Wall clock time and date at job start Tue Mar 31 2020 21:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47103 * 2 1 4 4 C 1.53002 * 109.47497 * 240.00350 * 2 1 3 5 5 O 1.45195 * 109.47224 * 120.00099 * 2 1 3 6 6 C 1.34638 * 117.00135 * 60.00489 * 5 2 1 7 7 O 1.21513 * 119.99867 * 359.97438 * 6 5 2 8 8 N 1.34777 * 120.00235 * 180.02562 * 6 5 2 9 9 C 1.46498 * 119.99828 * 180.27525 * 8 6 5 10 10 C 1.50700 * 109.46769 * 179.72341 * 9 8 6 11 11 C 1.38230 * 120.41355 * 94.72946 * 10 9 8 12 12 C 1.39377 * 118.34949 * 179.72029 * 11 10 9 13 13 O 1.35521 * 120.51097 * 180.29821 * 12 11 10 14 14 N 1.32828 * 118.97824 * 0.53791 * 12 11 10 15 15 C 1.31765 * 120.71519 * 359.73989 * 14 12 11 16 16 C 1.50698 * 119.08949 * 179.97438 * 15 14 12 17 17 N 1.46902 * 109.47217 * 269.97012 * 16 15 14 18 18 C 1.46897 * 111.00145 * 179.97438 * 17 16 15 19 19 C 1.50694 * 109.47299 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99705 * 0.02562 * 19 18 17 21 21 C 1.37880 * 120.00526 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00355 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99595 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47218 * 90.00061 * 23 21 19 25 25 H 1.48501 * 109.47209 * 210.00525 * 23 21 19 26 26 H 1.48506 * 109.47167 * 329.99934 * 23 21 19 27 27 N 1.31788 * 121.81534 * 359.97221 * 15 14 12 28 28 H 1.08996 * 109.47509 * 299.99293 * 1 2 3 29 29 H 1.09006 * 109.47298 * 59.99979 * 1 2 3 30 30 H 1.09003 * 109.46856 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47042 * 179.97438 * 3 2 1 32 32 H 1.08992 * 109.47205 * 300.00164 * 3 2 1 33 33 H 1.09001 * 109.46587 * 60.00389 * 3 2 1 34 34 H 1.09003 * 109.46840 * 300.00288 * 4 2 1 35 35 H 1.09006 * 109.47115 * 59.99560 * 4 2 1 36 36 H 1.08995 * 109.47291 * 179.97438 * 4 2 1 37 37 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 38 38 H 1.09004 * 109.46963 * 299.72135 * 9 8 6 39 39 H 1.08994 * 109.47567 * 59.72287 * 9 8 6 40 40 H 1.07998 * 120.82561 * 359.96886 * 11 10 9 41 41 H 0.96695 * 113.99892 * 270.24672 * 13 12 11 42 42 H 1.09000 * 109.47662 * 29.97825 * 16 15 14 43 43 H 1.09000 * 109.46928 * 149.97922 * 16 15 14 44 44 H 1.00906 * 110.98972 * 56.05253 * 17 16 15 45 45 H 1.08995 * 109.47824 * 300.00873 * 18 17 16 46 46 H 1.09005 * 109.46509 * 60.00552 * 18 17 16 47 47 H 0.96999 * 120.00027 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3382 7 8 0.9510 -2.5095 0.5039 8 7 2.0673 -2.6655 2.4170 9 6 1.6788 -4.0686 2.5801 10 6 2.2739 -4.6097 3.8545 11 6 1.5387 -4.6103 5.0250 12 6 2.1292 -5.1264 6.1772 13 8 1.4460 -5.1540 7.3473 14 7 3.3735 -5.5864 6.1118 15 6 4.0413 -5.5619 4.9762 16 6 5.4514 -6.0927 4.9438 17 7 6.3914 -5.0042 5.2432 18 6 7.7790 -5.4860 5.2210 19 6 8.7121 -4.3444 5.5323 20 1 8.3141 -3.3595 5.7276 21 6 10.0739 -4.5570 5.5679 22 7 10.8882 -3.5609 5.8401 23 14 10.7623 -6.2603 5.2294 24 1 11.0279 -6.4069 3.7758 25 1 12.0279 -6.4418 5.9848 26 1 9.7782 -7.2863 5.6588 27 7 3.5102 -5.0859 3.8680 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6767 -1.7488 -1.2493 35 1 1.6767 -0.2073 -2.1393 36 1 3.1300 -0.7207 -1.2495 37 1 2.6269 -2.2366 3.0832 38 1 0.5922 -4.1415 2.6268 39 1 2.0457 -4.6481 1.7330 40 1 0.5303 -4.2242 5.0454 41 1 1.5553 -4.3581 7.8854 42 1 5.5599 -6.8816 5.6882 43 1 5.6653 -6.4954 3.9538 44 1 6.1733 -4.5715 6.1282 45 1 7.9033 -6.2704 5.9674 46 1 8.0093 -5.8848 4.2330 47 1 11.8462 -3.7106 5.8655 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853128890.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:14 Heat of formation + Delta-G solvation = -97.916881 kcal Electronic energy + Delta-G solvation = -28703.557066 eV Core-core repulsion = 24500.119947 eV Total energy + Delta-G solvation = -4203.437118 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.47167 -41.76610 -38.93353 -38.55045 -37.36473 -36.29858 -35.13619 -34.59232 -34.00627 -32.82595 -30.10051 -28.63043 -28.32212 -28.26602 -26.97607 -24.40685 -23.64438 -23.14471 -22.68212 -21.18091 -19.96085 -19.42593 -19.02177 -18.84060 -17.71633 -17.28678 -17.26513 -16.78745 -16.64802 -16.35512 -16.10595 -15.77623 -15.58921 -15.45627 -15.21927 -14.76366 -14.45057 -14.34644 -14.30352 -14.13896 -13.50592 -13.35793 -13.31848 -13.14650 -13.02965 -12.87927 -12.83896 -12.65243 -12.49715 -12.44128 -12.32848 -11.87812 -11.76665 -11.67180 -11.50533 -11.37078 -11.12972 -10.80713 -10.62282 -10.46391 -10.33992 -9.27523 -8.29940 -6.35018 -0.40851 -0.26241 1.17214 1.37770 1.38957 1.49814 1.72703 2.15154 2.35044 2.48856 2.63568 2.99281 3.04479 3.17516 3.60059 3.75316 3.77735 3.83235 3.85248 3.97770 4.01396 4.21657 4.35873 4.44004 4.59199 4.60721 4.61685 4.65641 4.76901 4.79369 4.80500 4.88499 4.90923 4.99965 5.03801 5.07808 5.19843 5.31914 5.36910 5.48776 5.54428 5.80502 5.86336 6.26189 6.43138 6.46670 6.52824 6.72002 6.93914 7.26060 7.29407 8.86767 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008655 B = 0.002629 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3234.366190 B =10648.918630 C =13021.609911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.124 3.876 3 C -0.139 4.139 4 C -0.182 4.182 5 O -0.372 6.372 6 C 0.653 3.347 7 O -0.585 6.585 8 N -0.700 5.700 9 C 0.199 3.801 10 C 0.162 3.838 11 C -0.205 4.205 12 C 0.358 3.642 13 O -0.478 6.478 14 N -0.551 5.551 15 C 0.350 3.650 16 C 0.123 3.877 17 N -0.676 5.676 18 C 0.177 3.823 19 C -0.528 4.528 20 H 0.036 0.964 21 C 0.009 3.991 22 N -0.947 5.947 23 Si 0.951 3.049 24 H -0.265 1.265 25 H -0.282 1.282 26 H -0.247 1.247 27 N -0.510 5.510 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.054 0.946 37 H 0.412 0.588 38 H 0.121 0.879 39 H 0.087 0.913 40 H 0.193 0.807 41 H 0.430 0.570 42 H 0.059 0.941 43 H 0.099 0.901 44 H 0.336 0.664 45 H -0.005 1.005 46 H 0.032 0.968 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.892 4.070 -8.023 28.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.088 3.912 3 C -0.196 4.196 4 C -0.239 4.239 5 O -0.287 6.287 6 C 0.407 3.593 7 O -0.476 6.476 8 N -0.360 5.360 9 C 0.076 3.924 10 C 0.016 3.984 11 C -0.228 4.228 12 C 0.170 3.830 13 O -0.289 6.289 14 N -0.277 5.277 15 C 0.082 3.918 16 C -0.008 4.008 17 N -0.307 5.307 18 C 0.048 3.952 19 C -0.566 4.566 20 H 0.054 0.946 21 C -0.189 4.189 22 N -0.588 5.588 23 Si 0.774 3.226 24 H -0.190 1.190 25 H -0.207 1.207 26 H -0.170 1.170 27 N -0.227 5.227 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.122 0.878 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.111 0.889 36 H 0.074 0.926 37 H 0.247 0.753 38 H 0.139 0.861 39 H 0.105 0.895 40 H 0.210 0.790 41 H 0.294 0.706 42 H 0.077 0.923 43 H 0.118 0.882 44 H 0.153 0.847 45 H 0.013 0.987 46 H 0.050 0.950 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -26.391 3.279 -9.270 28.163 hybrid contribution 0.474 -0.073 1.493 1.568 sum -25.916 3.206 -7.776 27.247 Atomic orbital electron populations 1.22457 0.93216 1.03985 1.03730 1.22443 0.95062 0.92438 0.81267 1.21906 1.02188 0.91042 1.04429 1.22494 1.01383 1.02452 0.97553 1.86340 1.71626 1.23151 1.47560 1.18044 0.78649 0.80837 0.81797 1.90898 1.42140 1.70892 1.43639 1.44506 1.55745 1.11795 1.23936 1.20108 1.00537 0.79108 0.92637 1.21654 0.88980 0.92464 0.95303 1.23072 1.05084 1.02504 0.92157 1.19648 0.86007 0.89187 0.88155 1.84680 1.66335 1.47707 1.30154 1.67793 1.09720 1.19475 1.30729 1.22691 0.95919 0.90675 0.82497 1.20683 0.84145 0.92836 1.03111 1.60396 1.02569 1.29096 1.38684 1.19788 0.85259 0.94196 0.95908 1.21263 0.91527 0.96096 1.47757 0.94607 1.25875 0.97174 1.01558 0.94295 1.70048 1.03970 1.33980 1.50781 0.85656 0.78219 0.79651 0.79063 1.19014 1.20718 1.17010 1.68094 1.12839 1.11172 1.30559 0.91729 0.89076 0.91444 0.91884 0.87758 0.91086 0.91573 0.88904 0.92649 0.75257 0.86145 0.89474 0.78983 0.70615 0.92302 0.88233 0.84675 0.98718 0.95024 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.70 8.37 71.98 0.60 -2.10 16 2 C 0.12 2.17 1.13 -10.79 -0.01 2.16 16 3 C -0.14 -1.74 8.85 71.98 0.64 -1.11 16 4 C -0.18 -3.27 8.37 71.98 0.60 -2.67 16 5 O -0.37 -8.32 9.94 -55.48 -0.55 -8.87 16 6 C 0.65 15.13 8.06 129.79 1.05 16.17 16 7 O -0.59 -15.25 11.88 19.80 0.24 -15.01 16 8 N -0.70 -13.85 5.55 -594.61 -3.30 -17.16 16 9 C 0.20 3.48 6.02 85.63 0.52 3.99 16 10 C 0.16 3.32 6.19 42.46 0.26 3.58 16 11 C -0.20 -3.36 9.79 22.54 0.22 -3.14 16 12 C 0.36 7.64 7.83 84.82 0.66 8.30 16 13 O -0.48 -7.77 13.58 -88.24 -1.20 -8.97 16 14 N -0.55 -15.75 10.36 -300.68 -3.12 -18.86 16 15 C 0.35 10.74 7.16 138.76 0.99 11.73 16 16 C 0.12 4.15 6.12 85.56 0.52 4.68 16 17 N -0.68 -28.11 6.48 -522.00 -3.38 -31.49 16 18 C 0.18 8.41 4.51 85.56 0.39 8.79 16 19 C -0.53 -30.74 9.87 25.60 0.25 -30.49 16 20 H 0.04 2.32 8.06 -2.91 -0.02 2.30 16 21 C 0.01 0.50 5.47 84.66 0.46 0.96 16 22 N -0.95 -59.40 13.96 21.45 0.30 -59.10 16 23 Si 0.95 43.80 27.47 68.60 1.88 45.68 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 25 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 26 H -0.25 -10.48 6.54 99.48 0.65 -9.83 16 27 N -0.51 -14.41 10.27 -176.22 -1.81 -16.22 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.07 1.34 5.88 -2.39 -0.01 1.33 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.07 1.51 5.88 -2.39 -0.01 1.49 16 35 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.41 7.96 8.57 -92.71 -0.79 7.17 16 38 H 0.12 1.49 8.06 -2.38 -0.02 1.47 16 39 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.19 1.61 8.06 -2.91 -0.02 1.59 16 41 H 0.43 2.69 9.06 -74.06 -0.67 2.02 16 42 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 44 H 0.34 14.06 8.71 -89.69 -0.78 13.28 16 45 H 0.00 -0.22 7.20 -2.39 -0.02 -0.24 16 46 H 0.03 1.48 7.57 -2.38 -0.02 1.46 16 47 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -76.85 394.76 -5.06 -81.91 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: -1.28 Total: 27.20 kcal Atomic # 6 Polarization: 13.72 SS G_CDS: 7.16 Total: 20.88 kcal Atomic # 7 Polarization: -131.51 SS G_CDS: -11.31 Total: -142.82 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -1.51 Total: -32.85 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.88 Total: 45.68 kcal Total: -76.85 -5.06 -81.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853128890.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.006 kcal (2) G-P(sol) polarization free energy of solvation -76.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds