Wall clock time and date at job start Tue Mar 31 2020 21:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47103 * 2 1 4 4 C 1.53002 * 109.47497 * 240.00350 * 2 1 3 5 5 O 1.45195 * 109.47224 * 120.00099 * 2 1 3 6 6 C 1.34638 * 117.00135 * 60.00489 * 5 2 1 7 7 O 1.21513 * 119.99867 * 359.97438 * 6 5 2 8 8 N 1.34777 * 120.00235 * 180.02562 * 6 5 2 9 9 C 1.46498 * 119.99828 * 180.27525 * 8 6 5 10 10 C 1.50700 * 109.46769 * 179.72341 * 9 8 6 11 11 C 1.38230 * 120.41355 * 94.72946 * 10 9 8 12 12 C 1.39377 * 118.34949 * 179.72029 * 11 10 9 13 13 O 1.35521 * 120.51097 * 180.29821 * 12 11 10 14 14 N 1.32828 * 118.97824 * 0.53791 * 12 11 10 15 15 C 1.31765 * 120.71519 * 359.73989 * 14 12 11 16 16 C 1.50698 * 119.08949 * 179.97438 * 15 14 12 17 17 N 1.46902 * 109.47217 * 269.97012 * 16 15 14 18 18 C 1.46897 * 111.00145 * 179.97438 * 17 16 15 19 19 C 1.50694 * 109.47299 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99705 * 0.02562 * 19 18 17 21 21 C 1.37880 * 120.00526 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00355 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99595 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47218 * 90.00061 * 23 21 19 25 25 H 1.48501 * 109.47209 * 210.00525 * 23 21 19 26 26 H 1.48506 * 109.47167 * 329.99934 * 23 21 19 27 27 N 1.31788 * 121.81534 * 359.97221 * 15 14 12 28 28 H 1.08996 * 109.47509 * 299.99293 * 1 2 3 29 29 H 1.09006 * 109.47298 * 59.99979 * 1 2 3 30 30 H 1.09003 * 109.46856 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47042 * 179.97438 * 3 2 1 32 32 H 1.08992 * 109.47205 * 300.00164 * 3 2 1 33 33 H 1.09001 * 109.46587 * 60.00389 * 3 2 1 34 34 H 1.09003 * 109.46840 * 300.00288 * 4 2 1 35 35 H 1.09006 * 109.47115 * 59.99560 * 4 2 1 36 36 H 1.08995 * 109.47291 * 179.97438 * 4 2 1 37 37 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 38 38 H 1.09004 * 109.46963 * 299.72135 * 9 8 6 39 39 H 1.08994 * 109.47567 * 59.72287 * 9 8 6 40 40 H 1.07998 * 120.82561 * 359.96886 * 11 10 9 41 41 H 0.96695 * 113.99892 * 270.24672 * 13 12 11 42 42 H 1.09000 * 109.47662 * 29.97825 * 16 15 14 43 43 H 1.09000 * 109.46928 * 149.97922 * 16 15 14 44 44 H 1.00906 * 110.98972 * 56.05253 * 17 16 15 45 45 H 1.08995 * 109.47824 * 300.00873 * 18 17 16 46 46 H 1.09005 * 109.46509 * 60.00552 * 18 17 16 47 47 H 0.96999 * 120.00027 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3382 7 8 0.9510 -2.5095 0.5039 8 7 2.0673 -2.6655 2.4170 9 6 1.6788 -4.0686 2.5801 10 6 2.2739 -4.6097 3.8545 11 6 1.5387 -4.6103 5.0250 12 6 2.1292 -5.1264 6.1772 13 8 1.4460 -5.1540 7.3473 14 7 3.3735 -5.5864 6.1118 15 6 4.0413 -5.5619 4.9762 16 6 5.4514 -6.0927 4.9438 17 7 6.3914 -5.0042 5.2432 18 6 7.7790 -5.4860 5.2210 19 6 8.7121 -4.3444 5.5323 20 1 8.3141 -3.3595 5.7276 21 6 10.0739 -4.5570 5.5679 22 7 10.8882 -3.5609 5.8401 23 14 10.7623 -6.2603 5.2294 24 1 11.0279 -6.4069 3.7758 25 1 12.0279 -6.4418 5.9848 26 1 9.7782 -7.2863 5.6588 27 7 3.5102 -5.0859 3.8680 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6767 -1.7488 -1.2493 35 1 1.6767 -0.2073 -2.1393 36 1 3.1300 -0.7207 -1.2495 37 1 2.6269 -2.2366 3.0832 38 1 0.5922 -4.1415 2.6268 39 1 2.0457 -4.6481 1.7330 40 1 0.5303 -4.2242 5.0454 41 1 1.5553 -4.3581 7.8854 42 1 5.5599 -6.8816 5.6882 43 1 5.6653 -6.4954 3.9538 44 1 6.1733 -4.5715 6.1282 45 1 7.9033 -6.2704 5.9674 46 1 8.0093 -5.8848 4.2330 47 1 11.8462 -3.7106 5.8655 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853128890.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:15 Heat of formation + Delta-G solvation = -66.729848 kcal Electronic energy + Delta-G solvation = -28702.204694 eV Core-core repulsion = 24500.119947 eV Total energy + Delta-G solvation = -4202.084747 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.52109 -40.91507 -38.13285 -37.69749 -36.01879 -35.15812 -34.30967 -33.12610 -32.61081 -31.62136 -28.43782 -27.75513 -27.66952 -27.62397 -25.41514 -23.51077 -22.58537 -21.80662 -21.17398 -20.37051 -19.06463 -18.55184 -18.01013 -16.93653 -16.88216 -16.41448 -16.25089 -15.81155 -15.60252 -15.11845 -14.93011 -14.73714 -14.54253 -14.11748 -13.91589 -13.69879 -13.52416 -13.40614 -13.06642 -12.74522 -12.49818 -12.44708 -12.34306 -12.17384 -12.14954 -11.84263 -11.70307 -11.67996 -11.58713 -10.94316 -10.79250 -10.66145 -10.60795 -10.51776 -10.27546 -9.94065 -9.66303 -9.53278 -9.45877 -9.34820 -8.61624 -7.63223 -6.08411 -4.07112 0.51998 0.64699 1.97904 2.61721 3.02327 3.28403 3.35491 3.37161 3.46117 3.57602 3.93408 3.96878 4.39918 4.44604 4.49855 4.61034 4.63674 4.64256 4.82053 5.07781 5.16855 5.19836 5.21622 5.25271 5.27999 5.33015 5.40224 5.42752 5.53487 5.59808 5.72002 5.76875 5.82895 5.84816 6.01839 6.06654 6.12605 6.29094 6.67844 6.74468 6.94255 7.06549 7.12090 7.49891 7.75596 7.92877 8.12759 8.16559 8.58336 8.98574 9.52468 11.04736 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008655 B = 0.002629 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3234.366190 B =10648.918630 C =13021.609911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.136 3.864 3 C -0.142 4.142 4 C -0.185 4.185 5 O -0.361 6.361 6 C 0.656 3.344 7 O -0.569 6.569 8 N -0.704 5.704 9 C 0.194 3.806 10 C 0.164 3.836 11 C -0.231 4.231 12 C 0.363 3.637 13 O -0.477 6.477 14 N -0.527 5.527 15 C 0.367 3.633 16 C 0.119 3.881 17 N -0.668 5.668 18 C 0.166 3.834 19 C -0.517 4.517 20 H 0.079 0.921 21 C 0.070 3.930 22 N -0.899 5.899 23 Si 0.878 3.122 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.267 1.267 27 N -0.487 5.487 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.411 0.589 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.154 0.846 41 H 0.409 0.591 42 H 0.054 0.946 43 H 0.097 0.903 44 H 0.338 0.662 45 H -0.011 1.011 46 H 0.027 0.973 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.862 4.717 -7.572 26.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.100 3.900 3 C -0.199 4.199 4 C -0.242 4.242 5 O -0.276 6.276 6 C 0.410 3.590 7 O -0.458 6.458 8 N -0.364 5.364 9 C 0.071 3.929 10 C 0.018 3.982 11 C -0.255 4.255 12 C 0.174 3.826 13 O -0.284 6.284 14 N -0.252 5.252 15 C 0.100 3.900 16 C -0.013 4.013 17 N -0.300 5.300 18 C 0.039 3.961 19 C -0.555 4.555 20 H 0.097 0.903 21 C -0.132 4.132 22 N -0.538 5.538 23 Si 0.705 3.295 24 H -0.200 1.200 25 H -0.212 1.212 26 H -0.191 1.191 27 N -0.203 5.203 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.246 0.754 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.171 0.829 41 H 0.269 0.731 42 H 0.071 0.929 43 H 0.115 0.885 44 H 0.156 0.844 45 H 0.007 0.993 46 H 0.045 0.955 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -24.317 3.906 -8.836 26.166 hybrid contribution -0.009 -0.407 1.320 1.381 sum -24.326 3.500 -7.516 25.700 Atomic orbital electron populations 1.22520 0.94016 1.05005 1.02474 1.22101 0.94276 0.91600 0.82055 1.21874 1.02611 0.92374 1.03069 1.22528 1.01931 1.03416 0.96321 1.86332 1.71409 1.23329 1.46515 1.17919 0.78708 0.80639 0.81746 1.90905 1.41323 1.70521 1.43053 1.44484 1.56018 1.11592 1.24298 1.20039 0.99255 0.79832 0.93779 1.21418 0.89820 0.92826 0.94178 1.22772 1.04006 1.04907 0.93863 1.19419 0.86736 0.89598 0.86810 1.84706 1.67099 1.46086 1.30540 1.67887 1.08050 1.18409 1.30877 1.23203 0.96316 0.88837 0.81675 1.20771 0.83655 0.93841 1.02984 1.60559 1.03312 1.27398 1.38749 1.20041 0.84225 0.96015 0.95848 1.20987 0.90262 0.96349 1.47911 0.90311 1.24889 0.96861 0.96804 0.94689 1.69891 1.03435 1.31196 1.49267 0.86821 0.78732 0.85167 0.78799 1.20038 1.21185 1.19139 1.68180 1.11066 1.10444 1.30653 0.92198 0.91129 0.89387 0.91197 0.90113 0.91455 0.89355 0.91144 0.91877 0.75392 0.88829 0.88438 0.82859 0.73092 0.92851 0.88479 0.84426 0.99319 0.95508 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.53 8.37 37.16 0.31 -1.22 16 2 C 0.14 1.26 1.13 -90.62 -0.10 1.16 16 3 C -0.14 -1.01 8.85 37.16 0.33 -0.68 16 4 C -0.18 -1.72 8.37 37.16 0.31 -1.41 16 5 O -0.36 -4.11 9.94 -40.32 -0.40 -4.51 16 6 C 0.66 7.76 8.06 54.06 0.44 8.19 16 7 O -0.57 -7.50 11.88 -19.28 -0.23 -7.73 16 8 N -0.70 -7.28 5.55 -66.47 -0.37 -7.65 16 9 C 0.19 1.85 6.02 -5.19 -0.03 1.82 16 10 C 0.16 1.83 6.19 -82.31 -0.51 1.32 16 11 C -0.23 -2.23 9.79 -39.16 -0.38 -2.61 16 12 C 0.36 4.25 7.83 -16.70 -0.13 4.12 16 13 O -0.48 -4.49 13.58 -18.26 -0.25 -4.74 16 14 N -0.53 -7.78 10.36 -10.78 -0.11 -7.89 16 15 C 0.37 5.71 7.16 -157.23 -1.13 4.58 16 16 C 0.12 2.02 6.12 -4.98 -0.03 1.99 16 17 N -0.67 -13.74 6.48 -116.34 -0.75 -14.50 16 18 C 0.17 3.96 4.51 -4.98 -0.02 3.94 16 19 C -0.52 -14.66 9.87 -34.44 -0.34 -15.00 16 20 H 0.08 2.43 8.06 -52.48 -0.42 2.00 16 21 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 22 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 23 Si 0.88 21.34 27.47 -169.99 -4.67 16.67 16 24 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 27 N -0.49 -7.04 10.27 -7.05 -0.07 -7.11 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.91 5.88 -51.93 -0.31 0.60 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 1.00 5.88 -51.93 -0.31 0.69 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.41 4.11 8.57 -40.82 -0.35 3.76 16 38 H 0.09 0.71 8.06 -51.93 -0.42 0.29 16 39 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.41 1.82 9.06 45.56 0.41 2.23 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 44 H 0.34 6.90 8.71 -39.29 -0.34 6.56 16 45 H -0.01 -0.26 7.20 -51.93 -0.37 -0.63 16 46 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 47 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 394.76 15.07 5.95 5.95 Total: -1.00 -34.54 394.76 -7.83 -42.38 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -6.32 Total: 7.73 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: -1.39 Total: 8.12 kcal Atomic # 7 Polarization: -63.32 SS G_CDS: -0.53 Total: -63.86 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.88 Total: -16.98 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.54 -7.83 -42.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853128890.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.352 kcal (2) G-P(sol) polarization free energy of solvation -34.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds