Wall clock time and date at job start Tue Mar 31 2020 21:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47396 * 2 1 4 4 C 1.50696 * 109.46966 * 239.99760 * 2 1 3 5 5 N 1.34781 * 120.00148 * 60.00277 * 4 2 1 6 6 O 1.21288 * 120.00545 * 239.99953 * 4 2 1 7 7 C 1.50707 * 109.47042 * 120.00117 * 2 1 3 8 8 O 1.21280 * 119.99920 * 120.00088 * 7 2 1 9 9 N 1.34772 * 119.99774 * 299.99675 * 7 2 1 10 10 C 1.46495 * 119.99836 * 180.02562 * 9 7 2 11 11 H 1.08997 * 115.49771 * 9.61367 * 10 9 7 12 12 C 1.53007 * 117.44543 * 224.22644 * 10 9 7 13 13 H 1.09001 * 119.52175 * 4.09242 * 12 10 9 14 14 C 1.54374 * 118.12951 * 160.68211 * 12 10 9 15 15 N 1.48562 * 104.59366 * 87.23112 * 14 12 10 16 16 C 1.46901 * 111.00245 * 200.95798 * 15 14 12 17 17 C 1.50702 * 109.46920 * 285.42065 * 16 15 14 18 18 O 1.21294 * 120.00254 * 359.97438 * 17 16 15 19 19 N 1.34778 * 119.99754 * 179.97438 * 17 16 15 20 20 C 1.37100 * 120.00054 * 180.02562 * 19 17 16 21 21 H 1.07998 * 119.99767 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99801 * 180.02562 * 20 19 17 23 23 N 1.31410 * 120.00428 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99578 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47516 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46974 * 120.00081 * 24 22 20 27 27 H 1.48496 * 109.47189 * 239.99917 * 24 22 20 28 28 C 1.48556 * 104.22469 * 320.51864 * 15 14 12 29 29 C 1.53006 * 117.44571 * 155.00147 * 10 9 7 30 30 H 1.08998 * 119.52288 * 354.35165 * 29 10 9 31 31 H 1.09004 * 109.46862 * 300.00084 * 1 2 3 32 32 H 1.08995 * 109.47167 * 59.99762 * 1 2 3 33 33 H 1.08993 * 109.47175 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47570 * 180.02562 * 3 2 1 35 35 H 1.09008 * 109.46867 * 300.00251 * 3 2 1 36 36 H 1.09006 * 109.47395 * 59.99618 * 3 2 1 37 37 H 0.97008 * 119.99616 * 359.97438 * 5 4 2 38 38 H 0.96993 * 120.00189 * 180.02562 * 5 4 2 39 39 H 0.97006 * 120.00279 * 359.97438 * 9 7 2 40 40 H 1.09003 * 110.41466 * 328.45114 * 14 12 10 41 41 H 1.09004 * 110.51377 * 206.05786 * 14 12 10 42 42 H 1.08995 * 109.46762 * 45.41886 * 16 15 14 43 43 H 1.08994 * 109.47249 * 165.41837 * 16 15 14 44 44 H 0.97004 * 120.00253 * 0.02562 * 19 17 16 45 45 H 0.97000 * 119.99898 * 179.97438 * 23 22 20 46 46 H 1.09003 * 110.40681 * 280.70319 * 28 15 14 47 47 H 1.08995 * 110.41457 * 158.26025 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2304 5 7 1.7067 -0.2500 -2.4546 6 8 2.7296 -1.6966 -1.1192 7 6 2.0323 -0.7105 1.2305 8 8 2.7296 -1.6965 1.1192 9 7 1.7068 -0.2500 2.4545 10 6 2.1955 -0.9402 3.6507 11 1 2.9436 -1.7130 3.4737 12 6 1.1989 -1.1710 4.7884 13 1 0.1560 -0.8833 4.6555 14 6 1.5271 -2.2581 5.8342 15 7 2.3522 -1.5600 6.8535 16 6 3.1470 -2.5179 7.6336 17 6 2.2500 -3.2422 8.6041 18 8 1.0652 -2.9853 8.6425 19 7 2.7643 -4.1754 9.4294 20 6 1.9482 -4.8348 10.3119 21 1 0.8931 -4.6066 10.3455 22 6 2.4785 -5.7965 11.1631 23 7 3.7624 -6.0738 11.1226 24 14 1.3666 -6.6943 12.3661 25 1 -0.0262 -6.2022 12.2146 26 1 1.4092 -8.1521 12.0861 27 1 1.8329 -6.4429 13.7533 28 6 3.2297 -0.6616 6.0600 29 6 2.3189 -0.1208 4.9369 30 1 2.1346 0.9532 4.9093 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 1.1488 0.5385 -2.5436 38 1 2.0297 -0.7075 -3.2465 39 1 1.1494 0.5390 2.5436 40 1 2.0945 -3.0680 5.3756 41 1 0.6123 -2.6435 6.2846 42 1 3.6107 -3.2386 6.9602 43 1 3.9218 -1.9841 8.1839 44 1 3.7119 -4.3807 9.3990 45 1 4.1326 -6.7449 11.7171 46 1 4.0636 -1.2217 5.6366 47 1 3.5959 0.1568 6.6797 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114431014.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:41 Heat of formation + Delta-G solvation = -64.487910 kcal Electronic energy + Delta-G solvation = -28977.484768 eV Core-core repulsion = 24775.497239 eV Total energy + Delta-G solvation = -4201.987529 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.17766 -40.05001 -38.62864 -37.82654 -35.64512 -35.00430 -33.82332 -33.53119 -32.22414 -31.14596 -28.30891 -28.08066 -27.57256 -25.05901 -24.58735 -23.10597 -21.63529 -21.00719 -20.28883 -19.79702 -19.08025 -18.27660 -17.79588 -17.23559 -16.75664 -16.21903 -15.85634 -15.69402 -15.17942 -14.92809 -14.59167 -14.51162 -14.47666 -14.43062 -13.70572 -13.54578 -13.39422 -13.15766 -12.93101 -12.87843 -12.78271 -12.73293 -12.45008 -12.03339 -11.92135 -11.87004 -11.45917 -11.39334 -11.25119 -11.02514 -10.74403 -10.38013 -10.31283 -10.18900 -10.07534 -10.03826 -9.61049 -9.46369 -8.91332 -8.46908 -7.98193 -7.90398 -6.37372 -3.77979 2.19972 2.41486 2.48243 3.11648 3.19465 3.29631 3.36912 3.59774 3.92991 3.96837 4.07467 4.10316 4.27963 4.33220 4.46949 4.57871 4.62801 4.82575 4.83392 5.00061 5.01858 5.03213 5.03243 5.22590 5.29144 5.29931 5.39931 5.48419 5.56072 5.65390 5.73606 5.81919 5.87706 6.03594 6.03927 6.29828 6.32047 6.38649 6.41398 6.87407 7.08342 7.17818 7.22516 7.59532 7.87091 8.03578 8.10991 8.66726 9.22858 9.59520 10.11564 10.80608 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.026273 B = 0.001836 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.465163 B =15247.438778 C =15506.287886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 C -0.140 4.140 4 C 0.524 3.476 5 N -0.857 5.857 6 O -0.493 6.493 7 C 0.524 3.476 8 O -0.488 6.488 9 N -0.699 5.699 10 C 0.106 3.894 11 H 0.133 0.867 12 C -0.161 4.161 13 H 0.118 0.882 14 C 0.068 3.932 15 N -0.483 5.483 16 C 0.033 3.967 17 C 0.446 3.554 18 O -0.577 6.577 19 N -0.566 5.566 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.060 3.940 29 C -0.167 4.167 30 H 0.119 0.881 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.398 0.602 38 H 0.404 0.596 39 H 0.399 0.601 40 H 0.043 0.957 41 H 0.103 0.897 42 H 0.052 0.948 43 H 0.090 0.910 44 H 0.392 0.608 45 H 0.270 0.730 46 H 0.046 0.954 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.648 18.890 -25.663 32.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 C -0.197 4.197 4 C 0.306 3.694 5 N -0.423 5.423 6 O -0.364 6.364 7 C 0.307 3.693 8 O -0.359 6.359 9 N -0.350 5.350 10 C 0.000 4.000 11 H 0.151 0.849 12 C -0.181 4.181 13 H 0.136 0.864 14 C -0.060 4.060 15 N -0.207 5.207 16 C -0.098 4.098 17 C 0.232 3.768 18 O -0.460 6.460 19 N -0.204 5.204 20 C -0.426 4.426 21 H 0.121 0.879 22 C -0.181 4.181 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.068 4.068 29 C -0.187 4.187 30 H 0.136 0.864 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.226 0.774 38 H 0.235 0.765 39 H 0.234 0.766 40 H 0.061 0.939 41 H 0.121 0.879 42 H 0.070 0.930 43 H 0.108 0.892 44 H 0.225 0.775 45 H 0.080 0.920 46 H 0.064 0.936 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.674 17.809 -24.939 30.864 hybrid contribution 0.154 -0.334 -0.201 0.419 sum -3.521 17.474 -25.140 30.818 Atomic orbital electron populations 1.21872 0.90226 1.03935 1.03788 1.20888 0.98978 0.97778 0.93387 1.21869 1.02564 0.91530 1.03787 1.19852 0.80566 0.84564 0.84465 1.43806 1.56634 1.34026 1.07801 1.90929 1.35131 1.24486 1.85831 1.19817 0.80988 0.84842 0.83619 1.90879 1.35075 1.24337 1.85570 1.45202 1.53794 1.31584 1.04378 1.21793 0.99944 0.98368 0.79927 0.84907 1.24001 0.96292 0.99179 0.98675 0.86406 1.22658 1.00038 0.93416 0.89841 1.65289 1.18428 1.16931 1.20009 1.22065 0.95969 0.94891 0.96907 1.19686 0.88918 0.83519 0.84721 1.90508 1.16270 1.67369 1.71893 1.41869 1.11219 1.34096 1.33169 1.19743 0.93774 1.16262 1.12853 0.87883 1.25258 0.96296 0.97775 0.98739 1.69622 1.11492 1.33784 1.39509 0.85804 0.80087 0.78851 0.79620 1.19246 1.20820 1.20787 1.22662 0.93984 0.97270 0.92911 1.23816 1.01319 0.97676 0.95888 0.86352 0.90606 0.90755 0.91136 0.91217 0.90765 0.90624 0.77357 0.76513 0.76613 0.93879 0.87910 0.92978 0.89163 0.77513 0.91976 0.93594 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.58 8.27 37.16 0.31 -0.27 16 2 C -0.10 -0.71 0.72 -156.81 -0.11 -0.83 16 3 C -0.14 -0.52 8.27 37.15 0.31 -0.22 16 4 C 0.52 4.89 6.74 -10.99 -0.07 4.82 16 5 N -0.86 -3.72 8.66 31.22 0.27 -3.45 16 6 O -0.49 -7.63 15.02 -18.97 -0.28 -7.92 16 7 C 0.52 5.86 6.47 -10.98 -0.07 5.79 16 8 O -0.49 -8.21 13.75 -18.96 -0.26 -8.47 16 9 N -0.70 -6.20 5.35 -53.80 -0.29 -6.49 16 10 C 0.11 1.21 5.98 -67.93 -0.41 0.80 16 11 H 0.13 1.84 7.40 -51.93 -0.38 1.46 16 12 C -0.16 -2.00 7.05 -89.24 -0.63 -2.63 16 13 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16 14 C 0.07 1.11 5.73 -2.18 -0.01 1.10 16 15 N -0.48 -8.19 4.98 -231.41 -1.15 -9.34 16 16 C 0.03 0.61 5.32 -4.97 -0.03 0.59 16 17 C 0.45 10.76 7.63 -10.98 -0.08 10.68 16 18 O -0.58 -15.83 14.80 5.55 0.08 -15.75 16 19 N -0.57 -14.65 5.29 -10.96 -0.06 -14.70 16 20 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 21 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 22 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.99 13.05 55.50 0.72 -24.26 16 24 Si 0.93 21.40 29.55 -169.99 -5.02 16.37 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 C 0.06 0.77 6.26 -2.18 -0.01 0.76 16 29 C -0.17 -1.82 7.05 -89.23 -0.63 -2.45 16 30 H 0.12 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.07 0.20 7.57 -51.93 -0.39 -0.19 16 32 H 0.07 0.11 7.56 -51.93 -0.39 -0.28 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.09 7.57 -51.92 -0.39 -0.30 16 36 H 0.07 0.17 7.56 -51.93 -0.39 -0.22 16 37 H 0.40 0.34 7.67 -40.82 -0.31 0.02 16 38 H 0.40 1.53 8.93 -40.82 -0.36 1.16 16 39 H 0.40 2.21 7.66 -40.82 -0.31 1.89 16 40 H 0.04 0.70 7.75 -51.93 -0.40 0.30 16 41 H 0.10 1.95 7.23 -51.93 -0.38 1.57 16 42 H 0.05 0.89 7.77 -51.93 -0.40 0.48 16 43 H 0.09 1.49 8.08 -51.93 -0.42 1.07 16 44 H 0.39 9.70 7.90 -40.82 -0.32 9.38 16 45 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 46 H 0.05 0.57 8.00 -51.93 -0.42 0.16 16 47 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 387.22 15.07 5.84 5.84 Total: -1.00 -39.13 387.22 -8.75 -47.88 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -6.91 Total: 10.26 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: -1.68 Total: 10.04 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: -0.50 Total: -58.25 kcal Atomic # 8 Polarization: -31.68 SS G_CDS: -0.46 Total: -32.14 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -39.13 -8.75 -47.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114431014.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.611 kcal (2) G-P(sol) polarization free energy of solvation -39.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds