Wall clock time and date at job start Tue Mar 31 2020 20:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47042 * 2 1 4 4 N 1.29954 * 126.28649 * 90.02411 * 3 2 1 5 5 O 1.21294 * 110.24985 * 179.73386 * 4 3 2 6 6 C 1.33643 * 109.81343 * 359.97438 * 5 4 3 7 7 C 1.50698 * 126.55336 * 180.02562 * 6 5 4 8 8 O 1.42908 * 109.47024 * 269.97484 * 7 6 5 9 9 C 1.42897 * 114.00164 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47459 * 179.97438 * 9 8 7 11 11 O 1.21287 * 119.99598 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00360 * 179.97438 * 10 9 8 13 13 C 1.46501 * 119.99938 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46685 * 180.02562 * 13 12 10 15 15 C 1.53785 * 113.60957 * 274.13105 * 14 13 12 16 16 C 1.53955 * 87.01907 * 220.05154 * 15 14 13 17 17 N 1.46502 * 113.74027 * 139.94768 * 16 15 14 18 18 C 1.36931 * 120.00043 * 107.40442 * 17 16 15 19 19 H 1.08008 * 120.00234 * 359.97438 * 18 17 16 20 20 C 1.38807 * 120.00484 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99580 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00773 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.46869 * 59.99590 * 22 20 18 24 24 H 1.48499 * 109.47222 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.46761 * 300.00172 * 22 20 18 26 26 C 1.53775 * 87.11158 * 25.36556 * 16 15 14 27 27 N 1.31132 * 106.89433 * 359.97438 * 6 5 4 28 28 H 1.08999 * 109.47388 * 300.00274 * 1 2 3 29 29 H 1.08999 * 109.46958 * 60.00758 * 1 2 3 30 30 H 1.09004 * 109.46981 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47388 * 239.99726 * 2 1 3 32 32 H 1.09011 * 109.47111 * 119.99609 * 2 1 3 33 33 H 1.08994 * 109.47064 * 29.97104 * 7 6 5 34 34 H 1.09000 * 109.47579 * 149.97736 * 7 6 5 35 35 H 1.09005 * 109.46732 * 299.99923 * 9 8 7 36 36 H 1.09004 * 109.47003 * 59.99657 * 9 8 7 37 37 H 0.97000 * 119.99764 * 0.02562 * 12 10 9 38 38 H 1.09001 * 109.46981 * 299.99941 * 13 12 10 39 39 H 1.08992 * 109.47050 * 60.00285 * 13 12 10 40 40 H 1.08998 * 112.85478 * 45.33269 * 14 13 12 41 41 H 1.08993 * 113.61775 * 334.57369 * 15 14 13 42 42 H 1.09005 * 113.60887 * 105.47481 * 15 14 13 43 43 H 1.08996 * 113.53506 * 270.81312 * 16 15 14 44 44 H 0.97000 * 119.99625 * 287.40020 * 17 16 15 45 45 H 0.96996 * 120.00100 * 180.02562 * 21 20 18 46 46 H 1.09000 * 113.61594 * 220.09243 * 26 16 15 47 47 H 1.08996 * 113.61335 * 89.18403 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2891 2.1458 1.0475 5 8 2.6825 3.2431 0.7124 6 6 2.7156 3.3248 -0.6211 7 6 3.1449 4.5169 -1.4369 8 8 2.0120 5.3477 -1.6989 9 6 2.3114 6.5123 -2.4709 10 6 1.0511 7.3100 -2.6863 11 8 -0.0002 6.9193 -2.2245 12 7 1.0921 8.4575 -3.3920 13 6 -0.1330 9.2331 -3.6009 14 6 0.1876 10.4800 -4.4276 15 6 0.6675 11.6723 -3.5831 16 6 -0.1843 12.5644 -4.5044 17 7 -0.8953 13.6329 -3.7979 18 6 -0.4813 14.9319 -3.9260 19 1 0.3696 15.1687 -4.5476 20 6 -1.1552 15.9444 -3.2571 21 7 -2.1919 15.6558 -2.4992 22 14 -0.5901 17.7163 -3.4313 23 1 -0.6608 18.1203 -4.8585 24 1 -1.4695 18.5981 -2.6225 25 1 0.8097 17.8389 -2.9509 26 6 -1.0504 11.3232 -4.7761 27 7 2.3042 2.1689 -1.0840 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8922 5.0856 -0.8837 34 1 3.5720 4.1769 -2.3803 35 1 3.0417 7.1226 -1.9395 36 1 2.7210 6.2132 -3.4358 37 1 1.9328 8.7697 -3.7617 38 1 -0.8632 8.6230 -4.1325 39 1 -0.5427 9.5319 -2.6361 40 1 0.8262 10.2669 -5.2848 41 1 0.3151 11.6471 -2.5520 42 1 1.7386 11.8594 -3.6610 43 1 0.3534 12.9224 -5.3823 44 1 -1.6593 13.4202 -3.2394 45 1 -2.6631 16.3633 -2.0321 46 1 -1.3643 11.2288 -5.8156 47 1 -1.8733 11.2023 -4.0717 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100848506.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:54 Heat of formation + Delta-G solvation = 18.336143 kcal Electronic energy + Delta-G solvation = -27431.908110 eV Core-core repulsion = 23233.512101 eV Total energy + Delta-G solvation = -4198.396009 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -46.03378 -40.07255 -38.75165 -38.00420 -36.79511 -34.75213 -34.31271 -33.32648 -32.14434 -30.51381 -29.58686 -27.91170 -26.23907 -25.54489 -25.12195 -23.81712 -23.64137 -21.64266 -21.12196 -20.86077 -19.12599 -18.65290 -18.14918 -17.43359 -17.24791 -17.04807 -16.82009 -15.93358 -15.77810 -15.35152 -15.03707 -14.84635 -14.66275 -14.51258 -13.86210 -13.66792 -13.56138 -13.43666 -13.10340 -12.91670 -12.64212 -12.52601 -12.19975 -11.93365 -11.86949 -11.84990 -11.74464 -11.43401 -11.42050 -11.25353 -10.84266 -10.56153 -10.46415 -10.45440 -10.28561 -10.18694 -9.88852 -9.85843 -9.51573 -9.11923 -8.88382 -6.98435 -5.79756 -3.08959 0.56259 1.67445 2.14584 2.43595 2.67723 3.10010 3.41853 3.46338 3.47696 3.52410 3.73884 4.24467 4.39959 4.47975 4.56674 4.58337 4.63283 4.66742 4.69654 4.74617 4.88807 4.93507 4.96633 5.19025 5.28749 5.30505 5.42529 5.44430 5.46461 5.54283 5.70134 5.78114 5.80517 5.89523 6.06769 6.17152 6.23306 6.28449 6.32773 6.40391 6.55709 6.79169 7.08266 7.33630 7.66572 7.70719 8.06253 8.38677 9.49635 10.07842 10.41892 11.42468 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.025961 B = 0.001395 C = 0.001391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.278731 B =20061.093598 C =20125.894239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.032 4.032 3 C 0.170 3.830 4 N -0.377 5.377 5 O 0.090 5.910 6 C 0.184 3.816 7 C 0.157 3.843 8 O -0.356 6.356 9 C 0.046 3.954 10 C 0.510 3.490 11 O -0.520 6.520 12 N -0.722 5.722 13 C 0.133 3.867 14 C -0.127 4.127 15 C -0.162 4.162 16 C 0.166 3.834 17 N -0.712 5.712 18 C -0.247 4.247 19 H 0.071 0.929 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.142 4.142 27 N -0.460 5.460 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.401 0.599 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.054 0.946 43 H 0.075 0.925 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.062 0.938 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.286 -29.483 -0.225 32.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.071 4.071 3 C -0.102 4.102 4 N -0.083 5.083 5 O 0.030 5.970 6 C -0.037 4.037 7 C 0.078 3.922 8 O -0.273 6.273 9 C -0.034 4.034 10 C 0.294 3.706 11 O -0.394 6.394 12 N -0.375 5.375 13 C 0.011 3.989 14 C -0.146 4.146 15 C -0.203 4.203 16 C 0.053 3.947 17 N -0.350 5.350 18 C -0.378 4.378 19 H 0.089 0.911 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.738 3.262 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.182 4.182 27 N -0.195 5.195 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.116 0.884 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.121 0.879 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.235 0.765 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.093 0.907 44 H 0.220 0.780 45 H 0.066 0.934 46 H 0.080 0.920 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 13.146 -30.177 0.670 32.923 hybrid contribution 0.758 1.313 -0.127 1.521 sum 13.904 -28.864 0.543 32.043 Atomic orbital electron populations 1.21755 0.93038 1.02963 1.03013 1.19970 0.97067 0.85322 1.04754 1.25955 1.00413 1.00598 0.83269 1.74664 1.16810 0.92907 1.23872 1.85315 1.59962 1.27263 1.24507 1.28128 0.97163 0.96192 0.82244 1.20587 0.88644 0.85549 0.97421 1.88071 1.30734 1.34918 1.73533 1.22307 0.96592 0.87389 0.97084 1.20073 0.90086 0.81457 0.79003 1.90775 1.31622 1.68840 1.48188 1.45901 1.12823 1.23413 1.55380 1.21472 0.85630 0.91447 1.00395 1.22644 1.00304 0.92755 0.98914 1.23984 1.00177 0.96027 1.00080 1.21546 0.92383 0.86696 0.94034 1.42403 1.35276 1.02406 1.54940 1.19256 1.10697 0.83827 1.23995 0.91145 1.24771 0.98015 0.98111 0.99919 1.69651 1.21935 1.32042 1.34333 0.86266 0.77705 0.84796 0.77391 1.21222 1.21668 1.21249 1.23449 0.96599 0.97095 1.01084 1.71878 1.15917 1.02195 1.29510 0.92206 0.91770 0.90878 0.88450 0.88960 0.88700 0.87937 0.89253 0.89413 0.76483 0.91617 0.91046 0.89312 0.90338 0.92741 0.90682 0.78048 0.93372 0.91952 0.90076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.89 37.16 0.37 -0.57 16 2 C -0.03 -0.21 6.56 -27.88 -0.18 -0.39 16 3 C 0.17 1.72 7.47 -156.38 -1.17 0.55 16 4 N -0.38 -4.25 12.16 30.90 0.38 -3.87 16 5 O 0.09 0.95 11.31 18.10 0.20 1.16 16 6 C 0.18 1.71 8.14 -13.06 -0.11 1.60 16 7 C 0.16 0.90 6.56 36.00 0.24 1.13 16 8 O -0.36 -3.42 9.86 -55.14 -0.54 -3.97 16 9 C 0.05 0.31 6.42 36.00 0.23 0.54 16 10 C 0.51 5.82 7.91 -10.99 -0.09 5.73 16 11 O -0.52 -8.80 16.50 -14.36 -0.24 -9.04 16 12 N -0.72 -6.98 5.56 -60.30 -0.33 -7.32 16 13 C 0.13 1.63 5.50 -4.04 -0.02 1.61 16 14 C -0.13 -1.56 3.75 -89.80 -0.34 -1.90 16 15 C -0.16 -2.51 7.45 -25.83 -0.19 -2.70 16 16 C 0.17 3.09 4.48 -67.03 -0.30 2.79 16 17 N -0.71 -17.47 5.41 -52.55 -0.28 -17.76 16 18 C -0.25 -6.73 9.97 -15.06 -0.15 -6.88 16 19 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -27.96 13.06 55.49 0.72 -27.23 16 22 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 C -0.14 -2.17 7.40 -25.92 -0.19 -2.37 16 27 N -0.46 -4.87 11.55 -9.87 -0.11 -4.99 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.48 8.14 -51.92 -0.42 0.05 16 33 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.40 2.56 8.47 -40.82 -0.35 2.21 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.07 1.03 7.88 -51.93 -0.41 0.62 16 40 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.08 1.37 7.92 -51.93 -0.41 0.96 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 44 H 0.39 10.12 7.92 -40.82 -0.32 9.80 16 45 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.08 1.32 8.08 -51.93 -0.42 0.90 16 LS Contribution 403.61 15.07 6.08 6.08 Total: -1.00 -36.93 403.61 -8.52 -45.45 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -7.37 Total: 5.74 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -2.00 Total: -1.29 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: 0.37 Total: -61.16 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -0.58 Total: -11.85 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.93 -8.52 -45.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100848506.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.783 kcal (2) G-P(sol) polarization free energy of solvation -36.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds