Wall clock time and date at job start Tue Mar 31 2020 21:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46927 * 2 1 4 4 O 1.42901 * 109.47468 * 61.57940 * 3 2 1 5 5 C 1.52993 * 109.47051 * 181.58276 * 3 2 1 6 6 C 1.53005 * 109.47235 * 304.99646 * 5 3 2 7 7 C 1.53007 * 109.47000 * 301.57799 * 3 2 1 8 8 N 1.46496 * 109.47047 * 185.11629 * 7 3 2 9 9 C 1.46495 * 120.00588 * 275.72306 * 8 7 3 10 10 C 1.34782 * 120.00004 * 95.72145 * 8 7 3 11 11 O 1.21372 * 119.99813 * 354.91709 * 10 8 7 12 12 C 1.49300 * 120.00379 * 174.91991 * 10 8 7 13 13 O 1.21402 * 120.00041 * 5.13271 * 12 10 8 14 14 N 1.34778 * 120.00237 * 185.13894 * 12 10 8 15 15 C 1.40292 * 120.00061 * 179.97438 * 14 12 10 16 16 C 1.40720 * 126.10241 * 359.95674 * 15 14 12 17 17 N 1.30877 * 108.37522 * 179.79440 * 16 15 14 18 18 N 1.40063 * 108.43837 * 0.37409 * 17 16 15 19 19 C 1.37288 * 126.05597 * 179.87561 * 18 17 16 20 20 H 1.08003 * 120.00225 * 174.60552 * 19 18 17 21 21 C 1.39005 * 120.00096 * 354.88949 * 19 18 17 22 22 N 1.31280 * 119.99980 * 4.79549 * 21 19 18 23 23 Si 1.86803 * 120.00316 * 184.80080 * 21 19 18 24 24 H 1.48504 * 109.46948 * 94.99289 * 23 21 19 25 25 H 1.48493 * 109.47396 * 214.99707 * 23 21 19 26 26 H 1.48507 * 109.46642 * 334.99798 * 23 21 19 27 27 C 1.35788 * 126.09855 * 179.97438 * 15 14 12 28 28 H 1.08999 * 109.47235 * 185.21507 * 1 2 3 29 29 H 1.09001 * 109.47264 * 305.21427 * 1 2 3 30 30 H 1.09005 * 109.47201 * 65.21551 * 1 2 3 31 31 H 1.09003 * 109.47219 * 240.00041 * 2 1 3 32 32 H 1.08994 * 109.47172 * 120.00025 * 2 1 3 33 33 H 0.96695 * 114.00346 * 180.02562 * 4 3 2 34 34 H 1.08998 * 109.47476 * 64.99529 * 5 3 2 35 35 H 1.09001 * 109.47269 * 184.99948 * 5 3 2 36 36 H 1.08998 * 109.47222 * 179.97438 * 6 5 3 37 37 H 1.08999 * 109.47064 * 300.00777 * 6 5 3 38 38 H 1.09001 * 109.46745 * 59.99981 * 6 5 3 39 39 H 1.09007 * 109.46744 * 65.12074 * 7 3 2 40 40 H 1.08996 * 109.47175 * 305.11825 * 7 3 2 41 41 H 1.09004 * 109.47474 * 244.54415 * 9 8 7 42 42 H 1.09007 * 109.46935 * 4.54017 * 9 8 7 43 43 H 1.08999 * 109.47326 * 124.54186 * 9 8 7 44 44 H 0.97002 * 119.99934 * 359.97438 * 14 12 10 45 45 H 1.07994 * 125.81070 * 359.97438 * 16 15 14 46 46 H 0.96997 * 120.00210 * 179.97438 * 22 21 19 47 47 H 1.08007 * 126.25179 * 0.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5942 2.1054 1.1849 5 6 3.5694 1.4427 -0.0398 6 6 4.1099 0.6046 1.1205 7 6 1.4977 2.1751 -1.2290 8 7 2.0823 3.5168 -1.2950 9 6 1.4841 4.6149 -0.5320 10 6 3.1706 3.7409 -2.0579 11 8 3.7212 2.8147 -2.6166 12 6 3.6989 5.1283 -2.2157 13 8 3.2065 6.0408 -1.5842 14 7 4.7224 5.3679 -3.0592 15 6 5.2185 6.6717 -3.2079 16 6 4.7462 7.8192 -2.5442 17 7 5.4582 8.8450 -2.9364 18 7 6.4035 8.3978 -3.8681 19 6 7.3340 9.1754 -4.5119 20 1 8.0753 8.7150 -5.1483 21 6 7.3259 10.5547 -4.3398 22 7 6.4904 11.1053 -3.4901 23 14 8.5039 11.6250 -5.3179 24 1 7.8198 12.1287 -6.5360 25 1 8.9382 12.7738 -4.4832 26 1 9.6900 10.8231 -5.7121 27 6 6.2398 7.0516 -4.0181 28 1 -0.3633 -1.0234 0.0934 29 1 -0.3634 0.5926 0.8396 30 1 -0.3634 0.4308 -0.9330 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.8809 3.0265 1.2518 34 1 3.9083 1.0170 -0.9843 35 1 3.9350 2.4657 0.0496 36 1 5.1995 0.6044 1.0919 37 1 3.7709 1.0303 2.0650 38 1 3.7443 -0.4183 1.0310 39 1 0.4130 2.2546 -1.1553 40 1 1.7611 1.6193 -2.1288 41 1 1.0960 5.3663 -1.2198 42 1 0.6700 4.2295 0.0820 43 1 2.2409 5.0662 0.1096 44 1 5.1161 4.6388 -3.5636 45 1 3.9363 7.8480 -1.8304 46 1 6.4849 12.0678 -3.3697 47 1 6.8164 6.4062 -4.6642 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000862159265.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:00 Heat of formation + Delta-G solvation = -53.944613 kcal Electronic energy + Delta-G solvation = -30058.544553 eV Core-core repulsion = 25857.014216 eV Total energy + Delta-G solvation = -4201.530338 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.20921 -41.44036 -40.10832 -38.98235 -36.78451 -35.71433 -34.90586 -34.57811 -32.73282 -32.29568 -30.10917 -29.68092 -27.89641 -26.97819 -26.00005 -24.28154 -23.84387 -22.89293 -21.47148 -21.11101 -20.76313 -19.40426 -18.67803 -18.04243 -17.81444 -17.45033 -16.96425 -16.78115 -16.56768 -16.02277 -15.75325 -15.57278 -15.37993 -15.11509 -14.86736 -14.64395 -14.60011 -14.40964 -14.03321 -14.00164 -13.52837 -13.46554 -13.21120 -13.12096 -12.94771 -12.83648 -12.82141 -12.67321 -12.41173 -12.27540 -12.07387 -11.96954 -11.90767 -11.77782 -11.42026 -11.07532 -10.98164 -10.86342 -10.36811 -10.13996 -9.74914 -8.61140 -8.49714 -6.26809 0.28952 1.24969 1.28775 1.41240 1.58385 1.71460 2.02979 2.10308 2.44358 2.53456 2.84454 3.06422 3.22890 3.45265 3.71751 3.78303 3.85553 4.22340 4.26796 4.34397 4.39251 4.52665 4.53546 4.55188 4.60234 4.65119 4.72074 4.86532 4.92890 4.95902 4.97901 4.99032 5.07975 5.17824 5.19354 5.23374 5.26447 5.31049 5.36554 5.39917 5.52692 5.86370 5.92598 6.20708 6.40175 6.66239 6.69077 6.74924 7.08262 7.41153 7.63174 8.49681 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.031415 B = 0.002195 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.082710 B =12753.750193 C =13000.554016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C 0.126 3.874 4 O -0.560 6.560 5 C -0.144 4.144 6 C -0.145 4.145 7 C 0.085 3.915 8 N -0.581 5.581 9 C 0.079 3.921 10 C 0.519 3.481 11 O -0.533 6.533 12 C 0.483 3.517 13 O -0.532 6.532 14 N -0.585 5.585 15 C -0.054 4.054 16 C -0.046 4.046 17 N -0.308 5.308 18 N -0.164 5.164 19 C -0.353 4.353 20 H 0.140 0.860 21 C -0.005 4.005 22 N -0.820 5.820 23 Si 1.019 2.981 24 H -0.266 1.266 25 H -0.275 1.275 26 H -0.244 1.244 27 C -0.076 4.076 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.378 0.622 34 H 0.070 0.930 35 H 0.039 0.961 36 H 0.048 0.952 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.112 0.888 40 H 0.094 0.906 41 H 0.063 0.937 42 H 0.106 0.894 43 H 0.069 0.931 44 H 0.421 0.579 45 H 0.178 0.822 46 H 0.278 0.722 47 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.151 -19.894 4.834 22.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.146 4.146 3 C 0.085 3.915 4 O -0.367 6.367 5 C -0.182 4.182 6 C -0.202 4.202 7 C -0.037 4.037 8 N -0.313 5.313 9 C -0.063 4.063 10 C 0.301 3.699 11 O -0.410 6.410 12 C 0.265 3.735 13 O -0.409 6.409 14 N -0.230 5.230 15 C -0.160 4.160 16 C -0.222 4.222 17 N -0.140 5.140 18 N 0.068 4.932 19 C -0.485 4.485 20 H 0.158 0.842 21 C -0.217 4.217 22 N -0.448 5.448 23 Si 0.838 3.162 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.167 1.167 27 C -0.227 4.227 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.227 0.773 34 H 0.088 0.912 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.130 0.870 40 H 0.112 0.888 41 H 0.081 0.919 42 H 0.124 0.876 43 H 0.088 0.912 44 H 0.258 0.742 45 H 0.195 0.805 46 H 0.088 0.912 47 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -9.387 -18.872 5.324 21.739 hybrid contribution 0.817 0.231 -0.676 1.085 sum -8.570 -18.641 4.648 21.036 Atomic orbital electron populations 1.21761 0.94471 1.02288 1.02216 1.21560 0.97273 0.92312 1.03457 1.21633 0.92173 0.93648 0.84069 1.86506 1.78076 1.29867 1.42243 1.22140 0.96002 0.99930 1.00135 1.21734 1.00250 1.00360 0.97874 1.22655 0.99522 0.81349 1.00174 1.47710 1.27239 1.11822 1.44569 1.22191 0.99389 0.88354 0.96317 1.19754 0.81899 0.87967 0.80285 1.90723 1.57932 1.44402 1.47962 1.20262 0.81663 0.89946 0.81651 1.90647 1.58418 1.45915 1.45944 1.42106 1.31982 1.07635 1.41306 1.17275 1.04076 0.85082 1.09601 1.24261 1.03458 0.89773 1.04697 1.78150 1.05129 1.21893 1.08829 1.44827 1.20323 1.04369 1.23699 1.20632 1.10644 0.89732 1.27442 0.84236 1.26869 0.99152 0.98727 0.96937 1.70371 1.32844 1.12594 1.29001 0.84580 0.77506 0.76951 0.77206 1.19129 1.20052 1.16699 1.21998 1.04944 0.86710 1.09076 0.91857 0.92516 0.92128 0.89770 0.90583 0.77339 0.91181 0.94170 0.93281 0.92654 0.91243 0.86968 0.88817 0.91869 0.87600 0.91220 0.74162 0.80536 0.91240 0.79725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.29 71.98 0.67 -1.02 16 2 C -0.11 -1.42 4.67 30.59 0.14 -1.28 16 3 C 0.13 2.04 0.58 -10.79 -0.01 2.03 16 4 O -0.56 -9.37 11.53 -148.98 -1.72 -11.09 16 5 C -0.14 -2.87 3.90 30.59 0.12 -2.75 16 6 C -0.15 -2.54 9.32 71.98 0.67 -1.87 16 7 C 0.08 1.39 4.16 86.38 0.36 1.75 16 8 N -0.58 -12.26 2.37 -848.50 -2.01 -14.27 16 9 C 0.08 1.50 7.50 127.77 0.96 2.46 16 10 C 0.52 14.40 6.43 87.22 0.56 14.96 16 11 O -0.53 -15.67 14.44 -3.32 -0.05 -15.72 16 12 C 0.48 16.52 7.77 87.22 0.68 17.20 16 13 O -0.53 -20.08 10.40 -3.41 -0.04 -20.11 16 14 N -0.59 -21.16 5.45 -305.34 -1.66 -22.82 16 15 C -0.05 -2.45 6.90 37.82 0.26 -2.19 16 16 C -0.05 -2.42 10.85 85.44 0.93 -1.49 16 17 N -0.31 -18.09 10.41 -56.44 -0.59 -18.68 16 18 N -0.16 -8.98 3.73 -189.98 -0.71 -9.68 16 19 C -0.35 -18.46 10.24 84.02 0.86 -17.60 16 20 H 0.14 6.35 7.84 -2.91 -0.02 6.33 16 21 C 0.00 -0.24 5.50 84.96 0.47 0.23 16 22 N -0.82 -46.42 11.83 21.66 0.26 -46.16 16 23 Si 1.02 38.00 29.55 68.60 2.03 40.03 16 24 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 25 H -0.28 -10.14 7.11 99.48 0.71 -9.44 16 26 H -0.24 -8.24 7.11 99.48 0.71 -7.54 16 27 C -0.08 -3.52 11.50 83.41 0.96 -2.57 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.75 7.58 -2.39 -0.02 0.73 16 30 H 0.06 0.59 6.82 -2.38 -0.02 0.58 16 31 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 1.03 6.44 -2.39 -0.02 1.01 16 33 H 0.38 5.64 6.71 -74.06 -0.50 5.14 16 34 H 0.07 1.55 7.30 -2.39 -0.02 1.53 16 35 H 0.04 0.96 6.92 -2.39 -0.02 0.94 16 36 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.05 1.00 7.82 -2.39 -0.02 0.98 16 38 H 0.07 1.02 6.38 -2.39 -0.02 1.01 16 39 H 0.11 1.42 6.75 -2.38 -0.02 1.40 16 40 H 0.09 1.66 7.33 -2.39 -0.02 1.65 16 41 H 0.06 1.41 7.36 -2.38 -0.02 1.40 16 42 H 0.11 1.30 7.13 -2.38 -0.02 1.28 16 43 H 0.07 1.50 7.12 -2.39 -0.02 1.49 16 44 H 0.42 12.93 8.30 -92.71 -0.77 12.16 16 45 H 0.18 8.94 5.92 -2.91 -0.02 8.92 16 46 H 0.28 14.40 8.31 -92.71 -0.77 13.63 16 47 H 0.19 6.85 8.06 -2.91 -0.02 6.83 16 Total: -1.00 -70.04 374.14 2.90 -67.14 By element: Atomic # 1 Polarization: 43.72 SS G_CDS: -0.24 Total: 43.48 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 7.63 Total: 7.88 kcal Atomic # 7 Polarization: -106.90 SS G_CDS: -4.71 Total: -111.62 kcal Atomic # 8 Polarization: -45.12 SS G_CDS: -1.80 Total: -46.92 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 2.03 Total: 40.03 kcal Total: -70.04 2.90 -67.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862159265.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.200 kcal (2) G-P(sol) polarization free energy of solvation -70.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds