Wall clock time and date at job start Tue Mar 31 2020 21:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46857 * 2 1 4 4 H 1.08996 * 109.49460 * 304.93899 * 3 2 1 5 5 C 1.53192 * 109.49604 * 65.00234 * 3 2 1 6 6 N 1.46927 * 108.77318 * 174.58798 * 5 3 2 7 7 C 1.34772 * 120.63425 * 126.36858 * 6 5 3 8 8 O 1.21285 * 120.00006 * 0.02562 * 7 6 5 9 9 C 1.50702 * 120.00175 * 180.02562 * 7 6 5 10 10 N 1.46508 * 109.47006 * 180.02562 * 9 7 6 11 11 C 1.34768 * 124.17551 * 89.99992 * 10 9 7 12 12 O 1.21234 * 127.15776 * 359.97438 * 11 10 9 13 13 C 1.51583 * 105.68191 * 179.97438 * 11 10 9 14 14 N 1.47311 * 103.59456 * 359.97438 * 13 11 10 15 15 C 1.33790 * 124.17482 * 269.69954 * 10 9 7 16 16 O 1.21530 * 123.77309 * 0.03926 * 15 10 9 17 17 C 1.46926 * 118.73580 * 306.38910 * 6 5 3 18 18 C 1.53192 * 108.77820 * 53.60911 * 17 6 5 19 19 C 1.53033 * 109.31270 * 305.36633 * 18 17 6 20 20 H 1.09001 * 109.46425 * 181.38151 * 19 18 17 21 21 N 1.46502 * 109.46177 * 301.34300 * 19 18 17 22 22 C 1.36934 * 119.99932 * 275.07154 * 21 19 18 23 23 H 1.08006 * 120.00240 * 359.97438 * 22 21 19 24 24 C 1.38812 * 120.00092 * 179.97438 * 22 21 19 25 25 N 1.31612 * 120.00084 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00127 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47323 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47447 * 119.99966 * 26 24 22 29 29 H 1.48498 * 109.46946 * 240.00049 * 26 24 22 30 30 H 1.09000 * 109.46921 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46973 * 299.99475 * 1 2 3 32 32 H 1.08998 * 109.47789 * 59.99959 * 1 2 3 33 33 H 1.08996 * 109.47265 * 239.99989 * 2 1 3 34 34 H 1.09001 * 109.47229 * 119.99551 * 2 1 3 35 35 H 1.08997 * 109.58972 * 54.79788 * 5 3 2 36 36 H 1.09000 * 109.58650 * 294.37236 * 5 3 2 37 37 H 1.08997 * 109.46858 * 299.99583 * 9 7 6 38 38 H 1.08989 * 109.47225 * 60.00023 * 9 7 6 39 39 H 1.08995 * 110.59846 * 118.52710 * 13 11 10 40 40 H 1.09006 * 110.59889 * 241.31813 * 13 11 10 41 41 H 0.97003 * 126.69369 * 180.02562 * 14 13 11 42 42 H 1.09006 * 109.58406 * 173.39827 * 17 6 5 43 43 H 1.09002 * 109.59019 * 293.81816 * 17 6 5 44 44 H 1.09000 * 109.49511 * 65.31256 * 18 17 6 45 45 H 1.08995 * 109.49883 * 185.40976 * 18 17 6 46 46 H 0.96994 * 120.00060 * 95.06337 * 21 19 18 47 47 H 0.97004 * 120.00333 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6064 1.9816 -0.8423 5 6 1.6350 2.1280 1.3088 6 7 2.2414 3.4657 1.3493 7 6 1.4814 4.5580 1.5629 8 8 0.2849 4.4422 1.7243 9 6 2.1182 5.9233 1.6010 10 7 1.0882 6.9359 1.8465 11 6 0.7148 7.3543 3.0720 12 8 1.1508 6.9778 4.1387 13 6 -0.3639 8.3935 2.8391 14 7 -0.4839 8.4452 1.3717 15 6 0.4062 7.5635 0.8816 16 8 0.5702 7.3577 -0.3049 17 6 3.6920 3.5899 1.1522 18 6 4.0740 2.8880 -0.1548 19 6 3.5655 1.4450 -0.1217 20 1 3.8573 0.9359 -1.0403 21 7 4.1479 0.7485 1.0281 22 6 5.3860 0.1728 0.9245 23 1 5.9330 0.2318 -0.0049 24 6 5.9381 -0.4867 2.0141 25 7 5.2718 -0.5582 3.1468 26 14 7.6268 -1.2727 1.8726 27 1 8.1618 -1.0536 0.5047 28 1 8.5432 -0.6594 2.8671 29 1 7.5176 -2.7306 2.1332 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.9907 1.5397 2.1547 36 1 0.5496 2.2173 1.3539 37 1 2.8580 5.9569 2.4008 38 1 2.6052 6.1239 0.6469 39 1 -1.3045 8.0776 3.2902 40 1 -0.0560 9.3613 3.2350 41 1 -1.0849 9.0078 0.8588 42 1 3.9639 4.6439 1.0940 43 1 4.2156 3.1209 1.9853 44 1 3.6217 3.4139 -0.9957 45 1 5.1583 2.8893 -0.2650 46 1 3.6566 0.6953 1.8627 47 1 5.6575 -1.0193 3.9081 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037987468.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:53 Heat of formation + Delta-G solvation = -85.039566 kcal Electronic energy + Delta-G solvation = -30916.620607 eV Core-core repulsion = 26713.741891 eV Total energy + Delta-G solvation = -4202.878716 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.41079 -41.35618 -39.69167 -39.27005 -37.21088 -35.96946 -35.73935 -35.30573 -33.42172 -31.05457 -30.79610 -29.34983 -28.42744 -26.31931 -25.37305 -25.07638 -23.95189 -22.43280 -22.09985 -20.76920 -19.78270 -19.27492 -19.06629 -18.72029 -17.89374 -17.62263 -17.10946 -16.74189 -16.38517 -16.24960 -16.24159 -15.91919 -15.56425 -15.30170 -15.11602 -14.98431 -14.79817 -14.68975 -14.45525 -14.16367 -14.04131 -13.65463 -13.41324 -13.10112 -12.91484 -12.87837 -12.65529 -12.38499 -12.23245 -12.11735 -12.03588 -11.84825 -11.69366 -11.57833 -11.46422 -11.39611 -11.13761 -10.87464 -10.66167 -10.40424 -9.67632 -8.91158 -7.87263 -5.13466 0.60357 1.00053 1.40859 1.49658 1.51438 1.59688 1.76169 2.10850 2.28219 2.60877 3.02703 3.31483 3.46877 3.69886 3.77589 3.85455 3.98801 4.05777 4.08053 4.17540 4.29577 4.31133 4.32064 4.34953 4.41906 4.44771 4.58998 4.64790 4.67583 4.82254 4.86358 4.98457 5.02552 5.16295 5.20570 5.21856 5.30621 5.38057 5.50180 5.61277 5.63743 5.82135 5.98031 6.28712 6.34332 6.36177 6.94231 7.08297 7.42103 8.17854 8.41611 9.36110 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015346 B = 0.003115 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.189013 B = 8987.083803 C = 9745.242254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.092 4.092 4 H 0.082 0.918 5 C 0.126 3.874 6 N -0.596 5.596 7 C 0.497 3.503 8 O -0.579 6.579 9 C 0.101 3.899 10 N -0.569 5.569 11 C 0.513 3.487 12 O -0.503 6.503 13 C 0.079 3.921 14 N -0.706 5.706 15 C 0.700 3.300 16 O -0.583 6.583 17 C 0.114 3.886 18 C -0.143 4.143 19 C 0.172 3.828 20 H 0.048 0.952 21 N -0.724 5.724 22 C -0.223 4.223 23 H 0.076 0.924 24 C -0.073 4.073 25 N -0.969 5.969 26 Si 0.962 3.038 27 H -0.266 1.266 28 H -0.298 1.298 29 H -0.302 1.302 30 H 0.060 0.940 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.050 0.950 36 H 0.081 0.919 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.151 0.849 40 H 0.169 0.831 41 H 0.456 0.544 42 H 0.108 0.892 43 H 0.059 0.941 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.373 0.627 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.521 20.453 -4.432 23.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.112 4.112 4 H 0.100 0.900 5 C 0.004 3.996 6 N -0.327 5.327 7 C 0.285 3.715 8 O -0.459 6.459 9 C -0.024 4.024 10 N -0.314 5.314 11 C 0.303 3.697 12 O -0.375 6.375 13 C -0.047 4.047 14 N -0.371 5.371 15 C 0.400 3.600 16 O -0.459 6.459 17 C -0.008 4.008 18 C -0.184 4.184 19 C 0.063 3.937 20 H 0.066 0.934 21 N -0.365 5.365 22 C -0.355 4.355 23 H 0.094 0.906 24 C -0.265 4.265 25 N -0.620 5.620 26 Si 0.793 3.207 27 H -0.191 1.191 28 H -0.226 1.226 29 H -0.230 1.230 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.159 0.841 38 H 0.162 0.838 39 H 0.169 0.831 40 H 0.186 0.814 41 H 0.303 0.697 42 H 0.126 0.874 43 H 0.078 0.922 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.206 0.794 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -11.593 19.974 -4.474 23.523 hybrid contribution 0.802 -1.010 0.427 1.358 sum -10.791 18.964 -4.047 22.191 Atomic orbital electron populations 1.21783 0.94911 1.01929 1.01699 1.21340 0.95943 0.95186 1.01859 1.21658 0.96103 0.96423 0.96990 0.89973 1.21515 0.98427 0.81848 0.97860 1.48123 1.09127 1.06131 1.69331 1.21205 0.86978 0.87266 0.76039 1.90645 1.16224 1.87021 1.52012 1.21598 0.89630 0.83239 1.07969 1.46021 1.38058 1.37735 1.09562 1.21791 0.83066 0.82462 0.82335 1.90833 1.58627 1.60364 1.27647 1.22706 0.99561 1.00951 0.81509 1.45301 1.40763 1.43180 1.07896 1.15972 0.80044 0.79811 0.84149 1.90990 1.70617 1.69296 1.15015 1.21813 0.77965 1.02040 0.98954 1.22406 1.01789 0.97595 0.96580 1.20442 0.90787 0.91673 0.90767 0.93357 1.42598 1.18241 1.64337 1.11372 1.19597 0.94150 1.25039 0.96722 0.90578 1.25370 1.01742 1.03290 0.96131 1.69809 1.39495 1.49870 1.02857 0.85224 0.80775 0.77263 0.77407 1.19066 1.22618 1.23001 0.92044 0.93424 0.91975 0.91781 0.93613 0.93168 0.90044 0.84123 0.83773 0.83149 0.81369 0.69657 0.87404 0.92243 0.90589 0.90861 0.79358 0.94461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 9.67 71.98 0.70 -3.28 16 2 C -0.11 -3.41 5.19 30.60 0.16 -3.25 16 3 C -0.09 -2.98 2.14 -10.71 -0.02 -3.01 16 4 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 5 C 0.13 4.40 5.03 86.36 0.43 4.83 16 6 N -0.60 -19.02 2.97 -818.90 -2.43 -21.45 16 7 C 0.50 15.85 7.77 87.66 0.68 16.53 16 8 O -0.58 -22.15 15.84 -3.05 -0.05 -22.20 16 9 C 0.10 2.38 4.53 85.63 0.39 2.77 16 10 N -0.57 -12.89 2.09 -777.22 -1.63 -14.51 16 11 C 0.51 10.28 8.32 87.94 0.73 11.01 16 12 O -0.50 -13.69 17.76 -2.89 -0.05 -13.74 16 13 C 0.08 0.60 7.97 85.76 0.68 1.28 16 14 N -0.71 -7.83 6.58 -480.31 -3.16 -10.99 16 15 C 0.70 15.50 8.62 179.44 1.55 17.05 16 16 O -0.58 -17.44 17.48 -3.81 -0.07 -17.50 16 17 C 0.11 3.36 6.08 86.36 0.53 3.88 16 18 C -0.14 -4.34 5.78 30.67 0.18 -4.16 16 19 C 0.17 6.20 2.53 45.02 0.11 6.32 16 20 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 21 N -0.72 -33.22 3.72 -322.82 -1.20 -34.42 16 22 C -0.22 -11.49 9.93 84.03 0.83 -10.66 16 23 H 0.08 3.78 7.83 -2.91 -0.02 3.76 16 24 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 25 N -0.97 -57.60 13.06 21.65 0.28 -57.32 16 26 Si 0.96 45.05 29.55 68.60 2.03 47.08 16 27 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 28 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 29 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 30 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.05 1.34 6.70 -2.38 -0.02 1.33 16 32 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.05 1.77 7.69 -2.39 -0.02 1.75 16 35 H 0.05 2.01 6.64 -2.39 -0.02 2.00 16 36 H 0.08 2.91 5.72 -2.39 -0.01 2.89 16 37 H 0.14 2.85 7.80 -2.39 -0.02 2.84 16 38 H 0.14 2.86 7.40 -2.39 -0.02 2.84 16 39 H 0.15 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.17 -0.06 8.14 -2.38 -0.02 -0.08 16 41 H 0.46 2.39 8.96 -92.71 -0.83 1.56 16 42 H 0.11 2.29 5.93 -2.38 -0.01 2.28 16 43 H 0.06 2.15 7.74 -2.39 -0.02 2.13 16 44 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 46 H 0.37 18.87 5.94 -92.71 -0.55 18.32 16 47 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -78.92 379.32 0.77 -78.15 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: -0.36 Total: 31.15 kcal Atomic # 6 Polarization: 28.34 SS G_CDS: 7.41 Total: 35.76 kcal Atomic # 7 Polarization: -130.55 SS G_CDS: -8.14 Total: -138.69 kcal Atomic # 8 Polarization: -53.28 SS G_CDS: -0.17 Total: -53.45 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -78.92 0.77 -78.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037987468.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.894 kcal (2) G-P(sol) polarization free energy of solvation -78.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds