Wall clock time and date at job start Tue Mar 31 2020 21:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46857 * 2 1 4 4 H 1.08996 * 109.49460 * 304.93899 * 3 2 1 5 5 C 1.53192 * 109.49604 * 65.00234 * 3 2 1 6 6 N 1.46927 * 108.77318 * 174.58798 * 5 3 2 7 7 C 1.34772 * 120.63425 * 126.36858 * 6 5 3 8 8 O 1.21285 * 120.00006 * 0.02562 * 7 6 5 9 9 C 1.50702 * 120.00175 * 180.02562 * 7 6 5 10 10 N 1.46508 * 109.47006 * 180.02562 * 9 7 6 11 11 C 1.34768 * 124.17551 * 89.99992 * 10 9 7 12 12 O 1.21234 * 127.15776 * 359.97438 * 11 10 9 13 13 C 1.51583 * 105.68191 * 179.97438 * 11 10 9 14 14 N 1.47311 * 103.59456 * 359.97438 * 13 11 10 15 15 C 1.33790 * 124.17482 * 269.69954 * 10 9 7 16 16 O 1.21530 * 123.77309 * 0.03926 * 15 10 9 17 17 C 1.46926 * 118.73580 * 306.38910 * 6 5 3 18 18 C 1.53192 * 108.77820 * 53.60911 * 17 6 5 19 19 C 1.53033 * 109.31270 * 305.36633 * 18 17 6 20 20 H 1.09001 * 109.46425 * 181.38151 * 19 18 17 21 21 N 1.46502 * 109.46177 * 301.34300 * 19 18 17 22 22 C 1.36934 * 119.99932 * 275.07154 * 21 19 18 23 23 H 1.08006 * 120.00240 * 359.97438 * 22 21 19 24 24 C 1.38812 * 120.00092 * 179.97438 * 22 21 19 25 25 N 1.31612 * 120.00084 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00127 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47323 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47447 * 119.99966 * 26 24 22 29 29 H 1.48498 * 109.46946 * 240.00049 * 26 24 22 30 30 H 1.09000 * 109.46921 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46973 * 299.99475 * 1 2 3 32 32 H 1.08998 * 109.47789 * 59.99959 * 1 2 3 33 33 H 1.08996 * 109.47265 * 239.99989 * 2 1 3 34 34 H 1.09001 * 109.47229 * 119.99551 * 2 1 3 35 35 H 1.08997 * 109.58972 * 54.79788 * 5 3 2 36 36 H 1.09000 * 109.58650 * 294.37236 * 5 3 2 37 37 H 1.08997 * 109.46858 * 299.99583 * 9 7 6 38 38 H 1.08989 * 109.47225 * 60.00023 * 9 7 6 39 39 H 1.08995 * 110.59846 * 118.52710 * 13 11 10 40 40 H 1.09006 * 110.59889 * 241.31813 * 13 11 10 41 41 H 0.97003 * 126.69369 * 180.02562 * 14 13 11 42 42 H 1.09006 * 109.58406 * 173.39827 * 17 6 5 43 43 H 1.09002 * 109.59019 * 293.81816 * 17 6 5 44 44 H 1.09000 * 109.49511 * 65.31256 * 18 17 6 45 45 H 1.08995 * 109.49883 * 185.40976 * 18 17 6 46 46 H 0.96994 * 120.00060 * 95.06337 * 21 19 18 47 47 H 0.97004 * 120.00333 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6064 1.9816 -0.8423 5 6 1.6350 2.1280 1.3088 6 7 2.2414 3.4657 1.3493 7 6 1.4814 4.5580 1.5629 8 8 0.2849 4.4422 1.7243 9 6 2.1182 5.9233 1.6010 10 7 1.0882 6.9359 1.8465 11 6 0.7148 7.3543 3.0720 12 8 1.1508 6.9778 4.1387 13 6 -0.3639 8.3935 2.8391 14 7 -0.4839 8.4452 1.3717 15 6 0.4062 7.5635 0.8816 16 8 0.5702 7.3577 -0.3049 17 6 3.6920 3.5899 1.1522 18 6 4.0740 2.8880 -0.1548 19 6 3.5655 1.4450 -0.1217 20 1 3.8573 0.9359 -1.0403 21 7 4.1479 0.7485 1.0281 22 6 5.3860 0.1728 0.9245 23 1 5.9330 0.2318 -0.0049 24 6 5.9381 -0.4867 2.0141 25 7 5.2718 -0.5582 3.1468 26 14 7.6268 -1.2727 1.8726 27 1 8.1618 -1.0536 0.5047 28 1 8.5432 -0.6594 2.8671 29 1 7.5176 -2.7306 2.1332 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.9907 1.5397 2.1547 36 1 0.5496 2.2173 1.3539 37 1 2.8580 5.9569 2.4008 38 1 2.6052 6.1239 0.6469 39 1 -1.3045 8.0776 3.2902 40 1 -0.0560 9.3613 3.2350 41 1 -1.0849 9.0078 0.8588 42 1 3.9639 4.6439 1.0940 43 1 4.2156 3.1209 1.9853 44 1 3.6217 3.4139 -0.9957 45 1 5.1583 2.8893 -0.2650 46 1 3.6566 0.6953 1.8627 47 1 5.6575 -1.0193 3.9081 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037987468.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:54 Heat of formation + Delta-G solvation = -59.329868 kcal Electronic energy + Delta-G solvation = -30915.505751 eV Core-core repulsion = 26713.741891 eV Total energy + Delta-G solvation = -4201.763860 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.57209 -40.03804 -38.76915 -37.87847 -36.30612 -34.84938 -34.49359 -33.74373 -31.72129 -29.76756 -29.31025 -28.23182 -27.59837 -24.87073 -23.82623 -23.49771 -23.13211 -21.41589 -20.79951 -19.58125 -18.43581 -18.23333 -17.65306 -17.32971 -16.99058 -16.57402 -16.04443 -15.53229 -15.31108 -15.19933 -14.63068 -14.44942 -14.35942 -14.25888 -13.99135 -13.76530 -13.53719 -13.33703 -13.25746 -13.04468 -12.57571 -12.29315 -12.24852 -11.76903 -11.40059 -11.24064 -11.09997 -10.99518 -10.82357 -10.75973 -10.54642 -10.50626 -10.31293 -10.26416 -10.14664 -9.84041 -9.79654 -9.56506 -9.43004 -8.94279 -8.28800 -6.99142 -5.80280 -3.08883 1.41610 1.83493 2.66371 2.72201 2.86506 3.27197 3.40523 3.46921 3.48857 3.71737 4.46881 4.49315 4.56356 4.65140 4.83225 4.96839 5.06825 5.18542 5.25748 5.32025 5.35695 5.46981 5.52480 5.57823 5.69758 5.79621 5.80941 5.91286 6.07448 6.14848 6.16755 6.34100 6.37203 6.40654 6.44287 6.55667 6.60228 6.70058 6.75267 6.76615 6.92658 6.98930 7.11922 7.59878 7.68161 7.85832 8.24033 8.37990 9.49870 10.06288 10.41411 11.42046 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015346 B = 0.003115 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.189013 B = 8987.083803 C = 9745.242254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.067 0.933 5 C 0.120 3.880 6 N -0.595 5.595 7 C 0.502 3.498 8 O -0.545 6.545 9 C 0.101 3.899 10 N -0.561 5.561 11 C 0.524 3.476 12 O -0.464 6.464 13 C 0.066 3.934 14 N -0.729 5.729 15 C 0.708 3.292 16 O -0.540 6.540 17 C 0.110 3.890 18 C -0.151 4.151 19 C 0.178 3.822 20 H 0.052 0.948 21 N -0.719 5.719 22 C -0.237 4.237 23 H 0.070 0.930 24 C -0.011 4.011 25 N -0.931 5.931 26 Si 0.903 3.097 27 H -0.281 1.281 28 H -0.293 1.293 29 H -0.293 1.293 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.441 0.559 42 H 0.068 0.932 43 H 0.090 0.910 44 H 0.050 0.950 45 H 0.076 0.924 46 H 0.384 0.616 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.876 17.975 -3.183 21.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.085 0.915 5 C -0.002 4.002 6 N -0.327 5.327 7 C 0.288 3.712 8 O -0.423 6.423 9 C -0.024 4.024 10 N -0.306 5.306 11 C 0.311 3.689 12 O -0.333 6.333 13 C -0.061 4.061 14 N -0.394 5.394 15 C 0.408 3.592 16 O -0.413 6.413 17 C -0.012 4.012 18 C -0.192 4.192 19 C 0.068 3.932 20 H 0.070 0.930 21 N -0.361 5.361 22 C -0.368 4.368 23 H 0.088 0.912 24 C -0.208 4.208 25 N -0.580 5.580 26 Si 0.735 3.265 27 H -0.206 1.206 28 H -0.220 1.220 29 H -0.220 1.220 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.285 0.715 42 H 0.086 0.914 43 H 0.108 0.892 44 H 0.069 0.931 45 H 0.095 0.905 46 H 0.219 0.781 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.920 17.428 -3.180 20.811 hybrid contribution 0.685 -0.279 0.071 0.743 sum -10.235 17.149 -3.110 20.212 Atomic orbital electron populations 1.21854 0.96842 1.01025 1.01342 1.21414 0.94258 0.95693 1.03397 1.21757 0.97422 0.96176 0.96983 0.91501 1.21718 0.98767 0.81240 0.98479 1.48075 1.08741 1.06435 1.69431 1.20529 0.87309 0.86128 0.77244 1.90674 1.14681 1.86360 1.50611 1.21551 0.89250 0.85219 1.06392 1.45850 1.38039 1.38007 1.08753 1.20891 0.82599 0.82047 0.83343 1.90851 1.57062 1.58764 1.26586 1.22434 1.00408 1.00659 0.82630 1.45336 1.42273 1.44728 1.07063 1.15756 0.79433 0.79224 0.84754 1.91024 1.69119 1.67713 1.13408 1.21822 0.78882 0.99925 1.00571 1.22532 1.01967 0.99349 0.95323 1.20218 0.89698 0.90622 0.92661 0.93013 1.42493 1.19042 1.64031 1.10573 1.19256 0.93506 1.26984 0.97078 0.91191 1.24703 0.98535 1.01481 0.96034 1.69655 1.38005 1.48057 1.02240 0.86176 0.84289 0.78925 0.77115 1.20643 1.21991 1.22015 0.93146 0.92849 0.93373 0.91975 0.90466 0.90528 0.89620 0.85669 0.85567 0.85795 0.85845 0.71456 0.91413 0.89182 0.93081 0.90511 0.78101 0.93571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.67 37.16 0.36 -1.78 16 2 C -0.11 -1.77 5.19 -26.73 -0.14 -1.90 16 3 C -0.10 -1.69 2.14 -90.50 -0.19 -1.89 16 4 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 5 C 0.12 2.05 5.03 -3.71 -0.02 2.03 16 6 N -0.59 -9.58 2.97 -172.77 -0.51 -10.09 16 7 C 0.50 8.14 7.77 -10.99 -0.09 8.06 16 8 O -0.55 -10.46 15.84 5.55 0.09 -10.37 16 9 C 0.10 1.26 4.53 -5.19 -0.02 1.24 16 10 N -0.56 -6.81 2.09 -122.02 -0.26 -7.06 16 11 C 0.52 5.74 8.32 -10.55 -0.09 5.65 16 12 O -0.46 -6.52 17.76 5.60 0.10 -6.42 16 13 C 0.07 0.38 7.97 -4.32 -0.03 0.34 16 14 N -0.73 -5.19 6.58 -65.74 -0.43 -5.63 16 15 C 0.71 8.51 8.62 -88.02 -0.76 7.75 16 16 O -0.54 -8.41 17.48 5.34 0.09 -8.31 16 17 C 0.11 1.67 6.08 -3.71 -0.02 1.65 16 18 C -0.15 -2.40 5.78 -26.61 -0.15 -2.55 16 19 C 0.18 3.26 2.53 -67.89 -0.17 3.09 16 20 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 21 N -0.72 -16.18 3.72 -53.39 -0.20 -16.38 16 22 C -0.24 -6.08 9.93 -15.06 -0.15 -6.23 16 23 H 0.07 1.77 7.83 -52.48 -0.41 1.35 16 24 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 25 N -0.93 -26.80 13.06 55.49 0.72 -26.08 16 26 Si 0.90 21.60 29.55 -169.99 -5.02 16.58 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.75 6.70 -51.93 -0.35 0.41 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 1.44 7.69 -51.93 -0.40 1.04 16 35 H 0.08 1.45 6.64 -51.93 -0.34 1.10 16 36 H 0.09 1.50 5.72 -51.93 -0.30 1.20 16 37 H 0.13 1.36 7.80 -51.93 -0.41 0.96 16 38 H 0.13 1.39 7.40 -51.94 -0.38 1.01 16 39 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.12 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.44 1.91 8.96 -40.82 -0.37 1.54 16 42 H 0.07 0.80 5.93 -51.93 -0.31 0.49 16 43 H 0.09 1.61 7.74 -51.93 -0.40 1.21 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.38 9.32 5.94 -40.82 -0.24 9.07 16 47 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 379.32 15.07 5.72 5.72 Total: -1.00 -34.89 379.32 -8.12 -43.01 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -6.84 Total: 9.99 kcal Atomic # 6 Polarization: 16.63 SS G_CDS: -1.58 Total: 15.06 kcal Atomic # 7 Polarization: -64.57 SS G_CDS: -0.68 Total: -65.24 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: 0.28 Total: -25.10 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.89 -8.12 -43.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037987468.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.322 kcal (2) G-P(sol) polarization free energy of solvation -34.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds