Wall clock time and date at job start Tue Mar 31 2020 21:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46927 * 2 1 4 4 O 1.42901 * 109.47468 * 61.57940 * 3 2 1 5 5 C 1.52993 * 109.47051 * 181.58276 * 3 2 1 6 6 C 1.53005 * 109.47235 * 304.99646 * 5 3 2 7 7 C 1.53007 * 109.47000 * 301.57799 * 3 2 1 8 8 N 1.46496 * 109.47047 * 185.11629 * 7 3 2 9 9 C 1.46495 * 120.00588 * 275.72306 * 8 7 3 10 10 C 1.34782 * 120.00004 * 95.72145 * 8 7 3 11 11 O 1.21372 * 119.99813 * 354.91709 * 10 8 7 12 12 C 1.49300 * 120.00379 * 174.91991 * 10 8 7 13 13 O 1.21402 * 120.00041 * 5.13271 * 12 10 8 14 14 N 1.34778 * 120.00237 * 185.13894 * 12 10 8 15 15 C 1.40292 * 120.00061 * 179.97438 * 14 12 10 16 16 C 1.40720 * 126.10241 * 359.95674 * 15 14 12 17 17 N 1.30877 * 108.37522 * 179.79440 * 16 15 14 18 18 N 1.40063 * 108.43837 * 0.37409 * 17 16 15 19 19 C 1.37288 * 126.05597 * 179.87561 * 18 17 16 20 20 H 1.08003 * 120.00225 * 174.60552 * 19 18 17 21 21 C 1.39005 * 120.00096 * 354.88949 * 19 18 17 22 22 N 1.31280 * 119.99980 * 4.79549 * 21 19 18 23 23 Si 1.86803 * 120.00316 * 184.80080 * 21 19 18 24 24 H 1.48504 * 109.46948 * 94.99289 * 23 21 19 25 25 H 1.48493 * 109.47396 * 214.99707 * 23 21 19 26 26 H 1.48507 * 109.46642 * 334.99798 * 23 21 19 27 27 C 1.35788 * 126.09855 * 179.97438 * 15 14 12 28 28 H 1.08999 * 109.47235 * 185.21507 * 1 2 3 29 29 H 1.09001 * 109.47264 * 305.21427 * 1 2 3 30 30 H 1.09005 * 109.47201 * 65.21551 * 1 2 3 31 31 H 1.09003 * 109.47219 * 240.00041 * 2 1 3 32 32 H 1.08994 * 109.47172 * 120.00025 * 2 1 3 33 33 H 0.96695 * 114.00346 * 180.02562 * 4 3 2 34 34 H 1.08998 * 109.47476 * 64.99529 * 5 3 2 35 35 H 1.09001 * 109.47269 * 184.99948 * 5 3 2 36 36 H 1.08998 * 109.47222 * 179.97438 * 6 5 3 37 37 H 1.08999 * 109.47064 * 300.00777 * 6 5 3 38 38 H 1.09001 * 109.46745 * 59.99981 * 6 5 3 39 39 H 1.09007 * 109.46744 * 65.12074 * 7 3 2 40 40 H 1.08996 * 109.47175 * 305.11825 * 7 3 2 41 41 H 1.09004 * 109.47474 * 244.54415 * 9 8 7 42 42 H 1.09007 * 109.46935 * 4.54017 * 9 8 7 43 43 H 1.08999 * 109.47326 * 124.54186 * 9 8 7 44 44 H 0.97002 * 119.99934 * 359.97438 * 14 12 10 45 45 H 1.07994 * 125.81070 * 359.97438 * 16 15 14 46 46 H 0.96997 * 120.00210 * 179.97438 * 22 21 19 47 47 H 1.08007 * 126.25179 * 0.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5942 2.1054 1.1849 5 6 3.5694 1.4427 -0.0398 6 6 4.1099 0.6046 1.1205 7 6 1.4977 2.1751 -1.2290 8 7 2.0823 3.5168 -1.2950 9 6 1.4841 4.6149 -0.5320 10 6 3.1706 3.7409 -2.0579 11 8 3.7212 2.8147 -2.6166 12 6 3.6989 5.1283 -2.2157 13 8 3.2065 6.0408 -1.5842 14 7 4.7224 5.3679 -3.0592 15 6 5.2185 6.6717 -3.2079 16 6 4.7462 7.8192 -2.5442 17 7 5.4582 8.8450 -2.9364 18 7 6.4035 8.3978 -3.8681 19 6 7.3340 9.1754 -4.5119 20 1 8.0753 8.7150 -5.1483 21 6 7.3259 10.5547 -4.3398 22 7 6.4904 11.1053 -3.4901 23 14 8.5039 11.6250 -5.3179 24 1 7.8198 12.1287 -6.5360 25 1 8.9382 12.7738 -4.4832 26 1 9.6900 10.8231 -5.7121 27 6 6.2398 7.0516 -4.0181 28 1 -0.3633 -1.0234 0.0934 29 1 -0.3634 0.5926 0.8396 30 1 -0.3634 0.4308 -0.9330 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.8809 3.0265 1.2518 34 1 3.9083 1.0170 -0.9843 35 1 3.9350 2.4657 0.0496 36 1 5.1995 0.6044 1.0919 37 1 3.7709 1.0303 2.0650 38 1 3.7443 -0.4183 1.0310 39 1 0.4130 2.2546 -1.1553 40 1 1.7611 1.6193 -2.1288 41 1 1.0960 5.3663 -1.2198 42 1 0.6700 4.2295 0.0820 43 1 2.2409 5.0662 0.1096 44 1 5.1161 4.6388 -3.5636 45 1 3.9363 7.8480 -1.8304 46 1 6.4849 12.0678 -3.3697 47 1 6.8164 6.4062 -4.6642 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000862159265.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:00 Heat of formation + Delta-G solvation = -31.684173 kcal Electronic energy + Delta-G solvation = -30057.579268 eV Core-core repulsion = 25857.014216 eV Total energy + Delta-G solvation = -4200.565052 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.95354 -39.82771 -38.89489 -37.74523 -35.62646 -34.15205 -33.85827 -33.17811 -32.02679 -30.35828 -29.11225 -28.08642 -26.76323 -25.52545 -24.82607 -23.16235 -22.99571 -21.07536 -20.23871 -19.76009 -19.45512 -17.74878 -17.34101 -16.95941 -16.86353 -15.93595 -15.59803 -15.46145 -15.16618 -14.97799 -14.62103 -14.26307 -14.03709 -13.89241 -13.81353 -13.57612 -13.25158 -13.09540 -13.02571 -12.96798 -12.46422 -12.31841 -12.09383 -12.02645 -11.76411 -11.63767 -11.51294 -11.32722 -11.26488 -11.16381 -11.05855 -10.86187 -10.68578 -10.56775 -10.32143 -10.19243 -9.26314 -9.02845 -8.89481 -8.79111 -8.15815 -6.80772 -6.63459 -4.30566 1.59480 2.43820 2.90812 3.01993 3.07249 3.26471 3.62511 3.67266 3.82549 3.94759 4.33530 4.45418 4.50310 4.54945 4.60516 4.91601 4.94867 4.98189 5.03667 5.08446 5.21593 5.24383 5.32324 5.42103 5.52688 5.60312 5.64039 5.72005 5.83381 5.88645 5.95298 5.98184 6.07582 6.16185 6.17481 6.25011 6.32900 6.72354 6.85278 6.86328 7.02372 7.13659 7.39971 7.64788 7.79555 8.05872 8.15347 8.45403 8.66448 9.28448 9.56884 10.32512 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.031415 B = 0.002195 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.082710 B =12753.750193 C =13000.554016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C 0.121 3.879 4 O -0.556 6.556 5 C -0.146 4.146 6 C -0.149 4.149 7 C 0.085 3.915 8 N -0.595 5.595 9 C 0.079 3.921 10 C 0.513 3.487 11 O -0.524 6.524 12 C 0.482 3.518 13 O -0.518 6.518 14 N -0.583 5.583 15 C -0.069 4.069 16 C -0.026 4.026 17 N -0.261 5.261 18 N -0.138 5.138 19 C -0.322 4.322 20 H 0.118 0.882 21 C 0.047 3.953 22 N -0.767 5.767 23 Si 0.936 3.064 24 H -0.270 1.270 25 H -0.275 1.275 26 H -0.263 1.263 27 C -0.077 4.077 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.374 0.626 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.408 0.592 45 H 0.178 0.822 46 H 0.276 0.724 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.880 -17.868 5.376 20.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C 0.080 3.920 4 O -0.363 6.363 5 C -0.184 4.184 6 C -0.206 4.206 7 C -0.037 4.037 8 N -0.329 5.329 9 C -0.063 4.063 10 C 0.296 3.704 11 O -0.400 6.400 12 C 0.263 3.737 13 O -0.396 6.396 14 N -0.226 5.226 15 C -0.175 4.175 16 C -0.202 4.202 17 N -0.092 5.092 18 N 0.095 4.905 19 C -0.454 4.454 20 H 0.136 0.864 21 C -0.171 4.171 22 N -0.393 5.393 23 Si 0.760 3.240 24 H -0.196 1.196 25 H -0.200 1.200 26 H -0.187 1.187 27 C -0.229 4.229 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.222 0.778 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.108 0.892 40 H 0.114 0.886 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.243 0.757 45 H 0.194 0.806 46 H 0.087 0.913 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.088 -16.792 5.849 19.969 hybrid contribution 0.869 -0.220 -0.951 1.307 sum -8.219 -17.012 4.898 19.518 Atomic orbital electron populations 1.21785 0.95291 1.01682 1.02255 1.21534 0.96593 0.93494 1.03042 1.21653 0.93219 0.92788 0.84377 1.86497 1.78178 1.29474 1.42161 1.22181 0.94806 1.01148 1.00273 1.21763 1.00430 0.99824 0.98557 1.22441 0.98449 0.82810 1.00029 1.47669 1.28580 1.10578 1.46031 1.22147 0.98804 0.88740 0.96617 1.20370 0.80927 0.89749 0.79323 1.90717 1.57331 1.44883 1.47086 1.19595 0.82567 0.88629 0.82884 1.90649 1.58288 1.44797 1.45827 1.42155 1.31266 1.08901 1.40283 1.17244 1.05044 0.83957 1.11239 1.24134 1.03140 0.88943 1.03973 1.78258 1.03668 1.19997 1.07263 1.44561 1.19783 1.03064 1.23089 1.19932 1.09907 0.88849 1.26750 0.86431 1.25669 0.97593 0.97523 0.96328 1.70207 1.30293 1.12193 1.26644 0.85788 0.79684 0.79330 0.79244 1.19570 1.20040 1.18706 1.21312 1.04985 0.87350 1.09236 0.92847 0.91644 0.92831 0.90593 0.90539 0.77758 0.90106 0.92086 0.92968 0.92370 0.92579 0.89198 0.88627 0.90564 0.91027 0.90217 0.75697 0.80560 0.91350 0.83394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.29 37.16 0.35 -0.73 16 2 C -0.11 -0.85 4.67 -26.73 -0.12 -0.98 16 3 C 0.12 1.11 0.58 -90.62 -0.05 1.05 16 4 O -0.56 -5.27 11.53 -35.23 -0.41 -5.67 16 5 C -0.15 -1.54 3.90 -26.73 -0.10 -1.65 16 6 C -0.15 -1.40 9.32 37.16 0.35 -1.05 16 7 C 0.09 0.81 4.16 -4.04 -0.02 0.79 16 8 N -0.59 -6.76 2.37 -182.14 -0.43 -7.19 16 9 C 0.08 0.81 7.50 59.84 0.45 1.25 16 10 C 0.51 7.39 6.43 -11.65 -0.07 7.32 16 11 O -0.52 -8.05 14.44 5.48 0.08 -7.97 16 12 C 0.48 8.34 7.77 -11.66 -0.09 8.25 16 13 O -0.52 -9.72 10.40 5.45 0.06 -9.66 16 14 N -0.58 -10.71 5.45 -10.46 -0.06 -10.76 16 15 C -0.07 -1.56 6.90 -83.92 -0.58 -2.14 16 16 C -0.03 -0.66 10.85 -17.02 -0.18 -0.85 16 17 N -0.26 -7.38 10.41 30.81 0.32 -7.06 16 18 N -0.14 -3.71 3.73 -11.40 -0.04 -3.76 16 19 C -0.32 -8.35 10.24 -14.82 -0.15 -8.50 16 20 H 0.12 2.72 7.84 -52.48 -0.41 2.31 16 21 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 22 N -0.77 -20.95 11.83 55.50 0.66 -20.30 16 23 Si 0.94 18.55 29.55 -169.99 -5.02 13.52 16 24 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 25 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 26 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 27 C -0.08 -1.79 11.50 -16.38 -0.19 -1.98 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.52 7.58 -51.93 -0.39 0.13 16 30 H 0.05 0.35 6.82 -51.93 -0.35 -0.01 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.61 6.44 -51.93 -0.33 0.28 16 33 H 0.37 3.15 6.71 45.56 0.31 3.46 16 34 H 0.08 0.94 7.30 -51.93 -0.38 0.56 16 35 H 0.06 0.75 6.92 -51.93 -0.36 0.39 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.56 7.82 -51.93 -0.41 0.16 16 38 H 0.06 0.47 6.38 -51.93 -0.33 0.13 16 39 H 0.09 0.72 6.75 -51.92 -0.35 0.37 16 40 H 0.10 0.97 7.33 -51.93 -0.38 0.59 16 41 H 0.08 0.89 7.36 -51.93 -0.38 0.51 16 42 H 0.07 0.54 7.13 -51.93 -0.37 0.17 16 43 H 0.08 0.89 7.12 -51.93 -0.37 0.52 16 44 H 0.41 6.50 8.30 -40.82 -0.34 6.17 16 45 H 0.18 4.29 5.92 -52.49 -0.31 3.98 16 46 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 47 H 0.15 2.88 8.06 -52.48 -0.42 2.46 16 LS Contribution 374.14 15.07 5.64 5.64 Total: -1.00 -31.29 374.14 -5.73 -37.02 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -5.99 Total: 14.30 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -0.52 Total: 1.88 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: 0.45 Total: -49.06 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.27 Total: -23.30 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.02 Total: 13.52 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.29 -5.73 -37.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862159265.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.336 kcal (2) G-P(sol) polarization free energy of solvation -31.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds