Wall clock time and date at job start Tue Mar 31 2020 21:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47105 * 2 1 4 4 H 1.09002 * 109.49719 * 304.94022 * 3 2 1 5 5 C 1.53196 * 109.49623 * 65.00091 * 3 2 1 6 6 N 1.46924 * 108.77608 * 174.62152 * 5 3 2 7 7 C 1.34777 * 120.63377 * 126.36764 * 6 5 3 8 8 O 1.21280 * 119.99903 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.99783 * 179.97438 * 7 6 5 10 10 N 1.46502 * 109.46948 * 180.02562 * 9 7 6 11 11 C 1.47312 * 126.68837 * 269.98314 * 10 9 7 12 12 C 1.51588 * 103.59518 * 180.02562 * 11 10 9 13 13 O 1.21229 * 127.16201 * 180.02562 * 12 11 10 14 14 N 1.34766 * 105.68123 * 0.02562 * 12 11 10 15 15 C 1.33794 * 111.64801 * 359.97438 * 14 12 11 16 16 O 1.21533 * 123.77500 * 179.73376 * 15 14 12 17 17 C 1.46935 * 118.73528 * 306.64341 * 6 5 3 18 18 C 1.52758 * 109.00905 * 53.31026 * 17 6 5 19 19 C 1.53038 * 109.52677 * 184.85246 * 3 2 1 20 20 H 1.09002 * 109.45624 * 58.66231 * 19 3 2 21 21 N 1.46501 * 109.46077 * 298.69406 * 19 3 2 22 22 C 1.36930 * 120.00125 * 154.99910 * 21 19 3 23 23 H 1.08006 * 119.99843 * 359.97438 * 22 21 19 24 24 C 1.38809 * 120.00277 * 179.97438 * 22 21 19 25 25 N 1.31622 * 120.00601 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 119.99745 * 359.97438 * 24 22 21 27 27 H 1.48496 * 109.47259 * 89.99915 * 26 24 22 28 28 H 1.48501 * 109.47032 * 210.00011 * 26 24 22 29 29 H 1.48504 * 109.47045 * 329.99642 * 26 24 22 30 30 H 1.09003 * 109.47240 * 299.99628 * 1 2 3 31 31 H 1.09000 * 109.47363 * 60.00213 * 1 2 3 32 32 H 1.09003 * 109.46906 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46840 * 240.00013 * 2 1 3 34 34 H 1.09002 * 109.46950 * 120.00123 * 2 1 3 35 35 H 1.09001 * 109.58822 * 54.83137 * 5 3 2 36 36 H 1.09004 * 109.58781 * 294.40576 * 5 3 2 37 37 H 1.09002 * 109.47078 * 60.00487 * 9 7 6 38 38 H 1.09003 * 109.47557 * 299.99883 * 9 7 6 39 39 H 1.09006 * 110.60307 * 61.50966 * 11 10 9 40 40 H 1.08999 * 110.73516 * 298.62335 * 11 10 9 41 41 H 0.96997 * 124.18067 * 179.97438 * 14 12 11 42 42 H 1.09000 * 109.58482 * 173.14731 * 17 6 5 43 43 H 1.09004 * 109.58197 * 293.56938 * 17 6 5 44 44 H 1.08997 * 109.56133 * 185.55633 * 18 17 6 45 45 H 1.08994 * 109.36108 * 65.49936 * 18 17 6 46 46 H 0.97002 * 119.99738 * 334.98971 * 21 19 3 47 47 H 0.96994 * 120.00393 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9816 -0.8423 5 6 1.6350 2.1279 1.3088 6 7 2.2408 3.4659 1.3490 7 6 1.4803 4.5579 1.5626 8 8 0.2838 4.4416 1.7233 9 6 2.1167 5.9234 1.6016 10 7 1.0863 6.9355 1.8469 11 6 0.2998 7.6552 0.8303 12 6 -0.5962 8.5628 1.6496 13 8 -1.4219 9.3467 1.2332 14 7 -0.2839 8.3170 2.9373 15 6 0.6745 7.3896 3.0444 16 8 1.1264 7.0043 4.1048 17 6 3.6906 3.5913 1.1459 18 6 4.0733 2.8890 -0.1555 19 6 3.5655 1.4457 -0.1220 20 1 3.8573 0.9369 -1.0408 21 7 4.1486 0.7496 1.0277 22 6 5.3869 0.1744 0.9239 23 1 5.9336 0.2336 -0.0057 24 6 5.9396 -0.4847 2.0133 25 7 7.1301 -1.0371 1.9138 26 14 4.9943 -0.5864 3.6213 27 1 4.1521 -1.8094 3.6240 28 1 5.9513 -0.6419 4.7555 29 1 4.1280 0.6115 3.7629 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.9912 1.5399 2.1547 36 1 0.5496 2.2168 1.3542 37 1 2.6041 6.1244 0.6476 38 1 2.8562 5.9569 2.4017 39 1 -0.2964 6.9577 0.2418 40 1 0.9512 8.2422 0.1827 41 1 -0.7022 8.7580 3.6933 42 1 3.9610 4.6454 1.0839 43 1 4.2178 3.1251 1.9783 44 1 5.1577 2.8906 -0.2659 45 1 3.6207 3.4145 -0.9963 46 1 3.6574 0.6963 1.8625 47 1 7.5161 -1.4980 2.6750 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037940631.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:38 Heat of formation + Delta-G solvation = -56.562353 kcal Electronic energy + Delta-G solvation = -30721.680944 eV Core-core repulsion = 26520.037092 eV Total energy + Delta-G solvation = -4201.643851 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.56261 -40.31932 -38.96664 -38.08468 -36.44612 -34.82776 -34.66988 -33.92000 -31.85765 -30.22246 -29.93486 -28.71462 -27.28217 -25.08725 -24.02391 -23.22011 -22.69394 -21.92294 -20.95848 -19.80799 -18.58136 -18.42031 -18.03667 -17.64417 -16.98800 -16.76349 -16.17394 -16.07084 -15.37867 -15.13896 -14.80138 -14.58853 -14.45886 -14.41185 -14.13284 -13.81039 -13.69160 -13.48459 -13.40452 -13.17391 -12.63216 -12.50957 -12.40794 -12.00104 -11.68377 -11.36778 -11.35183 -11.17217 -11.03210 -10.90360 -10.70791 -10.64322 -10.49098 -10.44109 -10.28523 -10.23599 -9.89325 -9.61919 -9.23190 -9.01583 -8.49680 -7.35296 -5.84686 -3.20566 1.24906 1.76722 2.49765 2.59517 2.67445 3.10251 3.30454 3.33668 3.41097 3.67209 4.29353 4.34884 4.51436 4.61449 4.79597 4.87501 4.90908 5.01999 5.10401 5.22006 5.26633 5.29524 5.46792 5.48934 5.54558 5.57252 5.64908 5.69129 5.79495 5.86246 5.94855 5.97669 6.11365 6.18004 6.23647 6.36088 6.41260 6.46358 6.58033 6.64458 6.68289 6.78937 6.97807 7.41651 7.76062 7.90898 8.08460 8.34318 9.12169 9.84884 10.04079 11.33565 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015654 B = 0.003103 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.195309 B = 9020.528104 C = 9684.972807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.106 4.106 4 H 0.072 0.928 5 C 0.117 3.883 6 N -0.600 5.600 7 C 0.493 3.507 8 O -0.542 6.542 9 C 0.134 3.866 10 N -0.607 5.607 11 C 0.064 3.936 12 C 0.530 3.470 13 O -0.474 6.474 14 N -0.678 5.678 15 C 0.707 3.293 16 O -0.537 6.537 17 C 0.109 3.891 18 C -0.150 4.150 19 C 0.184 3.816 20 H 0.061 0.939 21 N -0.744 5.744 22 C -0.242 4.242 23 H 0.091 0.909 24 C 0.008 3.992 25 N -0.932 5.932 26 Si 0.877 3.123 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.278 1.278 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.432 0.568 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.053 0.947 46 H 0.360 0.640 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.230 16.428 -5.088 21.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.126 4.126 4 H 0.090 0.910 5 C -0.005 4.005 6 N -0.333 5.333 7 C 0.279 3.721 8 O -0.420 6.420 9 C 0.009 3.991 10 N -0.346 5.346 11 C -0.062 4.062 12 C 0.317 3.683 13 O -0.344 6.344 14 N -0.349 5.349 15 C 0.407 3.593 16 O -0.410 6.410 17 C -0.014 4.014 18 C -0.191 4.191 19 C 0.074 3.926 20 H 0.079 0.921 21 N -0.387 5.387 22 C -0.372 4.372 23 H 0.109 0.891 24 C -0.188 4.188 25 N -0.580 5.580 26 Si 0.708 3.292 27 H -0.210 1.210 28 H -0.217 1.217 29 H -0.205 1.205 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.275 0.725 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.100 0.900 45 H 0.072 0.928 46 H 0.194 0.806 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.677 16.342 -4.834 21.240 hybrid contribution -0.617 -0.077 1.607 1.723 sum -13.294 16.265 -3.227 21.253 Atomic orbital electron populations 1.21860 0.96605 1.01243 1.01438 1.21434 0.94493 0.95660 1.03366 1.21803 0.97449 0.96254 0.97066 0.90965 1.21710 0.99099 0.81557 0.98131 1.48164 1.08827 1.06470 1.69793 1.20970 0.87455 0.86516 0.77153 1.90686 1.14786 1.86412 1.50075 1.21257 0.88355 0.83987 1.05543 1.46975 1.40811 1.41290 1.05516 1.22542 0.95042 0.95730 0.92913 1.20783 0.82380 0.81952 0.83226 1.90859 1.32423 1.35043 1.76100 1.44308 1.38601 1.40553 1.11389 1.15757 0.79517 0.79155 0.84826 1.91048 1.59779 1.61828 1.28322 1.21746 0.78872 1.00272 1.00479 1.22436 1.02504 0.98908 0.95261 1.20188 0.89376 0.90696 0.92310 0.92091 1.42850 1.19697 1.65888 1.10306 1.19030 0.92075 1.26927 0.99185 0.89144 1.24634 0.96418 1.00208 0.97514 1.69683 1.16254 1.41139 1.30896 0.86686 0.79466 0.77863 0.85205 1.21048 1.21726 1.20468 0.92890 0.93126 0.93002 0.91427 0.91143 0.91486 0.89263 0.86115 0.85995 0.85605 0.85609 0.72543 0.90932 0.89777 0.89957 0.92838 0.80576 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.67 37.16 0.36 -1.48 16 2 C -0.11 -1.56 5.19 -26.73 -0.14 -1.70 16 3 C -0.11 -1.47 2.14 -90.50 -0.19 -1.66 16 4 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 5 C 0.12 1.72 5.03 -3.71 -0.02 1.70 16 6 N -0.60 -8.00 2.98 -173.02 -0.52 -8.51 16 7 C 0.49 6.41 7.77 -10.99 -0.09 6.32 16 8 O -0.54 -8.82 15.84 5.56 0.09 -8.73 16 9 C 0.13 1.19 4.98 -5.19 -0.03 1.16 16 10 N -0.61 -5.64 2.51 -181.39 -0.45 -6.09 16 11 C 0.06 0.40 7.66 -4.31 -0.03 0.37 16 12 C 0.53 4.46 8.81 -10.55 -0.09 4.37 16 13 O -0.47 -5.21 18.02 5.60 0.10 -5.11 16 14 N -0.68 -5.89 5.70 -15.79 -0.09 -5.98 16 15 C 0.71 8.11 8.68 -88.02 -0.76 7.35 16 16 O -0.54 -8.28 17.71 5.34 0.09 -8.19 16 17 C 0.11 1.36 6.06 -3.93 -0.02 1.34 16 18 C -0.15 -2.02 5.76 -26.84 -0.15 -2.17 16 19 C 0.18 2.97 2.53 -67.89 -0.17 2.79 16 20 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 21 N -0.74 -15.20 3.53 -53.39 -0.19 -15.39 16 22 C -0.24 -6.15 10.41 -15.06 -0.16 -6.30 16 23 H 0.09 2.48 8.06 -52.48 -0.42 2.05 16 24 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 25 N -0.93 -27.87 13.97 55.49 0.78 -27.10 16 26 Si 0.88 21.12 27.73 -169.99 -4.71 16.41 16 27 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 29 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 30 H 0.05 0.64 6.70 -51.93 -0.35 0.29 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.07 1.13 7.70 -51.93 -0.40 0.73 16 35 H 0.07 1.10 6.64 -51.93 -0.34 0.76 16 36 H 0.09 1.33 5.72 -51.93 -0.30 1.04 16 37 H 0.12 0.61 7.68 -51.93 -0.40 0.21 16 38 H 0.12 1.07 7.84 -51.93 -0.41 0.67 16 39 H 0.13 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.13 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.43 2.94 8.96 -40.82 -0.37 2.57 16 42 H 0.07 0.64 5.93 -51.93 -0.31 0.33 16 43 H 0.08 1.30 7.74 -51.93 -0.40 0.90 16 44 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.36 7.52 3.81 -40.82 -0.16 7.36 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 377.22 15.07 5.68 5.68 Total: -1.00 -35.12 377.22 -7.63 -42.76 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -6.82 Total: 8.03 kcal Atomic # 6 Polarization: 13.82 SS G_CDS: -1.60 Total: 12.22 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: -0.47 Total: -63.08 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: 0.28 Total: -22.03 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.71 Total: 16.41 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.12 -7.63 -42.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037940631.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.806 kcal (2) G-P(sol) polarization free energy of solvation -35.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds