Wall clock time and date at job start Tue Mar 31 2020 20:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47042 * 2 1 4 4 N 1.29954 * 126.28649 * 90.02411 * 3 2 1 5 5 O 1.21294 * 110.24985 * 179.73386 * 4 3 2 6 6 C 1.33643 * 109.81343 * 359.97438 * 5 4 3 7 7 C 1.50698 * 126.55336 * 180.02562 * 6 5 4 8 8 O 1.42908 * 109.47024 * 269.97484 * 7 6 5 9 9 C 1.42897 * 114.00164 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47459 * 179.97438 * 9 8 7 11 11 O 1.21287 * 119.99598 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00360 * 179.97438 * 10 9 8 13 13 C 1.46501 * 119.99938 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46685 * 180.02562 * 13 12 10 15 15 C 1.53785 * 113.60957 * 274.13105 * 14 13 12 16 16 C 1.53955 * 87.01907 * 220.05154 * 15 14 13 17 17 N 1.46502 * 113.74027 * 139.94768 * 16 15 14 18 18 C 1.36931 * 120.00043 * 107.40442 * 17 16 15 19 19 H 1.08008 * 120.00234 * 359.97438 * 18 17 16 20 20 C 1.38807 * 120.00484 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99580 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00773 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.46869 * 59.99590 * 22 20 18 24 24 H 1.48499 * 109.47222 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.46761 * 300.00172 * 22 20 18 26 26 C 1.53775 * 87.11158 * 25.36556 * 16 15 14 27 27 N 1.31132 * 106.89433 * 359.97438 * 6 5 4 28 28 H 1.08999 * 109.47388 * 300.00274 * 1 2 3 29 29 H 1.08999 * 109.46958 * 60.00758 * 1 2 3 30 30 H 1.09004 * 109.46981 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47388 * 239.99726 * 2 1 3 32 32 H 1.09011 * 109.47111 * 119.99609 * 2 1 3 33 33 H 1.08994 * 109.47064 * 29.97104 * 7 6 5 34 34 H 1.09000 * 109.47579 * 149.97736 * 7 6 5 35 35 H 1.09005 * 109.46732 * 299.99923 * 9 8 7 36 36 H 1.09004 * 109.47003 * 59.99657 * 9 8 7 37 37 H 0.97000 * 119.99764 * 0.02562 * 12 10 9 38 38 H 1.09001 * 109.46981 * 299.99941 * 13 12 10 39 39 H 1.08992 * 109.47050 * 60.00285 * 13 12 10 40 40 H 1.08998 * 112.85478 * 45.33269 * 14 13 12 41 41 H 1.08993 * 113.61775 * 334.57369 * 15 14 13 42 42 H 1.09005 * 113.60887 * 105.47481 * 15 14 13 43 43 H 1.08996 * 113.53506 * 270.81312 * 16 15 14 44 44 H 0.97000 * 119.99625 * 287.40020 * 17 16 15 45 45 H 0.96996 * 120.00100 * 180.02562 * 21 20 18 46 46 H 1.09000 * 113.61594 * 220.09243 * 26 16 15 47 47 H 1.08996 * 113.61335 * 89.18403 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2891 2.1458 1.0475 5 8 2.6825 3.2431 0.7124 6 6 2.7156 3.3248 -0.6211 7 6 3.1449 4.5169 -1.4369 8 8 2.0120 5.3477 -1.6989 9 6 2.3114 6.5123 -2.4709 10 6 1.0511 7.3100 -2.6863 11 8 -0.0002 6.9193 -2.2245 12 7 1.0921 8.4575 -3.3920 13 6 -0.1330 9.2331 -3.6009 14 6 0.1876 10.4800 -4.4276 15 6 0.6675 11.6723 -3.5831 16 6 -0.1843 12.5644 -4.5044 17 7 -0.8953 13.6329 -3.7979 18 6 -0.4813 14.9319 -3.9260 19 1 0.3696 15.1687 -4.5476 20 6 -1.1552 15.9444 -3.2571 21 7 -2.1919 15.6558 -2.4992 22 14 -0.5901 17.7163 -3.4313 23 1 -0.6608 18.1203 -4.8585 24 1 -1.4695 18.5981 -2.6225 25 1 0.8097 17.8389 -2.9509 26 6 -1.0504 11.3232 -4.7761 27 7 2.3042 2.1689 -1.0840 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8922 5.0856 -0.8837 34 1 3.5720 4.1769 -2.3803 35 1 3.0417 7.1226 -1.9395 36 1 2.7210 6.2132 -3.4358 37 1 1.9328 8.7697 -3.7617 38 1 -0.8632 8.6230 -4.1325 39 1 -0.5427 9.5319 -2.6361 40 1 0.8262 10.2669 -5.2848 41 1 0.3151 11.6471 -2.5520 42 1 1.7386 11.8594 -3.6610 43 1 0.3534 12.9224 -5.3823 44 1 -1.6593 13.4202 -3.2394 45 1 -2.6631 16.3633 -2.0321 46 1 -1.3643 11.2288 -5.8156 47 1 -1.8733 11.2023 -4.0717 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100848506.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:53 Heat of formation + Delta-G solvation = -10.567309 kcal Electronic energy + Delta-G solvation = -27433.161458 eV Core-core repulsion = 23233.512101 eV Total energy + Delta-G solvation = -4199.649356 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.75511 -40.96331 -39.87130 -38.77349 -37.47259 -36.03149 -34.99933 -34.93934 -32.75608 -32.23266 -30.46742 -28.75190 -27.16070 -26.43029 -26.17125 -25.62869 -24.28613 -22.46152 -22.24090 -21.74922 -20.46245 -19.37488 -19.07304 -18.80893 -18.17493 -17.91038 -17.37195 -16.86056 -16.67928 -16.41522 -16.14429 -15.86801 -15.64219 -15.42609 -15.10936 -14.98916 -14.47374 -14.44833 -14.06969 -13.82583 -13.41882 -13.22431 -13.20082 -13.11235 -12.94546 -12.88804 -12.70409 -12.60070 -12.53087 -12.36668 -12.23268 -12.05866 -12.04116 -11.56885 -11.52534 -11.19407 -11.07649 -10.89136 -10.83723 -10.73828 -10.07315 -8.95841 -7.92879 -5.21306 -0.12217 0.98209 1.48585 1.51573 1.55908 1.57731 1.60861 1.98227 2.50030 2.58432 2.90984 3.15826 3.39251 3.66115 3.76316 3.78603 3.84494 3.97530 4.09320 4.13644 4.18301 4.26320 4.28728 4.29286 4.38276 4.39121 4.40768 4.45453 4.58658 4.69104 4.79781 4.82719 4.87740 4.96604 5.00434 5.02129 5.08383 5.18975 5.25884 5.38243 5.44855 5.54826 5.76510 5.81129 6.29158 6.60670 7.00022 7.28681 7.34601 8.13704 8.34916 9.30502 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.025961 B = 0.001395 C = 0.001391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.278731 B =20061.093598 C =20125.894239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.033 4.033 3 C 0.164 3.836 4 N -0.403 5.403 5 O 0.076 5.924 6 C 0.185 3.815 7 C 0.155 3.845 8 O -0.399 6.399 9 C 0.052 3.948 10 C 0.501 3.499 11 O -0.587 6.587 12 N -0.706 5.706 13 C 0.138 3.862 14 C -0.092 4.092 15 C -0.152 4.152 16 C 0.141 3.859 17 N -0.731 5.731 18 C -0.243 4.243 19 H 0.081 0.919 20 C -0.080 4.080 21 N -0.973 5.973 22 Si 0.974 3.026 23 H -0.276 1.276 24 H -0.299 1.299 25 H -0.277 1.277 26 C -0.140 4.140 27 N -0.484 5.484 28 H 0.045 0.955 29 H 0.048 0.952 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.422 0.578 38 H 0.062 0.938 39 H 0.042 0.958 40 H 0.128 0.872 41 H 0.052 0.948 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.371 0.629 45 H 0.249 0.751 46 H 0.078 0.922 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.432 -30.458 -2.133 35.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.072 4.072 3 C -0.108 4.108 4 N -0.112 5.112 5 O 0.019 5.981 6 C -0.037 4.037 7 C 0.078 3.922 8 O -0.318 6.318 9 C -0.027 4.027 10 C 0.288 3.712 11 O -0.467 6.467 12 N -0.360 5.360 13 C 0.014 3.986 14 C -0.111 4.111 15 C -0.193 4.193 16 C 0.032 3.968 17 N -0.368 5.368 18 C -0.375 4.375 19 H 0.099 0.901 20 C -0.271 4.271 21 N -0.624 5.624 22 Si 0.802 3.198 23 H -0.202 1.202 24 H -0.226 1.226 25 H -0.203 1.203 26 C -0.180 4.180 27 N -0.219 5.219 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.116 0.884 31 H 0.131 0.869 32 H 0.125 0.875 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.148 0.852 37 H 0.260 0.740 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.146 0.854 41 H 0.071 0.929 42 H 0.092 0.908 43 H 0.101 0.899 44 H 0.202 0.798 45 H 0.058 0.942 46 H 0.097 0.903 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 16.395 -31.157 -1.303 35.232 hybrid contribution -0.198 1.551 0.402 1.615 sum 16.197 -29.606 -0.901 33.759 Atomic orbital electron populations 1.21733 0.92970 1.04143 1.01526 1.20179 0.96998 0.83791 1.06227 1.26603 0.99582 1.01683 0.82966 1.74644 1.18266 0.93488 1.24833 1.85270 1.60340 1.27168 1.25348 1.28998 0.95678 0.96996 0.81979 1.21059 0.87932 0.84460 0.98795 1.87993 1.33163 1.36206 1.74417 1.22470 0.94034 0.86668 0.99508 1.21071 0.91022 0.81504 0.77574 1.90751 1.34490 1.70509 1.50901 1.45709 1.12785 1.22731 1.54817 1.21195 0.86872 0.91660 0.98848 1.22466 0.98442 0.91159 0.98992 1.23737 1.00583 0.96537 0.98431 1.22023 0.93745 0.86436 0.94616 1.42644 1.35534 1.03037 1.55625 1.19724 1.10109 0.85125 1.22575 0.90127 1.25601 0.98687 1.02252 1.00609 1.69826 1.23697 1.32731 1.36151 0.85208 0.77250 0.79834 0.77463 1.20213 1.22591 1.20267 1.23345 0.96989 0.95980 1.01664 1.71896 1.16989 1.03063 1.29987 0.93599 0.93266 0.88355 0.86873 0.87521 0.84996 0.84959 0.85476 0.85217 0.74030 0.91964 0.93962 0.85441 0.92889 0.90813 0.89933 0.79784 0.94186 0.90331 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.89 71.98 0.71 -1.07 16 2 C -0.03 -0.41 6.56 29.85 0.20 -0.22 16 3 C 0.16 3.30 7.47 138.46 1.03 4.34 16 4 N -0.40 -9.25 12.16 -60.33 -0.73 -9.98 16 5 O 0.08 1.61 11.31 74.84 0.85 2.46 16 6 C 0.18 3.27 8.14 88.38 0.72 3.99 16 7 C 0.15 1.33 6.56 71.24 0.47 1.79 16 8 O -0.40 -6.84 9.86 -129.94 -1.28 -8.12 16 9 C 0.05 0.50 6.42 71.23 0.46 0.96 16 10 C 0.50 10.58 7.91 87.66 0.69 11.27 16 11 O -0.59 -20.21 16.50 15.99 0.26 -19.95 16 12 N -0.71 -11.78 5.56 -463.06 -2.57 -14.36 16 13 C 0.14 3.21 5.50 86.38 0.47 3.69 16 14 C -0.09 -2.01 3.75 -10.26 -0.04 -2.05 16 15 C -0.15 -4.47 7.45 31.18 0.23 -4.24 16 16 C 0.14 5.12 4.48 45.57 0.20 5.32 16 17 N -0.73 -36.34 5.41 -320.18 -1.73 -38.08 16 18 C -0.24 -13.30 9.97 84.03 0.84 -12.46 16 19 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 20 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 21 N -0.97 -60.11 13.06 21.65 0.28 -59.83 16 22 Si 0.97 45.68 29.55 68.60 2.03 47.71 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 25 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 26 C -0.14 -4.12 7.40 31.12 0.23 -3.89 16 27 N -0.48 -10.03 11.55 -303.20 -3.50 -13.53 16 28 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.13 0.11 8.14 -2.39 -0.02 0.09 16 34 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.13 0.29 8.14 -2.38 -0.02 0.27 16 36 H 0.13 0.19 8.14 -2.38 -0.02 0.17 16 37 H 0.42 3.50 8.47 -92.71 -0.79 2.71 16 38 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.04 1.25 7.88 -2.39 -0.02 1.23 16 40 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.05 1.85 7.92 -2.39 -0.02 1.83 16 42 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 43 H 0.08 2.86 8.10 -2.39 -0.02 2.84 16 44 H 0.37 20.22 7.92 -92.71 -0.73 19.49 16 45 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 46 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.06 2.09 8.08 -2.39 -0.02 2.07 16 Total: -1.00 -86.38 403.61 -0.24 -86.61 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: -0.52 Total: 23.73 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 6.69 Total: 3.33 kcal Atomic # 7 Polarization: -127.52 SS G_CDS: -8.26 Total: -135.78 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.17 Total: -25.61 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -86.38 -0.24 -86.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100848506.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.047 kcal (2) G-P(sol) polarization free energy of solvation -86.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds