Wall clock time and date at job start Tue Mar 31 2020 21:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46862 * 2 1 4 4 C 1.52995 * 109.47269 * 120.00152 * 2 1 3 5 5 C 1.52998 * 109.47525 * 174.99887 * 4 2 1 6 6 C 1.52995 * 109.47525 * 179.97438 * 5 4 2 7 7 H 1.09002 * 109.46778 * 305.00076 * 6 5 4 8 8 C 1.52999 * 109.47236 * 185.00240 * 6 5 4 9 9 O 1.42900 * 109.46818 * 304.99982 * 8 6 5 10 10 N 1.46501 * 109.47176 * 64.99663 * 6 5 4 11 11 C 1.34769 * 120.00313 * 204.99867 * 10 6 5 12 12 O 1.21366 * 119.99965 * 0.02562 * 11 10 6 13 13 C 1.49311 * 120.00061 * 180.02562 * 11 10 6 14 14 O 1.21397 * 119.99795 * 359.97438 * 13 11 10 15 15 N 1.34777 * 119.99820 * 180.02562 * 13 11 10 16 16 C 1.40291 * 119.99916 * 179.97438 * 15 13 11 17 17 C 1.40728 * 126.10043 * 359.97438 * 16 15 13 18 18 N 1.30869 * 108.37411 * 179.77351 * 17 16 15 19 19 N 1.40064 * 108.43837 * 0.38012 * 18 17 16 20 20 C 1.37301 * 126.05474 * 179.87893 * 19 18 17 21 21 H 1.08002 * 119.99622 * 179.68469 * 20 19 18 22 22 C 1.39003 * 119.99972 * 359.96620 * 20 19 18 23 23 N 1.31284 * 120.00043 * 359.72316 * 22 20 19 24 24 Si 1.86801 * 119.99884 * 179.72361 * 22 20 19 25 25 H 1.48494 * 109.47230 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.46780 * 119.99905 * 24 22 20 27 27 H 1.48493 * 109.47151 * 239.99809 * 24 22 20 28 28 C 1.35786 * 126.10040 * 179.97438 * 16 15 13 29 29 H 1.08996 * 109.46765 * 300.00005 * 1 2 3 30 30 H 1.08999 * 109.46979 * 59.99508 * 1 2 3 31 31 H 1.09001 * 109.46935 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46765 * 239.99995 * 2 1 3 33 33 H 1.08995 * 109.47245 * 300.00049 * 3 2 1 34 34 H 1.08996 * 109.47434 * 60.00405 * 3 2 1 35 35 H 1.08999 * 109.46910 * 180.02562 * 3 2 1 36 36 H 1.09004 * 109.47276 * 54.99660 * 4 2 1 37 37 H 1.09009 * 109.47159 * 295.00192 * 4 2 1 38 38 H 1.09004 * 109.46506 * 59.99651 * 5 4 2 39 39 H 1.09004 * 109.46702 * 300.00417 * 5 4 2 40 40 H 1.09003 * 109.47104 * 64.99803 * 8 6 5 41 41 H 1.08998 * 109.46987 * 184.99746 * 8 6 5 42 42 H 0.96701 * 114.00027 * 180.02562 * 9 8 6 43 43 H 0.97001 * 119.99297 * 25.00665 * 10 6 5 44 44 H 0.97005 * 120.00098 * 0.02562 * 15 13 11 45 45 H 1.07994 * 125.80713 * 0.02562 * 17 16 15 46 46 H 0.97004 * 119.99619 * 180.02562 * 23 22 20 47 47 H 1.08006 * 126.25004 * 0.02562 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.8311 1.1879 6 6 4.0750 -1.5518 2.4374 7 1 3.7117 -1.0375 3.3272 8 6 5.6050 -1.5517 2.4374 9 8 6.0812 -2.1216 1.2165 10 7 3.5866 -2.9330 2.4381 11 6 3.4580 -3.6018 3.6011 12 8 3.7463 -3.0596 4.6479 13 6 2.9608 -5.0096 3.6016 14 8 2.6720 -5.5517 2.5545 15 7 2.8317 -5.6782 4.7647 16 6 2.3640 -7.0009 4.7653 17 6 1.9940 -7.7501 3.6330 18 7 1.6159 -8.9383 4.0300 19 7 1.7201 -8.9931 5.4257 20 6 1.4124 -10.0718 6.2174 21 1 1.5350 -10.0080 7.2885 22 6 0.9488 -11.2481 5.6397 23 7 0.7999 -11.3257 4.3376 24 14 0.5375 -12.7183 6.7161 25 1 0.7903 -12.3764 8.1388 26 1 -0.8928 -13.0765 6.5392 27 1 1.3883 -13.8710 6.3258 28 6 2.1876 -7.7866 5.8587 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9564 -0.8899 34 1 1.6768 1.9564 0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6054 -1.7198 1.2951 37 1 1.7517 -0.1583 2.1370 38 1 3.9995 0.1675 1.1420 39 1 3.8532 -1.3940 0.3001 40 1 5.9683 -0.5279 2.5265 41 1 5.9683 -2.1408 3.2794 42 1 7.0452 -2.1543 1.1474 43 1 3.3559 -3.3662 1.6014 44 1 3.0614 -5.2446 5.6015 45 1 2.0217 -7.4046 2.6101 46 1 0.4760 -12.1464 3.9346 47 1 2.3810 -7.5072 6.8839 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000862029849.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:14 Heat of formation + Delta-G solvation = -80.851241 kcal Electronic energy + Delta-G solvation = -28947.246146 eV Core-core repulsion = 24744.549049 eV Total energy + Delta-G solvation = -4202.697096 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.05596 -41.26229 -39.73502 -38.57762 -37.36444 -36.30720 -35.57144 -34.93264 -32.36248 -32.25624 -29.92055 -29.16107 -27.97735 -27.21556 -25.67610 -24.57023 -22.95895 -22.09301 -21.55225 -21.24388 -20.79226 -19.62836 -19.16004 -18.45361 -17.60259 -17.45957 -17.00657 -16.76430 -16.71789 -16.01679 -15.78975 -15.68543 -15.33010 -15.30038 -14.92479 -14.88831 -14.81046 -14.56081 -14.15831 -13.60484 -13.52595 -13.38671 -13.21603 -12.97041 -12.94575 -12.94258 -12.57189 -12.50541 -12.45310 -12.02824 -11.99303 -11.96573 -11.47947 -11.42221 -11.39083 -11.08787 -10.92033 -10.87464 -10.54539 -10.24727 -10.14731 -8.62712 -8.49399 -6.27093 0.29167 1.28192 1.31545 1.42258 1.59964 1.71904 2.04147 2.11434 2.53241 2.58513 2.93553 3.07211 3.39725 3.51742 3.61916 3.94577 4.00928 4.19529 4.24608 4.36218 4.39119 4.49943 4.51962 4.59362 4.64191 4.79648 4.83620 4.87629 4.93560 4.95742 4.97979 5.01090 5.09409 5.17125 5.21404 5.26695 5.30297 5.34951 5.36562 5.54149 5.57446 5.90447 6.02882 6.24865 6.48441 6.66946 6.80134 6.89362 7.07792 7.41000 7.62253 8.50038 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018848 B = 0.002090 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.180067 B =13392.450084 C =14172.788456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.096 4.096 3 C -0.146 4.146 4 C -0.118 4.118 5 C -0.111 4.111 6 C 0.140 3.860 7 H 0.104 0.896 8 C 0.065 3.935 9 O -0.582 6.582 10 N -0.675 5.675 11 C 0.525 3.475 12 O -0.541 6.541 13 C 0.484 3.516 14 O -0.544 6.544 15 N -0.583 5.583 16 C -0.056 4.056 17 C -0.049 4.049 18 N -0.308 5.308 19 N -0.163 5.163 20 C -0.352 4.352 21 H 0.142 0.858 22 C -0.006 4.006 23 N -0.821 5.821 24 Si 1.020 2.980 25 H -0.241 1.241 26 H -0.272 1.272 27 H -0.272 1.272 28 C -0.075 4.075 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.048 0.952 37 H 0.064 0.936 38 H 0.101 0.899 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.036 0.964 42 H 0.395 0.605 43 H 0.416 0.584 44 H 0.423 0.577 45 H 0.174 0.826 46 H 0.278 0.722 47 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.825 23.537 -3.906 24.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.115 4.115 3 C -0.203 4.203 4 C -0.155 4.155 5 C -0.148 4.148 6 C 0.037 3.963 7 H 0.121 0.879 8 C -0.013 4.013 9 O -0.390 6.390 10 N -0.327 5.327 11 C 0.306 3.694 12 O -0.419 6.419 13 C 0.266 3.734 14 O -0.422 6.422 15 N -0.227 5.227 16 C -0.163 4.163 17 C -0.225 4.225 18 N -0.139 5.139 19 N 0.069 4.931 20 C -0.483 4.483 21 H 0.160 0.840 22 C -0.218 4.218 23 N -0.449 5.449 24 Si 0.839 3.161 25 H -0.164 1.164 26 H -0.197 1.197 27 H -0.197 1.197 28 C -0.225 4.225 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.120 0.880 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.054 0.946 42 H 0.245 0.755 43 H 0.253 0.747 44 H 0.261 0.739 45 H 0.191 0.809 46 H 0.088 0.912 47 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 5.704 22.254 -4.566 23.423 hybrid contribution 0.603 -0.055 0.536 0.809 sum 6.307 22.199 -4.030 23.427 Atomic orbital electron populations 1.21862 0.95601 1.01346 1.01948 1.21100 0.95483 0.97015 0.97859 1.21872 1.01542 0.95028 1.01869 1.21689 0.95281 1.00169 0.98397 1.21777 0.95384 1.01492 0.96168 1.21523 0.92823 0.80508 1.01487 0.87856 1.22589 0.93608 0.98706 0.86432 1.86439 1.28508 1.85340 1.38738 1.45791 1.63700 1.14772 1.08482 1.19628 0.78857 0.85920 0.85038 1.90721 1.50489 1.69016 1.31704 1.20367 0.81119 0.87939 0.84022 1.90648 1.50271 1.69285 1.32018 1.42085 1.60557 1.10400 1.09702 1.17300 1.18240 0.87025 0.93685 1.24236 1.06282 0.92346 0.99599 1.78155 1.26862 1.18855 0.90054 1.44855 1.35557 1.08471 1.04256 1.20701 1.46037 0.89685 0.91898 0.84035 1.26903 0.94766 1.02607 0.97568 1.70388 1.34483 1.28039 1.11977 0.84517 0.78050 0.75042 0.78484 1.16358 1.19709 1.19749 1.22003 1.13645 0.87818 0.99078 0.92719 0.92145 0.93646 0.91391 0.92581 0.92610 0.91678 0.93356 0.91758 0.88032 0.90771 0.89678 0.94601 0.75490 0.74748 0.73917 0.80893 0.91250 0.79444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.19 71.98 0.66 -1.52 16 2 C -0.10 -1.30 2.92 -10.79 -0.03 -1.33 16 3 C -0.15 -1.54 8.95 71.98 0.64 -0.89 16 4 C -0.12 -1.78 4.57 30.59 0.14 -1.64 16 5 C -0.11 -1.48 4.22 30.59 0.13 -1.36 16 6 C 0.14 2.41 2.37 44.99 0.11 2.51 16 7 H 0.10 1.81 7.58 -2.39 -0.02 1.80 16 8 C 0.07 0.98 6.85 71.98 0.49 1.47 16 9 O -0.58 -9.02 12.83 -148.98 -1.91 -10.94 16 10 N -0.68 -15.80 4.47 -444.02 -1.98 -17.78 16 11 C 0.53 15.46 7.85 87.23 0.68 16.15 16 12 O -0.54 -16.66 16.14 -3.30 -0.05 -16.71 16 13 C 0.48 17.64 7.85 87.23 0.69 18.33 16 14 O -0.54 -22.75 13.62 -3.39 -0.05 -22.80 16 15 N -0.58 -21.84 5.45 -305.33 -1.66 -23.51 16 16 C -0.06 -2.62 6.90 37.83 0.26 -2.36 16 17 C -0.05 -2.66 10.85 85.44 0.93 -1.73 16 18 N -0.31 -18.43 10.39 -56.44 -0.59 -19.02 16 19 N -0.16 -9.06 3.73 -189.97 -0.71 -9.77 16 20 C -0.35 -18.54 10.25 84.02 0.86 -17.68 16 21 H 0.14 6.47 7.83 -2.91 -0.02 6.44 16 22 C -0.01 -0.33 5.50 84.96 0.47 0.13 16 23 N -0.82 -47.02 11.81 21.66 0.26 -46.77 16 24 Si 1.02 38.32 29.55 68.60 2.03 40.35 16 25 H -0.24 -8.10 7.11 99.48 0.71 -7.40 16 26 H -0.27 -10.04 7.11 99.48 0.71 -9.34 16 27 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 28 C -0.07 -3.49 11.50 83.41 0.96 -2.53 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.06 0.58 6.57 -2.39 -0.02 0.56 16 36 H 0.05 0.91 7.75 -2.38 -0.02 0.89 16 37 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.10 0.97 6.57 -2.39 -0.02 0.96 16 39 H 0.07 1.14 7.73 -2.38 -0.02 1.12 16 40 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.40 3.01 9.12 -74.06 -0.68 2.33 16 43 H 0.42 9.96 8.07 -92.71 -0.75 9.21 16 44 H 0.42 13.29 8.29 -92.70 -0.77 12.52 16 45 H 0.17 9.24 5.92 -2.91 -0.02 9.22 16 46 H 0.28 14.54 8.31 -92.71 -0.77 13.77 16 47 H 0.19 7.00 8.06 -2.91 -0.02 6.98 16 Total: -1.00 -74.20 394.13 1.15 -73.05 By element: Atomic # 1 Polarization: 47.52 SS G_CDS: -1.17 Total: 46.35 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 6.99 Total: 7.54 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -4.69 Total: -116.84 kcal Atomic # 8 Polarization: -48.44 SS G_CDS: -2.01 Total: -50.45 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 2.03 Total: 40.35 kcal Total: -74.20 1.15 -73.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862029849.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.800 kcal (2) G-P(sol) polarization free energy of solvation -74.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds