Wall clock time and date at job start Tue Mar 31 2020 21:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47273 * 2 1 4 4 N 1.46498 * 109.47078 * 240.00157 * 2 1 3 5 5 C 1.35055 * 125.56721 * 59.69499 * 4 2 1 6 6 O 1.21304 * 127.28811 * 0.02562 * 5 4 2 7 7 C 1.49981 * 105.43558 * 179.97438 * 5 4 2 8 8 O 1.21294 * 127.29012 * 180.10741 * 7 5 4 9 9 N 1.35060 * 105.43138 * 0.32670 * 7 5 4 10 10 C 1.46504 * 125.57373 * 179.76080 * 9 7 5 11 11 N 1.46899 * 109.46940 * 270.04444 * 10 9 7 12 12 C 1.46952 * 111.00230 * 278.79333 * 11 10 9 13 13 C 1.53047 * 109.36406 * 176.81461 * 12 11 10 14 14 N 1.46951 * 109.36451 * 58.40330 * 13 12 11 15 15 C 1.46902 * 111.00005 * 176.81140 * 14 13 12 16 16 C 1.50694 * 109.47235 * 58.97988 * 15 14 13 17 17 H 1.08004 * 120.00309 * 5.00761 * 16 15 14 18 18 C 1.37878 * 120.00186 * 185.00965 * 16 15 14 19 19 N 1.31517 * 120.00237 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00250 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46961 * 89.99874 * 20 18 16 22 22 H 1.48500 * 109.47267 * 210.00091 * 20 18 16 23 23 H 1.48495 * 109.46832 * 330.00264 * 20 18 16 24 24 C 1.46957 * 110.88231 * 300.67804 * 14 13 12 25 25 C 1.46960 * 110.99596 * 154.99623 * 11 10 9 26 26 C 1.34281 * 125.56889 * 239.99544 * 4 2 1 27 27 O 1.21480 * 124.29477 * 359.94770 * 26 4 2 28 28 H 1.09002 * 109.46605 * 299.99766 * 1 2 3 29 29 H 1.08995 * 109.46664 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46788 * 60.00041 * 1 2 3 31 31 H 1.09001 * 109.47305 * 120.00367 * 2 1 3 32 32 H 1.09001 * 109.47131 * 59.99996 * 3 2 1 33 33 H 1.09001 * 109.47401 * 179.97438 * 3 2 1 34 34 H 1.08993 * 109.47430 * 300.00201 * 3 2 1 35 35 H 1.08995 * 109.46647 * 30.04454 * 10 9 7 36 36 H 1.09002 * 109.46929 * 150.04330 * 10 9 7 37 37 H 1.08998 * 109.49191 * 296.78341 * 12 11 10 38 38 H 1.08998 * 109.48459 * 56.84785 * 12 11 10 39 39 H 1.09001 * 109.49013 * 298.43639 * 13 12 11 40 40 H 1.09005 * 109.50896 * 178.38481 * 13 12 11 41 41 H 1.09003 * 109.47428 * 178.98271 * 15 14 13 42 42 H 1.09006 * 109.47249 * 298.97513 * 15 14 13 43 43 H 0.96993 * 120.00526 * 179.97438 * 19 18 16 44 44 H 1.08998 * 109.49020 * 299.35396 * 24 14 13 45 45 H 1.08998 * 109.48799 * 179.28849 * 24 14 13 46 46 H 1.09006 * 109.49153 * 303.15412 * 25 11 10 47 47 H 1.09001 * 109.48784 * 63.22126 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 1.7575 -0.3318 -2.4718 6 8 1.0872 0.6062 -2.8491 7 6 2.4730 -1.3378 -3.3236 8 8 2.5046 -1.3850 -4.5352 9 7 3.0707 -2.1830 -2.4561 10 6 3.8880 -3.3426 -2.8220 11 7 3.0292 -4.5282 -2.9434 12 6 2.7497 -5.1133 -1.6247 13 6 1.7906 -6.2949 -1.7867 14 7 2.3917 -7.2907 -2.6848 15 6 1.5329 -8.4764 -2.8062 16 6 0.1840 -8.0672 -3.3389 17 1 0.0100 -7.0449 -3.6408 18 6 -0.8283 -8.9978 -3.4407 19 7 -0.6167 -10.2426 -3.0726 20 14 -2.5007 -8.4905 -4.1004 21 1 -2.5261 -8.6682 -5.5745 22 1 -3.5539 -9.3351 -3.4817 23 1 -2.7516 -7.0648 -3.7693 24 6 2.6712 -6.7057 -4.0036 25 6 3.6303 -5.5241 -3.8415 26 6 2.7937 -1.7869 -1.2033 27 8 3.1927 -2.3496 -0.2034 28 1 -0.3632 0.5138 0.8900 29 1 -0.3632 -1.0276 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6768 1.9564 -0.8899 35 1 4.3820 -3.1526 -3.7749 36 1 4.6392 -3.5153 -2.0513 37 1 3.6806 -5.4595 -1.1757 38 1 2.2937 -4.3602 -0.9821 39 1 0.8496 -5.9440 -2.2105 40 1 1.6042 -6.7486 -0.8133 41 1 1.9927 -9.1895 -3.4905 42 1 1.4118 -8.9391 -1.8267 43 1 -1.3289 -10.8972 -3.1439 44 1 1.7403 -6.3595 -4.4526 45 1 3.1272 -7.4587 -4.6462 46 1 3.8163 -5.0705 -4.8152 47 1 4.5713 -5.8749 -3.4178 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872735707.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:29 Heat of formation + Delta-G solvation = -58.867253 kcal Electronic energy + Delta-G solvation = -30871.720861 eV Core-core repulsion = 26669.977062 eV Total energy + Delta-G solvation = -4201.743799 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.52685 -40.63008 -40.37484 -39.84591 -37.70330 -37.45283 -36.39522 -34.56024 -33.40936 -31.84261 -30.11458 -28.24213 -28.06143 -26.98395 -25.68780 -24.56673 -24.18946 -23.47239 -22.55343 -21.76444 -20.75879 -18.93676 -18.86411 -18.48479 -18.30747 -17.64737 -17.20354 -16.95019 -16.57859 -16.53047 -16.06954 -15.84344 -15.78604 -15.61132 -15.44169 -15.24873 -14.82188 -14.70598 -14.32755 -14.13703 -13.79896 -13.51176 -13.43592 -13.37716 -13.11810 -12.93338 -12.81609 -12.48491 -12.44130 -12.33522 -12.30232 -12.14674 -12.07953 -11.86926 -11.78160 -11.68783 -11.20168 -11.17346 -11.07331 -10.63110 -9.55995 -9.06406 -8.18445 -6.37310 -0.88561 0.64234 0.87773 1.33363 1.34195 1.36725 1.39233 1.44501 2.34378 2.65582 2.83502 3.06475 3.34129 3.38735 3.75073 3.90709 3.91413 3.91978 4.03162 4.12357 4.19349 4.21184 4.34644 4.44889 4.46426 4.54823 4.65713 4.69191 4.78349 4.81329 4.83105 4.98085 5.01536 5.08253 5.18949 5.20405 5.21890 5.23492 5.31003 5.41815 5.54738 5.69765 5.82925 5.87980 6.01666 6.04585 6.22619 6.40096 6.48577 6.83182 7.33937 8.84077 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013327 B = 0.003210 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.570318 B = 8720.654915 C = 9364.845531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.136 3.864 3 C -0.162 4.162 4 N -0.564 5.564 5 C 0.517 3.483 6 O -0.428 6.428 7 C 0.516 3.484 8 O -0.431 6.431 9 N -0.562 5.562 10 C 0.286 3.714 11 N -0.572 5.572 12 C 0.077 3.923 13 C 0.069 3.931 14 N -0.539 5.539 15 C 0.201 3.799 16 C -0.555 4.555 17 H 0.051 0.949 18 C 0.014 3.986 19 N -0.924 5.924 20 Si 0.953 3.047 21 H -0.273 1.273 22 H -0.278 1.278 23 H -0.273 1.273 24 C 0.062 3.938 25 C 0.079 3.921 26 C 0.715 3.285 27 O -0.499 6.499 28 H 0.108 0.892 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.125 0.875 32 H 0.106 0.894 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.134 0.866 36 H 0.104 0.896 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.017 0.983 40 H 0.061 0.939 41 H 0.007 0.993 42 H 0.007 0.993 43 H 0.266 0.734 44 H 0.018 0.982 45 H 0.073 0.927 46 H 0.102 0.898 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.020 23.700 6.290 26.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.037 3.963 3 C -0.219 4.219 4 N -0.313 5.313 5 C 0.297 3.703 6 O -0.294 6.294 7 C 0.296 3.704 8 O -0.296 6.296 9 N -0.312 5.312 10 C 0.077 3.923 11 N -0.300 5.300 12 C -0.051 4.051 13 C -0.059 4.059 14 N -0.263 5.263 15 C 0.074 3.926 16 C -0.594 4.594 17 H 0.070 0.930 18 C -0.185 4.185 19 N -0.564 5.564 20 Si 0.779 3.221 21 H -0.198 1.198 22 H -0.203 1.203 23 H -0.198 1.198 24 C -0.067 4.067 25 C -0.049 4.049 26 C 0.418 3.582 27 O -0.369 6.369 28 H 0.126 0.874 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.143 0.857 32 H 0.124 0.876 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.152 0.848 36 H 0.121 0.879 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.035 0.965 40 H 0.079 0.921 41 H 0.025 0.975 42 H 0.025 0.975 43 H 0.075 0.925 44 H 0.036 0.964 45 H 0.092 0.908 46 H 0.120 0.880 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.838 23.691 6.008 26.347 hybrid contribution -1.429 -0.550 -0.440 1.593 sum 8.408 23.142 5.568 25.244 Atomic orbital electron populations 1.22218 0.92724 1.02962 1.04630 1.21785 0.95830 0.94400 0.84256 1.22183 1.02073 0.93100 1.04593 1.47087 1.47257 1.27562 1.09378 1.20788 0.80803 0.85122 0.83558 1.90809 1.33788 1.26863 1.77893 1.20956 0.79111 0.82792 0.87522 1.90830 1.55517 1.71272 1.11973 1.46944 1.49280 1.28231 1.06699 1.22334 0.87029 0.78560 1.04380 1.61651 1.47540 1.07946 1.12821 1.22099 0.98780 0.94981 0.89208 1.21869 0.95528 0.91992 0.96558 1.62651 1.45297 1.07041 1.11288 1.19385 0.89489 0.88442 0.95263 1.21941 0.98621 0.95604 1.43221 0.93047 1.25755 1.02445 0.94860 0.95459 1.70046 1.34585 1.03276 1.48491 0.85630 0.79607 0.78139 0.78760 1.19827 1.20345 1.19817 1.22002 0.97773 0.95841 0.91079 1.22104 0.95752 0.90155 0.96857 1.15995 0.78279 0.80059 0.83855 1.91022 1.54143 1.57474 1.34251 0.87368 0.92736 0.92382 0.85720 0.87560 0.91486 0.92359 0.84791 0.87855 0.92739 0.90845 0.96482 0.92092 0.97474 0.97477 0.92533 0.96401 0.90834 0.87970 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 9.22 71.98 0.66 -1.49 16 2 C 0.14 1.76 3.46 44.99 0.16 1.92 16 3 C -0.16 -1.54 9.23 71.98 0.66 -0.88 16 4 N -0.56 -10.21 2.54 -751.62 -1.91 -12.12 16 5 C 0.52 11.06 7.65 87.39 0.67 11.73 16 6 O -0.43 -10.49 15.83 -3.10 -0.05 -10.54 16 7 C 0.52 11.95 8.31 87.39 0.73 12.68 16 8 O -0.43 -12.10 17.88 -3.07 -0.05 -12.15 16 9 N -0.56 -11.72 2.87 -784.66 -2.25 -13.97 16 10 C 0.29 5.47 5.70 170.81 0.97 6.45 16 11 N -0.57 -15.35 4.81 -908.08 -4.37 -19.72 16 12 C 0.08 2.31 5.44 86.31 0.47 2.78 16 13 C 0.07 2.75 5.24 86.31 0.45 3.21 16 14 N -0.54 -22.95 4.92 -900.30 -4.43 -27.38 16 15 C 0.20 10.61 5.14 85.55 0.44 11.05 16 16 C -0.55 -31.23 7.66 25.60 0.20 -31.03 16 17 H 0.05 2.92 5.82 -2.91 -0.02 2.90 16 18 C 0.01 0.82 5.46 84.65 0.46 1.28 16 19 N -0.92 -55.29 13.29 21.45 0.28 -55.00 16 20 Si 0.95 44.84 29.54 68.60 2.03 46.87 16 21 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 23 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 24 C 0.06 2.29 5.32 86.31 0.46 2.75 16 25 C 0.08 2.05 5.53 86.31 0.48 2.53 16 26 C 0.71 14.71 7.64 179.36 1.37 16.08 16 27 O -0.50 -11.76 15.71 -3.65 -0.06 -11.81 16 28 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 0.92 7.02 -2.39 -0.02 0.91 16 31 H 0.12 1.43 7.60 -2.39 -0.02 1.41 16 32 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.06 0.74 7.06 -2.39 -0.02 0.72 16 35 H 0.13 2.00 7.71 -2.39 -0.02 1.98 16 36 H 0.10 1.65 7.74 -2.39 -0.02 1.63 16 37 H 0.05 1.54 8.12 -2.39 -0.02 1.52 16 38 H 0.07 2.17 6.01 -2.39 -0.01 2.16 16 39 H 0.02 0.77 6.62 -2.39 -0.02 0.76 16 40 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 41 H 0.01 0.40 8.12 -2.39 -0.02 0.38 16 42 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 43 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 44 H 0.02 0.77 6.78 -2.39 -0.02 0.75 16 45 H 0.07 2.67 8.12 -2.39 -0.02 2.65 16 46 H 0.10 2.19 7.98 -2.38 -0.02 2.17 16 47 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -69.72 379.67 -1.64 -71.37 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: 0.99 Total: 5.40 kcal Atomic # 6 Polarization: 30.89 SS G_CDS: 8.18 Total: 39.07 kcal Atomic # 7 Polarization: -115.52 SS G_CDS: -12.67 Total: -128.19 kcal Atomic # 8 Polarization: -34.35 SS G_CDS: -0.16 Total: -34.51 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -69.72 -1.64 -71.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872735707.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.500 kcal (2) G-P(sol) polarization free energy of solvation -69.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds