Wall clock time and date at job start Tue Mar 31 2020 21:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47105 * 2 1 4 4 H 1.09002 * 109.49719 * 304.94022 * 3 2 1 5 5 C 1.53196 * 109.49623 * 65.00091 * 3 2 1 6 6 N 1.46924 * 108.77608 * 174.62152 * 5 3 2 7 7 C 1.34777 * 120.63377 * 126.36764 * 6 5 3 8 8 O 1.21280 * 119.99903 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.99783 * 179.97438 * 7 6 5 10 10 N 1.46502 * 109.46948 * 180.02562 * 9 7 6 11 11 C 1.47312 * 126.68837 * 269.98314 * 10 9 7 12 12 C 1.51588 * 103.59518 * 180.02562 * 11 10 9 13 13 O 1.21229 * 127.16201 * 180.02562 * 12 11 10 14 14 N 1.34766 * 105.68123 * 0.02562 * 12 11 10 15 15 C 1.33794 * 111.64801 * 359.97438 * 14 12 11 16 16 O 1.21533 * 123.77500 * 179.73376 * 15 14 12 17 17 C 1.46935 * 118.73528 * 306.64341 * 6 5 3 18 18 C 1.52758 * 109.00905 * 53.31026 * 17 6 5 19 19 C 1.53038 * 109.52677 * 184.85246 * 3 2 1 20 20 H 1.09002 * 109.45624 * 58.66231 * 19 3 2 21 21 N 1.46501 * 109.46077 * 298.69406 * 19 3 2 22 22 C 1.36930 * 120.00125 * 154.99910 * 21 19 3 23 23 H 1.08006 * 119.99843 * 359.97438 * 22 21 19 24 24 C 1.38809 * 120.00277 * 179.97438 * 22 21 19 25 25 N 1.31622 * 120.00601 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 119.99745 * 359.97438 * 24 22 21 27 27 H 1.48496 * 109.47259 * 89.99915 * 26 24 22 28 28 H 1.48501 * 109.47032 * 210.00011 * 26 24 22 29 29 H 1.48504 * 109.47045 * 329.99642 * 26 24 22 30 30 H 1.09003 * 109.47240 * 299.99628 * 1 2 3 31 31 H 1.09000 * 109.47363 * 60.00213 * 1 2 3 32 32 H 1.09003 * 109.46906 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46840 * 240.00013 * 2 1 3 34 34 H 1.09002 * 109.46950 * 120.00123 * 2 1 3 35 35 H 1.09001 * 109.58822 * 54.83137 * 5 3 2 36 36 H 1.09004 * 109.58781 * 294.40576 * 5 3 2 37 37 H 1.09002 * 109.47078 * 60.00487 * 9 7 6 38 38 H 1.09003 * 109.47557 * 299.99883 * 9 7 6 39 39 H 1.09006 * 110.60307 * 61.50966 * 11 10 9 40 40 H 1.08999 * 110.73516 * 298.62335 * 11 10 9 41 41 H 0.96997 * 124.18067 * 179.97438 * 14 12 11 42 42 H 1.09000 * 109.58482 * 173.14731 * 17 6 5 43 43 H 1.09004 * 109.58197 * 293.56938 * 17 6 5 44 44 H 1.08997 * 109.56133 * 185.55633 * 18 17 6 45 45 H 1.08994 * 109.36108 * 65.49936 * 18 17 6 46 46 H 0.97002 * 119.99738 * 334.98971 * 21 19 3 47 47 H 0.96994 * 120.00393 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9816 -0.8423 5 6 1.6350 2.1279 1.3088 6 7 2.2408 3.4659 1.3490 7 6 1.4803 4.5579 1.5626 8 8 0.2838 4.4416 1.7233 9 6 2.1167 5.9234 1.6016 10 7 1.0863 6.9355 1.8469 11 6 0.2998 7.6552 0.8303 12 6 -0.5962 8.5628 1.6496 13 8 -1.4219 9.3467 1.2332 14 7 -0.2839 8.3170 2.9373 15 6 0.6745 7.3896 3.0444 16 8 1.1264 7.0043 4.1048 17 6 3.6906 3.5913 1.1459 18 6 4.0733 2.8890 -0.1555 19 6 3.5655 1.4457 -0.1220 20 1 3.8573 0.9369 -1.0408 21 7 4.1486 0.7496 1.0277 22 6 5.3869 0.1744 0.9239 23 1 5.9336 0.2336 -0.0057 24 6 5.9396 -0.4847 2.0133 25 7 7.1301 -1.0371 1.9138 26 14 4.9943 -0.5864 3.6213 27 1 4.1521 -1.8094 3.6240 28 1 5.9513 -0.6419 4.7555 29 1 4.1280 0.6115 3.7629 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.9912 1.5399 2.1547 36 1 0.5496 2.2168 1.3542 37 1 2.6041 6.1244 0.6476 38 1 2.8562 5.9569 2.4017 39 1 -0.2964 6.9577 0.2418 40 1 0.9512 8.2422 0.1827 41 1 -0.7022 8.7580 3.6933 42 1 3.9610 4.6454 1.0839 43 1 4.2178 3.1251 1.9783 44 1 5.1577 2.8906 -0.2659 45 1 3.6207 3.4145 -0.9963 46 1 3.6574 0.6963 1.8625 47 1 7.5161 -1.4980 2.6750 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037940631.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:37 Heat of formation + Delta-G solvation = -82.927488 kcal Electronic energy + Delta-G solvation = -30722.824222 eV Core-core repulsion = 26520.037092 eV Total energy + Delta-G solvation = -4202.787129 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.29384 -41.38890 -39.80186 -39.23360 -37.31195 -35.96553 -35.61353 -35.28889 -33.54455 -31.45009 -31.04666 -29.71024 -28.07862 -26.27651 -25.15845 -24.91654 -23.38783 -22.74105 -22.10709 -20.84316 -19.87321 -19.61999 -19.25913 -18.61445 -17.78834 -17.61840 -17.10892 -16.93851 -16.60851 -16.31236 -16.03179 -15.80007 -15.54785 -15.29235 -15.14607 -14.96223 -14.86132 -14.63216 -14.44377 -14.22748 -14.01191 -13.74929 -13.33946 -13.14435 -12.99758 -12.90779 -12.62762 -12.42850 -12.20227 -12.15230 -12.00709 -11.84968 -11.60175 -11.51543 -11.51160 -11.44921 -11.24606 -11.11337 -10.87012 -10.03192 -9.63936 -9.20219 -7.97144 -5.26707 0.55071 1.06795 1.36404 1.37605 1.44328 1.54339 1.81785 1.96942 2.19407 2.49476 3.04791 3.35758 3.42876 3.64906 3.73871 3.80255 3.97913 4.02817 4.20714 4.29142 4.32591 4.35111 4.36577 4.40381 4.45070 4.61215 4.63954 4.70558 4.84160 4.88334 4.98096 5.02149 5.06053 5.12565 5.19590 5.23326 5.27675 5.35036 5.39646 5.50365 5.67253 5.87238 5.91084 6.27639 6.30476 6.42548 6.96724 7.09930 7.14845 7.92917 8.09317 9.24885 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015654 B = 0.003103 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.195309 B = 9020.528104 C = 9684.972807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C -0.091 4.091 4 H 0.096 0.904 5 C 0.120 3.880 6 N -0.600 5.600 7 C 0.491 3.509 8 O -0.578 6.578 9 C 0.134 3.866 10 N -0.604 5.604 11 C 0.069 3.931 12 C 0.533 3.467 13 O -0.502 6.502 14 N -0.674 5.674 15 C 0.701 3.299 16 O -0.585 6.585 17 C 0.110 3.890 18 C -0.142 4.142 19 C 0.173 3.827 20 H 0.050 0.950 21 N -0.744 5.744 22 C -0.205 4.205 23 H 0.066 0.934 24 C -0.059 4.059 25 N -0.984 5.984 26 Si 0.935 3.065 27 H -0.286 1.286 28 H -0.302 1.302 29 H -0.259 1.259 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.043 0.957 35 H 0.042 0.958 36 H 0.087 0.913 37 H 0.174 0.826 38 H 0.126 0.874 39 H 0.136 0.864 40 H 0.172 0.828 41 H 0.437 0.563 42 H 0.121 0.879 43 H 0.051 0.949 44 H 0.067 0.933 45 H 0.090 0.910 46 H 0.360 0.640 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.607 18.854 -6.804 24.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C -0.111 4.111 4 H 0.114 0.886 5 C -0.004 4.004 6 N -0.333 5.333 7 C 0.279 3.721 8 O -0.458 6.458 9 C 0.009 3.991 10 N -0.341 5.341 11 C -0.055 4.055 12 C 0.322 3.678 13 O -0.374 6.374 14 N -0.343 5.343 15 C 0.402 3.598 16 O -0.462 6.462 17 C -0.011 4.011 18 C -0.182 4.182 19 C 0.066 3.934 20 H 0.069 0.931 21 N -0.388 5.388 22 C -0.337 4.337 23 H 0.084 0.916 24 C -0.250 4.250 25 N -0.636 5.636 26 Si 0.765 3.235 27 H -0.213 1.213 28 H -0.229 1.229 29 H -0.185 1.185 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.105 0.895 37 H 0.191 0.809 38 H 0.144 0.856 39 H 0.154 0.846 40 H 0.189 0.811 41 H 0.280 0.720 42 H 0.139 0.861 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.109 0.891 46 H 0.194 0.806 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.111 18.826 -6.607 24.437 hybrid contribution -0.262 -0.806 2.021 2.191 sum -14.373 18.020 -4.586 23.501 Atomic orbital electron populations 1.21790 0.94759 1.01890 1.01974 1.21417 0.96131 0.95568 1.01917 1.21686 0.95480 0.96343 0.97600 0.88557 1.21547 0.98978 0.82418 0.97414 1.48200 1.09101 1.06100 1.69862 1.21726 0.87013 0.87662 0.75712 1.90677 1.16553 1.87064 1.51525 1.21510 0.87884 0.81270 1.08386 1.47108 1.40716 1.40857 1.05409 1.22813 0.95125 0.95498 0.92039 1.21110 0.82010 0.81636 0.83073 1.90857 1.33732 1.36452 1.76339 1.44283 1.37930 1.39939 1.12158 1.15991 0.79576 0.79305 0.84924 1.91014 1.61447 1.63539 1.30176 1.21777 0.78026 1.02815 0.98521 1.22295 1.01732 0.96900 0.97303 1.20490 0.90933 0.92026 0.89990 0.93147 1.42862 1.18098 1.66067 1.11774 1.19009 0.92916 1.24263 0.97462 0.91626 1.25235 0.97413 1.01603 1.00747 1.69837 1.18423 1.43778 1.31574 0.85724 0.78115 0.78334 0.81361 1.21283 1.22948 1.18458 0.93238 0.91592 0.92412 0.91647 0.93816 0.93954 0.89483 0.80869 0.85639 0.84627 0.81107 0.71981 0.86119 0.93033 0.91385 0.89122 0.80623 0.93720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 9.67 71.98 0.70 -2.53 16 2 C -0.11 -3.00 5.19 30.59 0.16 -2.84 16 3 C -0.09 -2.33 2.14 -10.72 -0.02 -2.36 16 4 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 5 C 0.12 3.29 5.03 86.36 0.43 3.73 16 6 N -0.60 -14.22 2.98 -819.71 -2.44 -16.66 16 7 C 0.49 11.10 7.77 87.66 0.68 11.78 16 8 O -0.58 -17.46 15.84 -3.03 -0.05 -17.51 16 9 C 0.13 1.76 4.98 85.63 0.43 2.19 16 10 N -0.60 -8.99 2.51 -846.21 -2.12 -11.11 16 11 C 0.07 0.58 7.66 85.76 0.66 1.24 16 12 C 0.53 7.66 8.81 87.94 0.77 8.44 16 13 O -0.50 -10.09 18.02 -2.87 -0.05 -10.14 16 14 N -0.67 -10.66 5.70 -441.12 -2.52 -13.18 16 15 C 0.70 14.82 8.68 179.44 1.56 16.38 16 16 O -0.59 -17.66 17.71 -3.82 -0.07 -17.73 16 17 C 0.11 2.40 6.06 86.22 0.52 2.92 16 18 C -0.14 -3.36 5.76 30.53 0.18 -3.18 16 19 C 0.17 5.30 2.53 45.02 0.11 5.41 16 20 H 0.05 1.66 8.08 -2.39 -0.02 1.64 16 21 N -0.74 -30.16 3.53 -322.82 -1.14 -31.30 16 22 C -0.21 -10.54 10.41 84.03 0.87 -9.67 16 23 H 0.07 3.68 8.06 -2.91 -0.02 3.65 16 24 C -0.06 -3.29 5.50 84.86 0.47 -2.82 16 25 N -0.98 -60.84 13.97 21.65 0.30 -60.54 16 26 Si 0.93 44.67 27.73 68.60 1.90 46.57 16 27 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 28 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 29 H -0.26 -11.37 6.52 99.48 0.65 -10.72 16 30 H 0.05 1.12 6.70 -2.39 -0.02 1.10 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.04 1.40 7.70 -2.39 -0.02 1.38 16 35 H 0.04 1.37 6.64 -2.39 -0.02 1.35 16 36 H 0.09 2.46 5.72 -2.39 -0.01 2.45 16 37 H 0.17 0.48 7.68 -2.39 -0.02 0.46 16 38 H 0.13 1.69 7.84 -2.39 -0.02 1.68 16 39 H 0.14 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.17 -0.01 8.14 -2.39 -0.02 -0.03 16 41 H 0.44 5.64 8.96 -92.71 -0.83 4.81 16 42 H 0.12 1.46 5.93 -2.39 -0.01 1.45 16 43 H 0.05 1.49 7.74 -2.38 -0.02 1.48 16 44 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.36 14.87 3.81 -92.71 -0.35 14.52 16 47 H 0.25 15.21 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -80.92 377.22 1.11 -79.81 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: -0.22 Total: 23.09 kcal Atomic # 6 Polarization: 21.18 SS G_CDS: 7.52 Total: 28.69 kcal Atomic # 7 Polarization: -124.87 SS G_CDS: -7.92 Total: -132.79 kcal Atomic # 8 Polarization: -45.21 SS G_CDS: -0.17 Total: -45.38 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.90 Total: 46.57 kcal Total: -80.92 1.11 -79.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037940631.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.118 kcal (2) G-P(sol) polarization free energy of solvation -80.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds