4.1184 -12.5673 11.4903 24 1 4.7277 -13.6640 10.6956 25 1 4.9441 -12.3143 12.6984 26 1 2.7457 -12.9574 11.9013 27 6 2.5860 -9.7224 7.3264 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2492 35 1 1.6765 -0.2074 -2.1393 36 1 3.1300 -0.7209 -1.2495 37 1 1.9491 -2.5916 0.4007 38 1 0.4958 -2.0778 1.2907 39 1 1.7864 -2.0981 3.4083 40 1 3.2394 -2.6119 2.5177 41 1 2.0640 -4.6680 1.7847 42 1 0.6107 -4.1549 2.6752 43 1 2.7922 -4.1711 4.4683 44 1 1.7053 -8.4125 5.1356 45 1 3.9200 -6.7687 7.7979 46 1 5.1699 -9.9354 11.6759 47 1 2.0089 -10.4835 6.8223 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850639375.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:57 Heat of formation + Delta-G solvation = -42.036010 kcal Electronic energy + Delta-G solvation = -27801.128502 eV Core-core repulsion = 23600.114560 eV Total energy + Delta-G solvation = -4201.013942 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.50562 -39.60953 -39.40685 -37.97233 -36.05117 -34.47329 -33.89961 -33.16706 -31.62919 -30.32542 -28.18567 -27.96941 -27.87493 -26.39841 -25.05308 -23.45295 -21.98935 -21.04945 -20.44829 -20.21583 -19.46945 -18.17123 -17.44773 -16.95170 -16.54265 -16.44548 -15.67289 -15.55555 -15.47194 -15.13562 -14.92175 -14.86207 -14.19890 -14.09828 -13.80343 -13.53030 -13.49907 -13.02983 -13.01128 -12.97861 -12.50580 -12.50379 -12.20456 -12.08138 -11.94940 -11.93712 -11.73737 -11.57488 -11.30226 -11.27046 -11.25058 -10.90160 -10.84778 -10.58113 -10.29334 -9.89724 -9.34186 -9.22538 -9.15120 -8.87938 -8.13231 -6.78461 -6.60436 -4.28031 1.63880 2.49999 2.94366 3.03484 3.07434 3.23244 3.31995 3.71116 3.76345 3.97885 4.32972 4.35995 4.36748 4.53067 4.55803 4.56767 4.67875 4.78340 4.96181 4.98052 5.02033 5.03498 5.08547 5.13408 5.26063 5.28321 5.32692 5.37428 5.42426 5.58598 5.68001 5.74518 5.80653 5.80979 6.12941 6.19765 6.35557 6.74766 6.87050 6.88296 6.90856 7.15940 7.19058 7.74862 7.84097 8.08952 8.18051 8.47962 8.69049 9.30859 9.59514 10.35264 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.045536 B = 0.001465 C = 0.001435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.748165 B =19104.496177 C =19512.271048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.107 3.893 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.376 6.376 6 C 0.061 3.939 7 C -0.132 4.132 8 C 0.122 3.878 9 N -0.704 5.704 10 C 0.516 3.484 11 O -0.529 6.529 12 C 0.483 3.517 13 O -0.523 6.523 14 N -0.583 5.583 15 C -0.071 4.071 16 C -0.026 4.026 17 N -0.261 5.261 18 N -0.138 5.138 19 C -0.323 4.323 20 H 0.118 0.882 21 C 0.047 3.953 22 N -0.767 5.767 23 Si 0.936 3.064 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.266 1.266 27 C -0.077 4.077 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.415 0.585 44 H 0.409 0.591 45 H 0.178 0.822 46 H 0.276 0.724 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.789 16.296 -20.470 27.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.068 3.932 3 C -0.196 4.196 4 C -0.237 4.237 5 O -0.296 6.296 6 C -0.016 4.016 7 C -0.170 4.170 8 C -0.002 4.002 9 N -0.359 5.359 10 C 0.297 3.703 11 O -0.405 6.405 12 C 0.264 3.736 13 O -0.400 6.400 14 N -0.225 5.225 15 C -0.177 4.177 16 C -0.202 4.202 17 N -0.091 5.091 18 N 0.096 4.904 19 C -0.455 4.455 20 H 0.135 0.865 21 C -0.171 4.171 22 N -0.394 5.394 23 Si 0.760 3.240 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.191 1.191 27 C -0.229 4.229 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.252 0.748 44 H 0.244 0.756 45 H 0.195 0.805 46 H 0.087 0.913 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.920 16.296 -19.045 25.756 hybrid contribution -0.684 -0.743 -0.681 1.218 sum -6.604 15.554 -19.726 25.974 Atomic orbital electron populations 1.22450 0.95692 1.02683 1.02923 1.21492 0.93153 0.93214 0.85345 1.21764 1.02043 0.93247 1.02506 1.22449 1.02326 1.01108 0.97863 1.87954 1.74569 1.23861 1.43179 1.22346 0.98708 0.83081 0.97434 1.21683 1.02727 0.94150 0.98454 1.21247 0.99324 0.92513 0.87073 1.45650 1.53168 1.11952 1.25082 1.20292 0.80878 0.82492 0.86624 1.90732 1.37631 1.61109 1.51003 1.19618 0.83994 0.83188 0.86780 1.90658 1.38276 1.60832 1.50244 1.42141 1.48057 1.10416 1.21927 1.17262 1.13289 0.94173 0.92932 1.24148 1.01989 1.00776 0.93258 1.78265 1.20468 0.89295 1.21117 1.44559 1.26405 1.08205 1.11278 1.19886 1.34038 0.88217 1.03354 0.86470 1.25663 0.95164 0.98873 0.97395 1.70200 1.22587 1.26530 1.20047 0.85870 0.79108 0.80127 0.78921 1.19092 1.20081 1.19095 1.21303 1.10237 0.96990 0.94352 0.91615 0.91489 0.92047 0.91737 0.91152 0.91734 0.92042 0.91494 0.91612 0.92681 0.92674 0.90043 0.90047 0.90859 0.90869 0.74823 0.75584 0.80546 0.91290 0.83336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.99 8.25 37.16 0.31 -0.69 16 2 C 0.11 0.69 1.14 -90.62 -0.10 0.59 16 3 C -0.14 -0.78 8.84 37.15 0.33 -0.45 16 4 C -0.18 -0.99 8.25 37.16 0.31 -0.69 16 5 O -0.38 -3.21 9.99 -35.23 -0.35 -3.56 16 6 C 0.06 0.43 5.14 37.16 0.19 0.62 16 7 C -0.13 -0.98 5.70 -26.73 -0.15 -1.13 16 8 C 0.12 1.09 5.67 -4.04 -0.02 1.07 16 9 N -0.70 -8.17 5.55 -60.78 -0.34 -8.50 16 10 C 0.52 7.75 7.88 -11.65 -0.09 7.66 16 11 O -0.53 -8.66 16.47 5.48 0.09 -8.57 16 12 C 0.48 8.74 7.85 -11.65 -0.09 8.65 16 13 O -0.52 -10.55 13.62 5.45 0.07 -10.48 16 14 N -0.58 -11.02 5.45 -10.45 -0.06 -11.08 16 15 C -0.07 -1.64 6.90 -83.92 -0.58 -2.22 16 16 C -0.03 -0.67 10.85 -17.02 -0.18 -0.86 16 17 N -0.26 -7.49 10.39 30.81 0.32 -7.17 16 18 N -0.14 -3.75 3.73 -11.40 -0.04 -3.79 16 19 C -0.32 -8.44 10.25 -14.82 -0.15 -8.59 16 20 H 0.12 2.72 7.83 -52.49 -0.41 2.31 16 21 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 22 N -0.77 -21.15 11.81 55.50 0.66 -20.49 16 23 Si 0.94 18.66 29.55 -169.99 -5.02 13.64 16 24 H -0.27 -5.16 7.11 56.52 0.40 -4.75 16 25 H -0.28 -5.45 7.11 56.52 0.40 -5.04 16 26 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 27 C -0.08 -1.82 11.50 -16.38 -0.19 -2.01 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.33 6.54 -51.93 -0.34 -0.01 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.33 6.54 -51.93 -0.34 -0.01 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.35 6.42 -51.93 -0.33 0.02 16 38 H 0.06 0.35 6.42 -51.93 -0.33 0.02 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 43 H 0.42 4.47 7.94 -40.82 -0.32 4.14 16 44 H 0.41 6.66 8.29 -40.82 -0.34 6.32 16 45 H 0.18 4.44 5.92 -52.49 -0.31 4.13 16 46 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16 47 H 0.15 2.93 8.06 -52.48 -0.42 2.50 16 LS Contribution 393.43 15.07 5.93 5.93 Total: -1.00 -33.04 393.43 -6.21 -39.25 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -6.94 Total: 11.78 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -0.53 Total: 3.05 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: 0.54 Total: -51.04 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.19 Total: -22.61 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.02 Total: 13.64 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.04 -6.21 -39.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850639375.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.788 kcal (2) G-P(sol) polarization free energy of solvation -33.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds