Wall clock time and date at job start Tue Mar 31 2020 21:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46862 * 2 1 4 4 C 1.52995 * 109.47269 * 120.00152 * 2 1 3 5 5 C 1.52998 * 109.47525 * 174.99887 * 4 2 1 6 6 C 1.52995 * 109.47525 * 179.97438 * 5 4 2 7 7 H 1.09002 * 109.46778 * 305.00076 * 6 5 4 8 8 C 1.52999 * 109.47236 * 185.00240 * 6 5 4 9 9 O 1.42900 * 109.46818 * 304.99982 * 8 6 5 10 10 N 1.46501 * 109.47176 * 64.99663 * 6 5 4 11 11 C 1.34769 * 120.00313 * 204.99867 * 10 6 5 12 12 O 1.21366 * 119.99965 * 0.02562 * 11 10 6 13 13 C 1.49311 * 120.00061 * 180.02562 * 11 10 6 14 14 O 1.21397 * 119.99795 * 359.97438 * 13 11 10 15 15 N 1.34777 * 119.99820 * 180.02562 * 13 11 10 16 16 C 1.40291 * 119.99916 * 179.97438 * 15 13 11 17 17 C 1.40728 * 126.10043 * 359.97438 * 16 15 13 18 18 N 1.30869 * 108.37411 * 179.77351 * 17 16 15 19 19 N 1.40064 * 108.43837 * 0.38012 * 18 17 16 20 20 C 1.37301 * 126.05474 * 179.87893 * 19 18 17 21 21 H 1.08002 * 119.99622 * 179.68469 * 20 19 18 22 22 C 1.39003 * 119.99972 * 359.96620 * 20 19 18 23 23 N 1.31284 * 120.00043 * 359.72316 * 22 20 19 24 24 Si 1.86801 * 119.99884 * 179.72361 * 22 20 19 25 25 H 1.48494 * 109.47230 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.46780 * 119.99905 * 24 22 20 27 27 H 1.48493 * 109.47151 * 239.99809 * 24 22 20 28 28 C 1.35786 * 126.10040 * 179.97438 * 16 15 13 29 29 H 1.08996 * 109.46765 * 300.00005 * 1 2 3 30 30 H 1.08999 * 109.46979 * 59.99508 * 1 2 3 31 31 H 1.09001 * 109.46935 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46765 * 239.99995 * 2 1 3 33 33 H 1.08995 * 109.47245 * 300.00049 * 3 2 1 34 34 H 1.08996 * 109.47434 * 60.00405 * 3 2 1 35 35 H 1.08999 * 109.46910 * 180.02562 * 3 2 1 36 36 H 1.09004 * 109.47276 * 54.99660 * 4 2 1 37 37 H 1.09009 * 109.47159 * 295.00192 * 4 2 1 38 38 H 1.09004 * 109.46506 * 59.99651 * 5 4 2 39 39 H 1.09004 * 109.46702 * 300.00417 * 5 4 2 40 40 H 1.09003 * 109.47104 * 64.99803 * 8 6 5 41 41 H 1.08998 * 109.46987 * 184.99746 * 8 6 5 42 42 H 0.96701 * 114.00027 * 180.02562 * 9 8 6 43 43 H 0.97001 * 119.99297 * 25.00665 * 10 6 5 44 44 H 0.97005 * 120.00098 * 0.02562 * 15 13 11 45 45 H 1.07994 * 125.80713 * 0.02562 * 17 16 15 46 46 H 0.97004 * 119.99619 * 180.02562 * 23 22 20 47 47 H 1.08006 * 126.25004 * 0.02562 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.8311 1.1879 6 6 4.0750 -1.5518 2.4374 7 1 3.7117 -1.0375 3.3272 8 6 5.6050 -1.5517 2.4374 9 8 6.0812 -2.1216 1.2165 10 7 3.5866 -2.9330 2.4381 11 6 3.4580 -3.6018 3.6011 12 8 3.7463 -3.0596 4.6479 13 6 2.9608 -5.0096 3.6016 14 8 2.6720 -5.5517 2.5545 15 7 2.8317 -5.6782 4.7647 16 6 2.3640 -7.0009 4.7653 17 6 1.9940 -7.7501 3.6330 18 7 1.6159 -8.9383 4.0300 19 7 1.7201 -8.9931 5.4257 20 6 1.4124 -10.0718 6.2174 21 1 1.5350 -10.0080 7.2885 22 6 0.9488 -11.2481 5.6397 23 7 0.7999 -11.3257 4.3376 24 14 0.5375 -12.7183 6.7161 25 1 0.7903 -12.3764 8.1388 26 1 -0.8928 -13.0765 6.5392 27 1 1.3883 -13.8710 6.3258 28 6 2.1876 -7.7866 5.8587 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9564 -0.8899 34 1 1.6768 1.9564 0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6054 -1.7198 1.2951 37 1 1.7517 -0.1583 2.1370 38 1 3.9995 0.1675 1.1420 39 1 3.8532 -1.3940 0.3001 40 1 5.9683 -0.5279 2.5265 41 1 5.9683 -2.1408 3.2794 42 1 7.0452 -2.1543 1.1474 43 1 3.3559 -3.3662 1.6014 44 1 3.0614 -5.2446 5.6015 45 1 2.0217 -7.4046 2.6101 46 1 0.4760 -12.1464 3.9346 47 1 2.3810 -7.5072 6.8839 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000862029849.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:15 Heat of formation + Delta-G solvation = -55.320599 kcal Electronic energy + Delta-G solvation = -28946.139054 eV Core-core repulsion = 24744.549049 eV Total energy + Delta-G solvation = -4201.590005 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.58245 -39.62358 -38.41815 -37.52199 -36.73123 -35.03424 -34.17930 -33.16187 -31.44004 -30.31272 -28.53857 -27.97352 -27.43662 -25.47386 -24.33434 -23.68088 -21.25495 -20.83080 -20.38472 -20.14484 -19.45567 -18.14363 -17.75372 -17.38868 -16.50451 -15.79369 -15.65493 -15.50168 -15.24657 -15.06114 -14.79346 -14.50693 -14.25451 -14.02088 -13.77601 -13.56109 -13.47036 -13.08170 -12.98749 -12.80972 -12.58637 -12.36811 -11.90531 -11.83706 -11.73949 -11.56923 -11.36788 -11.30268 -11.18559 -10.89103 -10.86022 -10.77329 -10.72659 -10.52708 -10.28260 -10.24295 -9.25711 -9.22495 -9.09655 -8.86541 -8.12066 -6.76841 -6.60006 -4.27124 1.67664 2.61841 2.92776 3.04200 3.09977 3.33930 3.72602 3.75855 3.97521 4.02795 4.27776 4.38399 4.59367 4.61492 4.63370 4.84697 4.87169 4.98630 5.00347 5.03826 5.10682 5.25451 5.36553 5.37821 5.44825 5.50626 5.54967 5.62151 5.70003 5.79909 5.91661 5.98652 6.10095 6.16691 6.20684 6.28669 6.37093 6.77118 6.89801 6.94024 7.17045 7.27129 7.35316 7.78097 7.87951 8.12209 8.19538 8.50424 8.70733 9.32079 9.60793 10.35861 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018848 B = 0.002090 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.180067 B =13392.450084 C =14172.788456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 C -0.149 4.149 4 C -0.119 4.119 5 C -0.122 4.122 6 C 0.147 3.853 7 H 0.102 0.898 8 C 0.062 3.938 9 O -0.567 6.567 10 N -0.690 5.690 11 C 0.516 3.484 12 O -0.534 6.534 13 C 0.483 3.517 14 O -0.521 6.521 15 N -0.584 5.584 16 C -0.069 4.069 17 C -0.027 4.027 18 N -0.260 5.260 19 N -0.139 5.139 20 C -0.321 4.321 21 H 0.118 0.882 22 C 0.046 3.954 23 N -0.767 5.767 24 Si 0.936 3.064 25 H -0.262 1.262 26 H -0.273 1.273 27 H -0.274 1.274 28 C -0.077 4.077 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.379 0.621 43 H 0.416 0.584 44 H 0.409 0.591 45 H 0.178 0.822 46 H 0.275 0.725 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.897 21.717 -5.148 23.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 C -0.206 4.206 4 C -0.157 4.157 5 C -0.160 4.160 6 C 0.042 3.958 7 H 0.120 0.880 8 C -0.017 4.017 9 O -0.372 6.372 10 N -0.343 5.343 11 C 0.297 3.703 12 O -0.411 6.411 13 C 0.264 3.736 14 O -0.398 6.398 15 N -0.227 5.227 16 C -0.175 4.175 17 C -0.202 4.202 18 N -0.091 5.091 19 N 0.094 4.906 20 C -0.454 4.454 21 H 0.136 0.864 22 C -0.172 4.172 23 N -0.394 5.394 24 Si 0.760 3.240 25 H -0.186 1.186 26 H -0.199 1.199 27 H -0.199 1.199 28 C -0.229 4.229 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.225 0.775 43 H 0.252 0.748 44 H 0.243 0.757 45 H 0.194 0.806 46 H 0.086 0.914 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.739 20.367 -5.803 21.701 hybrid contribution 0.829 0.316 1.021 1.353 sum 5.568 20.683 -4.782 21.946 Atomic orbital electron populations 1.21850 0.95247 1.01989 1.01551 1.21112 0.95748 0.96227 0.98451 1.21896 1.01064 0.96078 1.01559 1.21716 0.94956 1.01143 0.97881 1.21842 0.95844 1.00792 0.97516 1.21205 0.91761 0.82346 1.00478 0.87980 1.22639 0.94692 0.97303 0.87051 1.86482 1.26692 1.85147 1.38869 1.45714 1.65163 1.13849 1.09588 1.20319 0.78356 0.87410 0.84196 1.90716 1.49644 1.69357 1.31360 1.19664 0.82507 0.86674 0.84764 1.90658 1.49747 1.68322 1.31117 1.42148 1.60244 1.11806 1.08514 1.17257 1.19846 0.85571 0.94783 1.24150 1.05211 0.92054 0.98829 1.78258 1.25157 1.17341 0.88348 1.44572 1.34288 1.07055 1.04671 1.19967 1.45392 0.89284 0.90732 0.86405 1.25672 0.95743 0.99514 0.96255 1.70221 1.32729 1.26903 1.09523 0.85739 0.78649 0.79883 0.79748 1.18628 1.19863 1.19882 1.21302 1.15375 0.88966 0.97248 0.92784 0.92859 0.92474 0.91127 0.92975 0.92787 0.92493 0.91416 0.91885 0.90240 0.90168 0.92719 0.92899 0.77468 0.74752 0.75652 0.80558 0.91416 0.83373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.19 37.16 0.34 -0.79 16 2 C -0.10 -0.72 2.92 -90.62 -0.26 -0.98 16 3 C -0.15 -0.95 8.95 37.16 0.33 -0.62 16 4 C -0.12 -0.97 4.57 -26.73 -0.12 -1.10 16 5 C -0.12 -0.95 4.22 -26.73 -0.11 -1.06 16 6 C 0.15 1.40 2.37 -67.93 -0.16 1.24 16 7 H 0.10 1.01 7.58 -51.93 -0.39 0.62 16 8 C 0.06 0.54 6.85 37.16 0.25 0.80 16 9 O -0.57 -5.01 12.83 -35.23 -0.45 -5.46 16 10 N -0.69 -8.41 4.47 -54.29 -0.24 -8.66 16 11 C 0.52 7.84 7.85 -11.65 -0.09 7.74 16 12 O -0.53 -8.63 16.14 5.48 0.09 -8.54 16 13 C 0.48 8.87 7.85 -11.65 -0.09 8.78 16 14 O -0.52 -10.73 13.62 5.46 0.07 -10.66 16 15 N -0.58 -11.14 5.45 -10.45 -0.06 -11.20 16 16 C -0.07 -1.60 6.90 -83.92 -0.58 -2.18 16 17 C -0.03 -0.70 10.85 -17.02 -0.18 -0.88 16 18 N -0.26 -7.51 10.39 30.81 0.32 -7.19 16 19 N -0.14 -3.80 3.73 -11.40 -0.04 -3.84 16 20 C -0.32 -8.44 10.25 -14.82 -0.15 -8.59 16 21 H 0.12 2.77 7.83 -52.49 -0.41 2.36 16 22 C 0.05 1.17 5.50 -17.50 -0.10 1.07 16 23 N -0.77 -21.25 11.81 55.50 0.66 -20.60 16 24 Si 0.94 18.78 29.55 -169.99 -5.02 13.75 16 25 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 26 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 27 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 28 C -0.08 -1.83 11.50 -16.38 -0.19 -2.02 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.34 6.57 -51.93 -0.34 -0.01 16 36 H 0.07 0.65 7.75 -51.93 -0.40 0.25 16 37 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 38 H 0.08 0.52 6.57 -51.93 -0.34 0.17 16 39 H 0.08 0.69 7.73 -51.93 -0.40 0.29 16 40 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.38 1.86 9.12 45.56 0.42 2.27 16 43 H 0.42 5.09 8.07 -40.82 -0.33 4.76 16 44 H 0.41 6.71 8.29 -40.82 -0.34 6.37 16 45 H 0.18 4.49 5.92 -52.49 -0.31 4.18 16 46 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 47 H 0.15 2.94 8.06 -52.48 -0.42 2.51 16 LS Contribution 394.13 15.07 5.94 5.94 Total: -1.00 -33.23 394.13 -6.07 -39.30 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: -6.22 Total: 15.73 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -1.11 Total: 1.41 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: 0.63 Total: -51.48 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.29 Total: -24.65 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.02 Total: 13.75 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.23 -6.07 -39.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862029849.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.016 kcal (2) G-P(sol) polarization free energy of solvation -33.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds