Wall clock time and date at job start Tue Mar 31 2020 21:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.46906 * 2 1 4 4 C 1.53000 * 109.46637 * 239.99966 * 2 1 3 5 5 O 1.42896 * 109.46996 * 120.00185 * 2 1 3 6 6 C 1.42899 * 114.00083 * 59.99900 * 5 2 1 7 7 C 1.53002 * 109.47064 * 179.97438 * 6 5 2 8 8 C 1.52998 * 109.47353 * 180.02562 * 7 6 5 9 9 N 1.46501 * 109.47467 * 180.02562 * 8 7 6 10 10 C 1.34769 * 120.00323 * 180.02562 * 9 8 7 11 11 O 1.21365 * 119.99967 * 359.97438 * 10 9 8 12 12 C 1.49310 * 120.00069 * 179.97438 * 10 9 8 13 13 O 1.21401 * 120.00204 * 0.02562 * 12 10 9 14 14 N 1.34777 * 119.99824 * 179.97438 * 12 10 9 15 15 C 1.40291 * 119.99920 * 179.97438 * 14 12 10 16 16 C 1.40728 * 126.10038 * 359.96768 * 15 14 12 17 17 N 1.30879 * 108.37511 * 179.78865 * 16 15 14 18 18 N 1.40063 * 108.43330 * 0.38015 * 17 16 15 19 19 C 1.37301 * 126.05067 * 179.87892 * 18 17 16 20 20 H 1.08002 * 119.99622 * 179.68466 * 19 18 17 21 21 C 1.39003 * 119.99972 * 359.96617 * 19 18 17 22 22 N 1.31284 * 120.00043 * 359.72316 * 21 19 18 23 23 Si 1.86801 * 119.99884 * 179.72361 * 21 19 18 24 24 H 1.48504 * 109.46920 * 59.99981 * 23 21 19 25 25 H 1.48504 * 109.46970 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47038 * 299.99751 * 23 21 19 27 27 C 1.35786 * 126.10045 * 180.02562 * 15 14 12 28 28 H 1.08999 * 109.47157 * 299.99772 * 1 2 3 29 29 H 1.09005 * 109.47479 * 60.00098 * 1 2 3 30 30 H 1.09007 * 109.47092 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47319 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47497 * 300.00215 * 3 2 1 33 33 H 1.09003 * 109.47464 * 60.00308 * 3 2 1 34 34 H 1.08998 * 109.47313 * 299.99678 * 4 2 1 35 35 H 1.09005 * 109.46974 * 60.00270 * 4 2 1 36 36 H 1.09005 * 109.46595 * 179.97438 * 4 2 1 37 37 H 1.09001 * 109.47290 * 60.00326 * 6 5 2 38 38 H 1.08998 * 109.47401 * 299.99548 * 6 5 2 39 39 H 1.09004 * 109.47056 * 60.00217 * 7 6 5 40 40 H 1.09001 * 109.47389 * 300.00127 * 7 6 5 41 41 H 1.08996 * 109.47079 * 59.99774 * 8 7 6 42 42 H 1.09009 * 109.46758 * 300.00065 * 8 7 6 43 43 H 0.97005 * 119.99816 * 0.02562 * 9 8 7 44 44 H 0.97005 * 120.00106 * 0.02562 * 14 12 10 45 45 H 1.07994 * 125.80747 * 359.97438 * 16 15 14 46 46 H 0.97004 * 119.99619 * 180.02562 * 22 21 19 47 47 H 1.08006 * 126.25013 * 0.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0063 -0.6737 1.1667 6 6 1.5846 -2.0355 1.2644 7 6 2.1505 -2.6541 2.5443 8 6 1.6996 -4.1123 2.6487 9 7 2.2409 -4.7044 3.8745 10 6 1.9730 -5.9901 4.1772 11 8 1.2829 -6.6573 3.4345 12 6 2.5252 -6.5936 5.4263 13 8 3.2152 -5.9262 6.1694 14 7 2.2569 -7.8792 5.7292 15 6 2.7761 -8.4465 6.9026 16 6 3.5880 -7.7951 7.8496 17 7 3.8687 -8.6436 8.8057 18 7 3.2579 -9.8676 8.5050 19 6 3.3198 -11.0097 9.2645 20 1 2.8047 -11.9021 8.9408 21 6 4.0406 -11.0157 10.4531 22 7 4.6666 -9.9310 10.8466 23 14 4.1184 -12.5673 11.4903 24 1 4.7277 -13.6640 10.6956 25 1 4.9441 -12.3143 12.6984 26 1 2.7457 -12.9574 11.9013 27 6 2.5860 -9.7224 7.3264 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2492 35 1 1.6765 -0.2074 -2.1393 36 1 3.1300 -0.7209 -1.2495 37 1 1.9491 -2.5916 0.4007 38 1 0.4958 -2.0778 1.2907 39 1 1.7864 -2.0981 3.4083 40 1 3.2394 -2.6119 2.5177 41 1 2.0640 -4.6680 1.7847 42 1 0.6107 -4.1549 2.6752 43 1 2.7922 -4.1711 4.4683 44 1 1.7053 -8.4125 5.1356 45 1 3.9200 -6.7687 7.7979 46 1 5.1699 -9.9354 11.6759 47 1 2.0089 -10.4835 6.8223 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850639375.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:56 Heat of formation + Delta-G solvation = -65.917428 kcal Electronic energy + Delta-G solvation = -27802.164078 eV Core-core repulsion = 23600.114560 eV Total energy + Delta-G solvation = -4202.049518 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.02574 -41.17171 -40.04953 -39.43096 -37.01941 -36.00777 -35.03588 -34.56026 -32.41951 -32.27910 -29.91395 -28.53441 -28.28608 -27.55872 -26.63233 -24.72057 -22.92546 -22.67516 -21.72250 -21.21013 -20.87959 -19.63793 -19.12793 -17.77495 -17.45892 -17.38245 -17.32306 -16.75277 -16.71950 -16.45672 -15.77790 -15.76788 -15.62759 -15.32029 -14.98037 -14.85477 -14.82020 -14.24234 -14.23027 -13.52538 -13.50470 -13.38053 -13.00540 -12.97909 -12.91950 -12.88062 -12.71551 -12.64442 -12.58242 -12.51808 -12.35611 -12.12751 -11.96382 -11.84401 -11.34862 -11.05265 -10.87322 -10.60118 -10.42288 -10.33098 -10.13982 -8.62457 -8.48396 -6.26545 0.27834 1.27438 1.31022 1.42357 1.57752 1.73234 2.03950 2.12389 2.49196 2.53297 2.74402 2.98013 3.08074 3.52883 3.88195 3.89164 3.96518 3.98879 4.11672 4.21111 4.39797 4.45990 4.46516 4.52451 4.61220 4.66121 4.71330 4.82580 4.86001 4.95644 4.95808 4.97258 4.98228 5.05805 5.07327 5.16444 5.21268 5.23210 5.30688 5.37003 5.37768 5.89883 5.99115 6.24666 6.36389 6.47818 6.67375 6.78805 7.07042 7.41299 7.62839 8.50552 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.045536 B = 0.001465 C = 0.001435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.748165 B =19104.496177 C =19512.271048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.098 3.902 3 C -0.139 4.139 4 C -0.178 4.178 5 O -0.397 6.397 6 C 0.061 3.939 7 C -0.123 4.123 8 C 0.122 3.878 9 N -0.688 5.688 10 C 0.526 3.474 11 O -0.540 6.540 12 C 0.485 3.515 13 O -0.544 6.544 14 N -0.582 5.582 15 C -0.059 4.059 16 C -0.048 4.048 17 N -0.308 5.308 18 N -0.163 5.163 19 C -0.355 4.355 20 H 0.142 0.858 21 C -0.004 4.004 22 N -0.821 5.821 23 Si 1.020 2.980 24 H -0.254 1.254 25 H -0.277 1.277 26 H -0.254 1.254 27 C -0.075 4.075 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.420 0.580 44 H 0.424 0.576 45 H 0.176 0.824 46 H 0.278 0.722 47 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.087 15.771 -22.280 28.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.060 3.940 3 C -0.196 4.196 4 C -0.235 4.235 5 O -0.318 6.318 6 C -0.016 4.016 7 C -0.161 4.161 8 C 0.000 4.000 9 N -0.342 5.342 10 C 0.306 3.694 11 O -0.417 6.417 12 C 0.267 3.733 13 O -0.422 6.422 14 N -0.227 5.227 15 C -0.165 4.165 16 C -0.223 4.223 17 N -0.140 5.140 18 N 0.070 4.930 19 C -0.486 4.486 20 H 0.159 0.841 21 C -0.216 4.216 22 N -0.448 5.448 23 Si 0.838 3.162 24 H -0.178 1.178 25 H -0.202 1.202 26 H -0.178 1.178 27 C -0.225 4.225 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.257 0.743 44 H 0.261 0.739 45 H 0.193 0.807 46 H 0.088 0.912 47 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -7.240 15.809 -20.911 27.196 hybrid contribution -0.321 -0.397 -0.290 0.587 sum -7.561 15.412 -21.201 27.279 Atomic orbital electron populations 1.22435 0.94972 1.02875 1.03265 1.21692 0.93803 0.93444 0.85082 1.21797 1.01674 0.93053 1.03080 1.22433 1.01890 1.01271 0.97953 1.87922 1.75095 1.24467 1.44304 1.22367 0.99157 0.82769 0.97317 1.21580 1.02638 0.93058 0.98842 1.21425 0.99630 0.93210 0.85735 1.45684 1.52073 1.10652 1.25747 1.19601 0.81070 0.83443 0.85313 1.90740 1.38420 1.61644 1.50936 1.20285 0.82887 0.82667 0.87439 1.90651 1.38955 1.61319 1.51273 1.42079 1.48528 1.11048 1.21018 1.17312 1.11806 0.93888 0.93495 1.24249 1.03207 1.00761 0.94092 1.78160 1.22283 0.90680 1.22883 1.44836 1.27458 1.08104 1.12651 1.20638 1.35002 0.88842 1.04131 0.84066 1.26879 0.93958 1.02433 0.98361 1.70374 1.24168 1.29423 1.20866 0.84645 0.79552 0.75375 0.76603 1.17751 1.20196 1.17767 1.22008 1.09264 0.97969 0.93309 0.92286 0.90154 0.91911 0.92348 0.89417 0.92344 0.91907 0.90159 0.92283 0.91915 0.91907 0.90140 0.90146 0.90189 0.90200 0.74257 0.73862 0.80746 0.91230 0.79449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.68 8.25 71.98 0.59 -1.08 16 2 C 0.10 1.14 1.14 -10.79 -0.01 1.13 16 3 C -0.14 -1.41 8.84 71.98 0.64 -0.77 16 4 C -0.18 -1.68 8.25 71.98 0.59 -1.08 16 5 O -0.40 -6.34 9.99 -148.98 -1.49 -7.83 16 6 C 0.06 0.75 5.14 71.98 0.37 1.12 16 7 C -0.12 -1.61 5.70 30.59 0.17 -1.44 16 8 C 0.12 1.92 5.67 86.38 0.49 2.41 16 9 N -0.69 -14.73 5.55 -464.56 -2.58 -17.31 16 10 C 0.53 14.92 7.88 87.23 0.69 15.60 16 11 O -0.54 -16.54 16.47 -3.29 -0.05 -16.59 16 12 C 0.49 17.13 7.85 87.23 0.69 17.81 16 13 O -0.54 -21.93 13.62 -3.41 -0.05 -21.98 16 14 N -0.58 -21.39 5.45 -305.33 -1.66 -23.05 16 15 C -0.06 -2.71 6.90 37.83 0.26 -2.45 16 16 C -0.05 -2.54 10.85 85.44 0.93 -1.62 16 17 N -0.31 -18.33 10.39 -56.43 -0.59 -18.92 16 18 N -0.16 -8.96 3.73 -189.97 -0.71 -9.67 16 19 C -0.36 -18.62 10.25 84.02 0.86 -17.76 16 20 H 0.14 6.39 7.83 -2.91 -0.02 6.37 16 21 C 0.00 -0.21 5.50 84.96 0.47 0.26 16 22 N -0.82 -46.70 11.81 21.66 0.26 -46.44 16 23 Si 1.02 38.02 29.55 68.60 2.03 40.04 16 24 H -0.25 -8.85 7.11 99.48 0.71 -8.14 16 25 H -0.28 -10.23 7.11 99.48 0.71 -9.52 16 26 H -0.25 -8.86 7.11 99.48 0.71 -8.15 16 27 C -0.07 -3.46 11.50 83.41 0.96 -2.50 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.06 0.56 6.54 -2.38 -0.02 0.55 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 0.57 6.54 -2.39 -0.02 0.55 16 35 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 36 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 37 H 0.06 0.68 6.42 -2.39 -0.02 0.66 16 38 H 0.06 0.68 6.42 -2.39 -0.02 0.66 16 39 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 43 H 0.42 8.43 7.94 -92.70 -0.74 7.69 16 44 H 0.42 13.02 8.29 -92.70 -0.77 12.25 16 45 H 0.18 9.13 5.92 -2.91 -0.02 9.12 16 46 H 0.28 14.54 8.31 -92.71 -0.77 13.77 16 47 H 0.19 6.93 8.06 -2.91 -0.02 6.91 16 Total: -1.00 -73.17 393.43 2.36 -70.82 By element: Atomic # 1 Polarization: 41.78 SS G_CDS: -0.49 Total: 41.29 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 7.69 Total: 9.63 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -5.28 Total: -115.39 kcal Atomic # 8 Polarization: -44.81 SS G_CDS: -1.59 Total: -46.39 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 2.03 Total: 40.04 kcal Total: -73.17 2.36 -70.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850639375.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.898 kcal (2) G-P(sol) polarization free energy of solvation -73.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds