Wall clock time and date at job start Tue Mar 31 2020 21:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47186 * 2 1 4 4 C 1.52990 * 109.47540 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.46851 * 305.82108 * 4 3 2 6 6 C 1.53003 * 109.47562 * 185.82480 * 4 3 2 7 7 N 1.46498 * 109.47285 * 179.97438 * 6 4 3 8 8 C 1.34775 * 119.99845 * 179.97438 * 7 6 4 9 9 O 1.21370 * 120.00195 * 0.02562 * 8 7 6 10 10 C 1.49310 * 120.00001 * 179.97438 * 8 7 6 11 11 O 1.21407 * 119.99519 * 0.02562 * 10 8 7 12 12 N 1.34775 * 120.00001 * 179.97438 * 10 8 7 13 13 C 1.40294 * 119.99927 * 180.02562 * 12 10 8 14 14 C 1.40719 * 126.10108 * 359.70274 * 13 12 10 15 15 N 1.30871 * 108.37877 * 179.80872 * 14 13 12 16 16 N 1.40066 * 108.43416 * 0.44115 * 15 14 13 17 17 C 1.37290 * 126.05629 * 179.69485 * 16 15 14 18 18 H 1.08004 * 120.00224 * 180.02562 * 17 16 15 19 19 C 1.39010 * 120.00140 * 0.02562 * 17 16 15 20 20 N 1.31282 * 119.99825 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99890 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46966 * 90.00973 * 21 19 17 23 23 H 1.48508 * 109.46862 * 210.00294 * 21 19 17 24 24 H 1.48500 * 109.47421 * 330.00359 * 21 19 17 25 25 C 1.35780 * 126.09859 * 180.02562 * 13 12 10 26 26 O 1.42895 * 109.47053 * 65.82053 * 4 3 2 27 27 C 1.42901 * 114.00186 * 258.90329 * 26 4 3 28 28 C 1.53001 * 109.47275 * 174.89181 * 27 26 4 29 29 H 1.08999 * 109.47426 * 299.99763 * 1 2 3 30 30 H 1.09004 * 109.47017 * 60.00304 * 1 2 3 31 31 H 1.08997 * 109.46786 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47426 * 240.00237 * 2 1 3 33 33 H 1.08991 * 109.47302 * 119.99587 * 2 1 3 34 34 H 1.09001 * 109.46875 * 59.96929 * 3 2 1 35 35 H 1.09003 * 109.46636 * 299.97704 * 3 2 1 36 36 H 1.09001 * 109.46405 * 300.00079 * 6 4 3 37 37 H 1.09001 * 109.46726 * 59.99398 * 6 4 3 38 38 H 0.97003 * 120.00102 * 359.97438 * 7 6 4 39 39 H 0.97003 * 120.00053 * 0.02562 * 12 10 8 40 40 H 1.08002 * 125.80826 * 359.97002 * 14 13 12 41 41 H 0.96999 * 119.99752 * 179.97438 * 20 19 17 42 42 H 1.07997 * 126.25424 * 359.97438 * 25 13 12 43 43 H 1.09001 * 109.47510 * 294.89346 * 27 26 4 44 44 H 1.08999 * 109.47252 * 54.89483 * 27 26 4 45 45 H 1.08999 * 109.47215 * 60.00210 * 28 27 26 46 46 H 1.08999 * 109.47594 * 180.02562 * 28 27 26 47 47 H 1.09001 * 109.46987 * 300.00485 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9329 0.8413 0.8342 6 6 4.0799 2.8777 0.1470 7 7 5.5449 2.8777 0.1483 8 6 6.2186 4.0389 0.2664 9 8 5.6117 5.0847 0.3723 10 6 7.7117 4.0389 0.2682 11 8 8.3188 2.9928 0.1628 12 7 8.3855 5.2002 0.3859 13 6 9.7885 5.2001 0.3871 14 6 10.6177 4.0683 0.2796 15 7 11.8643 4.4652 0.3144 16 7 11.8816 5.8587 0.4551 17 6 13.0014 6.6488 0.5361 18 1 12.9008 7.7187 0.6443 19 6 14.2648 6.0719 0.4787 20 7 14.3872 4.7715 0.3466 21 14 15.7884 7.1470 0.5882 22 1 16.1913 7.2912 2.0102 23 1 16.8941 6.5182 -0.1782 24 1 15.4912 8.4863 0.0196 25 6 10.5884 6.2917 0.4983 26 8 4.0468 0.8907 -1.2281 27 6 4.4775 -0.4681 -1.1266 28 6 4.8444 -0.9921 -2.5164 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8899 34 1 1.6762 1.9565 0.8897 35 1 1.6770 1.9562 -0.8902 36 1 3.7168 3.4790 -0.6865 37 1 3.7161 3.2987 1.0843 38 1 6.0300 2.0419 0.0640 39 1 7.9004 6.0360 0.4697 40 1 10.2824 3.0463 0.1821 41 1 15.2687 4.3689 0.3062 42 1 10.2609 7.3156 0.6013 43 1 5.3493 -0.5253 -0.4749 44 1 3.6727 -1.0743 -0.7106 45 1 5.6492 -0.3860 -2.9324 46 1 5.1725 -2.0286 -2.4391 47 1 3.9725 -0.9349 -3.1681 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861938195.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:25 Heat of formation + Delta-G solvation = -46.292692 kcal Electronic energy + Delta-G solvation = -28589.093175 eV Core-core repulsion = 24387.894649 eV Total energy + Delta-G solvation = -4201.198525 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.50968 -39.62860 -39.02033 -37.83523 -35.36764 -34.90934 -34.11597 -33.15150 -31.87892 -30.32373 -29.93094 -28.09836 -26.89205 -25.19971 -23.80934 -23.08100 -21.99424 -21.54207 -21.00496 -20.20955 -19.45789 -18.24037 -17.49055 -17.40457 -16.52842 -16.06286 -15.64503 -15.58322 -15.41404 -15.13833 -15.02101 -14.35917 -14.23247 -13.99460 -13.81947 -13.56312 -13.43174 -13.36946 -13.03105 -12.97831 -12.60108 -12.32604 -12.27711 -12.03337 -11.73547 -11.61260 -11.54355 -11.36151 -11.28740 -11.22775 -11.11994 -10.94631 -10.84934 -10.55322 -10.28017 -9.81748 -9.28024 -9.22131 -9.10718 -8.86878 -8.12249 -6.77033 -6.60023 -4.27192 1.68114 2.60043 2.93739 3.04139 3.09009 3.26903 3.35262 3.73084 3.75744 3.96686 4.26174 4.38169 4.49804 4.53664 4.63777 4.71120 4.74905 4.85674 4.98648 4.99143 5.04332 5.09018 5.14697 5.20181 5.22873 5.40637 5.44840 5.51583 5.57561 5.65332 5.71911 5.79374 5.89164 5.91611 6.17925 6.21101 6.36937 6.76540 6.89335 6.89535 6.93105 7.16896 7.23230 7.77220 7.86938 8.11783 8.19259 8.49942 8.70446 9.31928 9.60545 10.35827 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.027082 B = 0.001865 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.660652 B =15011.300162 C =15838.939919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.135 4.135 4 C 0.078 3.922 5 H 0.071 0.929 6 C 0.118 3.882 7 N -0.699 5.699 8 C 0.515 3.485 9 O -0.530 6.530 10 C 0.484 3.516 11 O -0.523 6.523 12 N -0.584 5.584 13 C -0.069 4.069 14 C -0.027 4.027 15 N -0.261 5.261 16 N -0.138 5.138 17 C -0.322 4.322 18 H 0.118 0.882 19 C 0.046 3.954 20 N -0.768 5.768 21 Si 0.936 3.064 22 H -0.270 1.270 23 H -0.275 1.275 24 H -0.263 1.263 25 C -0.077 4.077 26 O -0.375 6.375 27 C 0.051 3.949 28 C -0.153 4.153 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.414 0.586 39 H 0.409 0.591 40 H 0.178 0.822 41 H 0.276 0.724 42 H 0.149 0.851 43 H 0.051 0.949 44 H 0.052 0.948 45 H 0.066 0.934 46 H 0.070 0.930 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.430 -8.565 -0.520 24.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.173 4.173 4 C 0.019 3.981 5 H 0.089 0.911 6 C -0.006 4.006 7 N -0.353 5.353 8 C 0.297 3.703 9 O -0.406 6.406 10 C 0.265 3.735 11 O -0.401 6.401 12 N -0.226 5.226 13 C -0.175 4.175 14 C -0.202 4.202 15 N -0.091 5.091 16 N 0.095 4.905 17 C -0.454 4.454 18 H 0.136 0.864 19 C -0.171 4.171 20 N -0.394 5.394 21 Si 0.760 3.240 22 H -0.195 1.195 23 H -0.200 1.200 24 H -0.187 1.187 25 C -0.229 4.229 26 O -0.295 6.295 27 C -0.026 4.026 28 C -0.210 4.210 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.250 0.750 39 H 0.244 0.756 40 H 0.194 0.806 41 H 0.086 0.914 42 H 0.167 0.833 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.085 0.915 46 H 0.089 0.911 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.030 -9.000 -0.759 22.888 hybrid contribution -0.334 0.656 0.317 0.801 sum -21.364 -8.344 -0.442 22.940 Atomic orbital electron populations 1.21758 0.95554 1.01655 1.01932 1.21600 0.96229 0.96514 1.02126 1.22014 0.93930 0.97910 1.03444 1.22383 0.94206 0.93714 0.87783 0.91109 1.21645 0.79553 0.96167 1.03204 1.45554 1.06975 1.09867 1.72857 1.20276 0.88826 0.84043 0.77205 1.90731 1.70221 1.31232 1.48437 1.19637 0.87372 0.84775 0.81717 1.90651 1.68776 1.31167 1.49472 1.42144 1.05103 1.08691 1.66678 1.17257 0.80712 0.94844 1.24692 1.24140 0.89959 0.98803 1.07325 1.78258 1.16974 0.88480 1.25425 1.44559 1.03011 1.04789 1.38167 1.19927 0.81983 0.90918 1.52616 0.86433 1.25666 0.99823 0.96249 0.95386 1.70209 1.24954 1.09608 1.34641 0.85804 0.79639 0.79635 0.78952 1.19537 1.20043 1.18735 1.21305 0.85091 0.97324 1.19141 1.87991 1.83139 1.26904 1.31436 1.22694 0.98308 0.82861 0.98711 1.21746 1.02524 1.00849 0.95856 0.92698 0.92606 0.92770 0.91354 0.92165 0.90554 0.90499 0.90169 0.89794 0.75018 0.75584 0.80575 0.91366 0.83340 0.93069 0.92961 0.91476 0.91103 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.16 0.37 -0.42 16 2 C -0.13 -0.73 5.02 -26.73 -0.13 -0.87 16 3 C -0.13 -0.85 4.92 -26.73 -0.13 -0.98 16 4 C 0.08 0.60 2.35 -26.73 -0.06 0.54 16 5 H 0.07 0.49 7.70 -51.93 -0.40 0.09 16 6 C 0.12 1.15 5.37 -4.04 -0.02 1.13 16 7 N -0.70 -8.70 5.44 -60.77 -0.33 -9.03 16 8 C 0.52 8.04 7.88 -11.65 -0.09 7.95 16 9 O -0.53 -8.94 16.48 5.48 0.09 -8.85 16 10 C 0.48 8.95 7.85 -11.65 -0.09 8.86 16 11 O -0.52 -10.73 13.62 5.45 0.07 -10.66 16 12 N -0.58 -11.21 5.45 -10.46 -0.06 -11.27 16 13 C -0.07 -1.62 6.90 -83.93 -0.58 -2.19 16 14 C -0.03 -0.69 10.84 -17.02 -0.18 -0.88 16 15 N -0.26 -7.51 10.39 30.81 0.32 -7.19 16 16 N -0.14 -3.78 3.73 -11.40 -0.04 -3.83 16 17 C -0.32 -8.46 10.25 -14.82 -0.15 -8.62 16 18 H 0.12 2.75 7.83 -52.48 -0.41 2.34 16 19 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 20 N -0.77 -21.22 11.81 55.50 0.66 -20.57 16 21 Si 0.94 18.74 29.55 -169.99 -5.02 13.72 16 22 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 23 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 24 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 25 C -0.08 -1.83 11.50 -16.38 -0.19 -2.02 16 26 O -0.38 -3.54 9.50 -35.23 -0.33 -3.87 16 27 C 0.05 0.39 5.99 37.16 0.22 0.61 16 28 C -0.15 -1.13 10.28 37.16 0.38 -0.75 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.43 6.27 -51.93 -0.33 0.11 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.41 4.98 7.82 -40.82 -0.32 4.66 16 39 H 0.41 6.79 8.29 -40.82 -0.34 6.45 16 40 H 0.18 4.46 5.92 -52.49 -0.31 4.15 16 41 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.15 2.95 8.06 -52.49 -0.42 2.53 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.05 0.33 5.93 -51.93 -0.31 0.02 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 395.68 15.07 5.96 5.96 Total: -1.00 -32.88 395.68 -6.49 -39.37 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -7.04 Total: 12.75 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -0.76 Total: 3.46 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: 0.55 Total: -51.89 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.17 Total: -23.38 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.02 Total: 13.72 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.88 -6.49 -39.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861938195.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.925 kcal (2) G-P(sol) polarization free energy of solvation -32.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds