Wall clock time and date at job start Tue Mar 31 2020 21:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47273 * 2 1 4 4 N 1.46498 * 109.47078 * 240.00157 * 2 1 3 5 5 C 1.35055 * 125.56721 * 59.69499 * 4 2 1 6 6 O 1.21304 * 127.28811 * 0.02562 * 5 4 2 7 7 C 1.49981 * 105.43558 * 179.97438 * 5 4 2 8 8 O 1.21294 * 127.29012 * 180.10741 * 7 5 4 9 9 N 1.35060 * 105.43138 * 0.32670 * 7 5 4 10 10 C 1.46504 * 125.57373 * 179.76080 * 9 7 5 11 11 N 1.46899 * 109.46940 * 270.04444 * 10 9 7 12 12 C 1.46952 * 111.00230 * 278.79333 * 11 10 9 13 13 C 1.53047 * 109.36406 * 176.81461 * 12 11 10 14 14 N 1.46951 * 109.36451 * 58.40330 * 13 12 11 15 15 C 1.46902 * 111.00005 * 176.81140 * 14 13 12 16 16 C 1.50694 * 109.47235 * 58.97988 * 15 14 13 17 17 H 1.08004 * 120.00309 * 5.00761 * 16 15 14 18 18 C 1.37878 * 120.00186 * 185.00965 * 16 15 14 19 19 N 1.31517 * 120.00237 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00250 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46961 * 89.99874 * 20 18 16 22 22 H 1.48500 * 109.47267 * 210.00091 * 20 18 16 23 23 H 1.48495 * 109.46832 * 330.00264 * 20 18 16 24 24 C 1.46957 * 110.88231 * 300.67804 * 14 13 12 25 25 C 1.46960 * 110.99596 * 154.99623 * 11 10 9 26 26 C 1.34281 * 125.56889 * 239.99544 * 4 2 1 27 27 O 1.21480 * 124.29477 * 359.94770 * 26 4 2 28 28 H 1.09002 * 109.46605 * 299.99766 * 1 2 3 29 29 H 1.08995 * 109.46664 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46788 * 60.00041 * 1 2 3 31 31 H 1.09001 * 109.47305 * 120.00367 * 2 1 3 32 32 H 1.09001 * 109.47131 * 59.99996 * 3 2 1 33 33 H 1.09001 * 109.47401 * 179.97438 * 3 2 1 34 34 H 1.08993 * 109.47430 * 300.00201 * 3 2 1 35 35 H 1.08995 * 109.46647 * 30.04454 * 10 9 7 36 36 H 1.09002 * 109.46929 * 150.04330 * 10 9 7 37 37 H 1.08998 * 109.49191 * 296.78341 * 12 11 10 38 38 H 1.08998 * 109.48459 * 56.84785 * 12 11 10 39 39 H 1.09001 * 109.49013 * 298.43639 * 13 12 11 40 40 H 1.09005 * 109.50896 * 178.38481 * 13 12 11 41 41 H 1.09003 * 109.47428 * 178.98271 * 15 14 13 42 42 H 1.09006 * 109.47249 * 298.97513 * 15 14 13 43 43 H 0.96993 * 120.00526 * 179.97438 * 19 18 16 44 44 H 1.08998 * 109.49020 * 299.35396 * 24 14 13 45 45 H 1.08998 * 109.48799 * 179.28849 * 24 14 13 46 46 H 1.09006 * 109.49153 * 303.15412 * 25 11 10 47 47 H 1.09001 * 109.48784 * 63.22126 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 1.7575 -0.3318 -2.4718 6 8 1.0872 0.6062 -2.8491 7 6 2.4730 -1.3378 -3.3236 8 8 2.5046 -1.3850 -4.5352 9 7 3.0707 -2.1830 -2.4561 10 6 3.8880 -3.3426 -2.8220 11 7 3.0292 -4.5282 -2.9434 12 6 2.7497 -5.1133 -1.6247 13 6 1.7906 -6.2949 -1.7867 14 7 2.3917 -7.2907 -2.6848 15 6 1.5329 -8.4764 -2.8062 16 6 0.1840 -8.0672 -3.3389 17 1 0.0100 -7.0449 -3.6408 18 6 -0.8283 -8.9978 -3.4407 19 7 -0.6167 -10.2426 -3.0726 20 14 -2.5007 -8.4905 -4.1004 21 1 -2.5261 -8.6682 -5.5745 22 1 -3.5539 -9.3351 -3.4817 23 1 -2.7516 -7.0648 -3.7693 24 6 2.6712 -6.7057 -4.0036 25 6 3.6303 -5.5241 -3.8415 26 6 2.7937 -1.7869 -1.2033 27 8 3.1927 -2.3496 -0.2034 28 1 -0.3632 0.5138 0.8900 29 1 -0.3632 -1.0276 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6768 1.9564 -0.8899 35 1 4.3820 -3.1526 -3.7749 36 1 4.6392 -3.5153 -2.0513 37 1 3.6806 -5.4595 -1.1757 38 1 2.2937 -4.3602 -0.9821 39 1 0.8496 -5.9440 -2.2105 40 1 1.6042 -6.7486 -0.8133 41 1 1.9927 -9.1895 -3.4905 42 1 1.4118 -8.9391 -1.8267 43 1 -1.3289 -10.8972 -3.1439 44 1 1.7403 -6.3595 -4.4526 45 1 3.1272 -7.4587 -4.6462 46 1 3.8163 -5.0705 -4.8152 47 1 4.5713 -5.8749 -3.4178 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872735707.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:30 Heat of formation + Delta-G solvation = -35.760586 kcal Electronic energy + Delta-G solvation = -30870.718881 eV Core-core repulsion = 26669.977062 eV Total energy + Delta-G solvation = -4200.741819 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.61949 -39.60146 -39.37887 -38.57139 -36.79091 -36.39713 -35.09629 -32.92833 -32.12488 -30.44429 -28.64555 -27.72881 -26.69290 -25.69128 -24.27999 -23.43099 -23.05689 -21.94954 -21.39635 -20.98144 -19.22495 -17.98983 -17.95316 -17.39066 -16.66930 -16.45466 -16.22693 -15.80092 -15.56941 -14.97001 -14.80160 -14.75425 -14.66926 -14.39974 -14.25967 -13.99738 -13.67441 -13.30868 -13.30137 -13.03501 -12.68752 -12.61432 -12.36029 -12.00348 -11.92385 -11.86979 -11.64436 -11.25487 -11.07071 -10.93797 -10.78519 -10.75379 -10.57984 -10.35613 -10.28216 -10.23134 -10.10084 -9.83723 -9.56057 -8.44500 -8.42565 -7.22485 -6.04107 -4.13035 0.06443 1.48649 1.78304 2.25886 2.33339 3.27308 3.34208 3.37984 3.59517 3.91772 4.11191 4.40290 4.46444 4.48552 4.56734 4.78129 4.92062 4.95490 5.01126 5.09833 5.12701 5.26410 5.28755 5.32509 5.41945 5.49465 5.50516 5.68890 5.72277 5.80202 5.80490 5.89184 6.05127 6.20350 6.32596 6.43920 6.52923 6.70677 6.76197 6.91865 6.99256 7.06006 7.25526 7.31934 7.50442 7.88233 8.00515 8.23258 8.27342 8.97296 9.54100 11.01085 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013327 B = 0.003210 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.570318 B = 8720.654915 C = 9364.845531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.144 3.856 3 C -0.168 4.168 4 N -0.571 5.571 5 C 0.510 3.490 6 O -0.414 6.414 7 C 0.512 3.488 8 O -0.405 6.405 9 N -0.564 5.564 10 C 0.287 3.713 11 N -0.554 5.554 12 C 0.059 3.941 13 C 0.066 3.934 14 N -0.543 5.543 15 C 0.188 3.812 16 C -0.549 4.549 17 H 0.058 0.942 18 C 0.065 3.935 19 N -0.891 5.891 20 Si 0.888 3.112 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.275 1.275 24 C 0.063 3.937 25 C 0.067 3.933 26 C 0.711 3.289 27 O -0.487 6.487 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.115 0.885 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.043 0.957 38 H 0.070 0.930 39 H 0.048 0.952 40 H 0.071 0.929 41 H 0.028 0.972 42 H 0.035 0.965 43 H 0.262 0.738 44 H 0.048 0.952 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.253 21.696 5.896 24.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.044 3.956 3 C -0.226 4.226 4 N -0.321 5.321 5 C 0.290 3.710 6 O -0.278 6.278 7 C 0.292 3.708 8 O -0.269 6.269 9 N -0.314 5.314 10 C 0.077 3.923 11 N -0.281 5.281 12 C -0.069 4.069 13 C -0.063 4.063 14 N -0.268 5.268 15 C 0.062 3.938 16 C -0.588 4.588 17 H 0.076 0.924 18 C -0.137 4.137 19 N -0.530 5.530 20 Si 0.716 3.284 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.066 4.066 25 C -0.061 4.061 26 C 0.414 3.586 27 O -0.356 6.356 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.133 0.867 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.129 0.871 36 H 0.101 0.899 37 H 0.061 0.939 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.046 0.954 42 H 0.053 0.947 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 9.057 21.662 5.593 24.136 hybrid contribution -1.209 0.065 -0.357 1.262 sum 7.848 21.727 5.236 23.687 Atomic orbital electron populations 1.22225 0.92919 1.03671 1.04057 1.21456 0.95641 0.93485 0.85044 1.22208 1.01919 0.94368 1.04108 1.46986 1.47931 1.28031 1.09181 1.20972 0.81155 0.85574 0.83259 1.90809 1.33117 1.26280 1.77632 1.20824 0.79527 0.82699 0.87794 1.90843 1.54536 1.70531 1.10942 1.46936 1.49411 1.28306 1.06715 1.22120 0.87576 0.80380 1.02270 1.61757 1.45670 1.06956 1.13691 1.22373 0.99560 0.96769 0.88163 1.21902 0.95612 0.90976 0.97774 1.62716 1.46855 1.07589 1.09601 1.19730 0.89419 0.86970 0.97659 1.21752 0.97618 0.95946 1.43505 0.92391 1.24954 0.98730 0.94873 0.95167 1.69939 1.33311 1.02290 1.47452 0.86653 0.84003 0.78550 0.79184 1.20595 1.21139 1.19974 1.21938 0.97913 0.94018 0.92724 1.22220 0.96803 0.91842 0.95237 1.15981 0.78454 0.80011 0.84171 1.91024 1.53585 1.57031 1.33932 0.89921 0.91435 0.90984 0.86705 0.89932 0.91794 0.91014 0.87115 0.89869 0.93858 0.91180 0.93376 0.91110 0.95407 0.94714 0.92806 0.93337 0.90907 0.90641 0.93807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 9.22 37.16 0.34 -0.88 16 2 C 0.14 1.07 3.46 -67.93 -0.23 0.83 16 3 C -0.17 -0.98 9.23 37.16 0.34 -0.64 16 4 N -0.57 -5.61 2.54 -114.07 -0.29 -5.90 16 5 C 0.51 5.73 7.65 -11.21 -0.09 5.64 16 6 O -0.41 -5.21 15.83 5.54 0.09 -5.13 16 7 C 0.51 6.28 8.31 -11.20 -0.09 6.18 16 8 O -0.41 -5.92 17.88 5.55 0.10 -5.82 16 9 N -0.56 -6.46 2.87 -124.52 -0.36 -6.82 16 10 C 0.29 3.18 5.70 -63.31 -0.36 2.82 16 11 N -0.55 -8.02 4.81 -238.38 -1.15 -9.16 16 12 C 0.06 0.93 5.44 -3.77 -0.02 0.91 16 13 C 0.07 1.30 5.24 -3.77 -0.02 1.28 16 14 N -0.54 -11.39 4.92 -235.92 -1.16 -12.55 16 15 C 0.19 4.77 5.14 -4.98 -0.03 4.74 16 16 C -0.55 -15.02 7.66 -34.44 -0.26 -15.28 16 17 H 0.06 1.60 5.82 -52.48 -0.31 1.29 16 18 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 19 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 20 Si 0.89 21.61 29.54 -169.99 -5.02 16.58 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 24 C 0.06 1.18 5.32 -3.77 -0.02 1.16 16 25 C 0.07 0.95 5.53 -3.77 -0.02 0.93 16 26 C 0.71 8.01 7.64 -87.81 -0.67 7.34 16 27 O -0.49 -6.29 15.71 5.38 0.08 -6.20 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.61 7.02 -51.93 -0.36 0.24 16 31 H 0.12 0.79 7.60 -51.93 -0.39 0.40 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.51 7.06 -51.93 -0.37 0.14 16 35 H 0.11 1.04 7.71 -51.93 -0.40 0.64 16 36 H 0.08 0.83 7.74 -51.93 -0.40 0.43 16 37 H 0.04 0.67 8.12 -51.93 -0.42 0.24 16 38 H 0.07 1.09 6.01 -51.93 -0.31 0.78 16 39 H 0.05 1.06 6.62 -51.93 -0.34 0.72 16 40 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.03 0.75 8.12 -51.93 -0.42 0.33 16 42 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.05 1.03 6.78 -51.93 -0.35 0.68 16 45 H 0.07 1.32 8.12 -51.93 -0.42 0.90 16 46 H 0.08 0.93 7.98 -51.93 -0.41 0.52 16 47 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 379.67 15.07 5.72 5.72 Total: -1.00 -31.60 379.67 -9.49 -41.09 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -7.01 Total: -3.17 kcal Atomic # 6 Polarization: 17.99 SS G_CDS: -1.23 Total: 16.76 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: -2.22 Total: -59.84 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: 0.27 Total: -17.14 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.60 -9.49 -41.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872735707.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.331 kcal (2) G-P(sol) polarization free energy of solvation -31.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds