Wall clock time and date at job start Tue Mar 31 2020 21:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47396 * 2 1 4 4 C 1.50696 * 109.46966 * 239.99760 * 2 1 3 5 5 N 1.34781 * 120.00148 * 60.00277 * 4 2 1 6 6 O 1.21288 * 120.00545 * 239.99953 * 4 2 1 7 7 C 1.50707 * 109.47042 * 120.00117 * 2 1 3 8 8 O 1.21280 * 119.99920 * 120.00088 * 7 2 1 9 9 N 1.34772 * 119.99774 * 299.99675 * 7 2 1 10 10 C 1.46495 * 119.99836 * 180.02562 * 9 7 2 11 11 H 1.08997 * 115.49771 * 9.61367 * 10 9 7 12 12 C 1.53007 * 117.44543 * 224.22644 * 10 9 7 13 13 H 1.09001 * 119.52175 * 4.09242 * 12 10 9 14 14 C 1.54374 * 118.12951 * 160.68211 * 12 10 9 15 15 N 1.48562 * 104.59366 * 87.23112 * 14 12 10 16 16 C 1.46901 * 111.00245 * 200.95798 * 15 14 12 17 17 C 1.50702 * 109.46920 * 285.42065 * 16 15 14 18 18 O 1.21294 * 120.00254 * 359.97438 * 17 16 15 19 19 N 1.34778 * 119.99754 * 179.97438 * 17 16 15 20 20 C 1.37100 * 120.00054 * 180.02562 * 19 17 16 21 21 H 1.07998 * 119.99767 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99801 * 180.02562 * 20 19 17 23 23 N 1.31410 * 120.00428 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99578 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47516 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46974 * 120.00081 * 24 22 20 27 27 H 1.48496 * 109.47189 * 239.99917 * 24 22 20 28 28 C 1.48556 * 104.22469 * 320.51864 * 15 14 12 29 29 C 1.53006 * 117.44571 * 155.00147 * 10 9 7 30 30 H 1.08998 * 119.52288 * 354.35165 * 29 10 9 31 31 H 1.09004 * 109.46862 * 300.00084 * 1 2 3 32 32 H 1.08995 * 109.47167 * 59.99762 * 1 2 3 33 33 H 1.08993 * 109.47175 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47570 * 180.02562 * 3 2 1 35 35 H 1.09008 * 109.46867 * 300.00251 * 3 2 1 36 36 H 1.09006 * 109.47395 * 59.99618 * 3 2 1 37 37 H 0.97008 * 119.99616 * 359.97438 * 5 4 2 38 38 H 0.96993 * 120.00189 * 180.02562 * 5 4 2 39 39 H 0.97006 * 120.00279 * 359.97438 * 9 7 2 40 40 H 1.09003 * 110.41466 * 328.45114 * 14 12 10 41 41 H 1.09004 * 110.51377 * 206.05786 * 14 12 10 42 42 H 1.08995 * 109.46762 * 45.41886 * 16 15 14 43 43 H 1.08994 * 109.47249 * 165.41837 * 16 15 14 44 44 H 0.97004 * 120.00253 * 0.02562 * 19 17 16 45 45 H 0.97000 * 119.99898 * 179.97438 * 23 22 20 46 46 H 1.09003 * 110.40681 * 280.70319 * 28 15 14 47 47 H 1.08995 * 110.41457 * 158.26025 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2304 5 7 1.7067 -0.2500 -2.4546 6 8 2.7296 -1.6966 -1.1192 7 6 2.0323 -0.7105 1.2305 8 8 2.7296 -1.6965 1.1192 9 7 1.7068 -0.2500 2.4545 10 6 2.1955 -0.9402 3.6507 11 1 2.9436 -1.7130 3.4737 12 6 1.1989 -1.1710 4.7884 13 1 0.1560 -0.8833 4.6555 14 6 1.5271 -2.2581 5.8342 15 7 2.3522 -1.5600 6.8535 16 6 3.1470 -2.5179 7.6336 17 6 2.2500 -3.2422 8.6041 18 8 1.0652 -2.9853 8.6425 19 7 2.7643 -4.1754 9.4294 20 6 1.9482 -4.8348 10.3119 21 1 0.8931 -4.6066 10.3455 22 6 2.4785 -5.7965 11.1631 23 7 3.7624 -6.0738 11.1226 24 14 1.3666 -6.6943 12.3661 25 1 -0.0262 -6.2022 12.2146 26 1 1.4092 -8.1521 12.0861 27 1 1.8329 -6.4429 13.7533 28 6 3.2297 -0.6616 6.0600 29 6 2.3189 -0.1208 4.9369 30 1 2.1346 0.9532 4.9093 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 1.1488 0.5385 -2.5436 38 1 2.0297 -0.7075 -3.2465 39 1 1.1494 0.5390 2.5436 40 1 2.0945 -3.0680 5.3756 41 1 0.6123 -2.6435 6.2846 42 1 3.6107 -3.2386 6.9602 43 1 3.9218 -1.9841 8.1839 44 1 3.7119 -4.3807 9.3990 45 1 4.1326 -6.7449 11.7171 46 1 4.0636 -1.2217 5.6366 47 1 3.5959 0.1568 6.6797 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114431014.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:40 Heat of formation + Delta-G solvation = -98.622137 kcal Electronic energy + Delta-G solvation = -28978.964940 eV Core-core repulsion = 24775.497239 eV Total energy + Delta-G solvation = -4203.467700 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.96115 -41.13005 -39.93195 -39.27058 -36.47326 -36.17930 -35.71045 -34.19195 -33.36693 -33.04582 -29.44838 -29.09513 -28.35647 -26.63122 -25.45210 -24.19229 -22.66758 -21.99879 -21.37117 -20.91823 -20.51235 -19.87107 -18.89684 -18.05342 -17.74893 -17.36451 -17.01405 -16.61124 -16.41059 -16.35222 -16.18293 -15.66698 -15.39201 -15.32290 -15.03871 -14.90222 -14.77800 -14.16740 -13.89795 -13.61141 -13.53068 -13.36193 -13.33092 -13.26354 -13.11431 -13.08413 -12.95017 -12.51872 -12.45950 -12.40547 -12.29081 -12.11775 -11.87968 -11.50087 -11.13136 -11.08407 -10.62068 -10.45964 -10.33397 -10.01592 -9.81296 -9.40119 -8.47079 -5.95884 1.35967 1.40657 1.46471 1.55320 1.66569 1.72157 2.04555 2.27843 2.55242 2.64429 2.80986 3.19327 3.30151 3.42734 3.62769 3.67112 3.70004 3.82212 3.90961 4.02039 4.07969 4.24387 4.27406 4.38926 4.48260 4.51817 4.58481 4.66644 4.68334 4.76223 4.77192 4.82040 4.90360 5.09697 5.12924 5.17614 5.21432 5.40414 5.43581 5.78393 5.85111 5.92176 6.05945 6.43605 6.50652 6.59977 7.12428 7.20527 7.41862 7.55657 8.11523 8.70750 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.026273 B = 0.001836 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.465163 B =15247.438778 C =15506.287886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 C -0.138 4.138 4 C 0.515 3.485 5 N -0.830 5.830 6 O -0.567 6.567 7 C 0.515 3.485 8 O -0.554 6.554 9 N -0.678 5.678 10 C 0.110 3.890 11 H 0.103 0.897 12 C -0.167 4.167 13 H 0.134 0.866 14 C 0.066 3.934 15 N -0.501 5.501 16 C 0.045 3.955 17 C 0.443 3.557 18 O -0.614 6.614 19 N -0.576 5.576 20 C -0.331 4.331 21 H 0.079 0.921 22 C -0.016 4.016 23 N -0.922 5.922 24 Si 0.995 3.005 25 H -0.273 1.273 26 H -0.272 1.272 27 H -0.269 1.269 28 C 0.055 3.945 29 C -0.140 4.140 30 H 0.155 0.845 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.419 0.581 38 H 0.408 0.592 39 H 0.420 0.580 40 H 0.032 0.968 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.115 0.885 44 H 0.395 0.605 45 H 0.277 0.723 46 H 0.050 0.950 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.493 22.047 -26.663 34.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.101 4.101 3 C -0.195 4.195 4 C 0.298 3.702 5 N -0.396 5.396 6 O -0.444 6.444 7 C 0.301 3.699 8 O -0.429 6.429 9 N -0.330 5.330 10 C 0.002 3.998 11 H 0.121 0.879 12 C -0.188 4.188 13 H 0.152 0.848 14 C -0.062 4.062 15 N -0.226 5.226 16 C -0.086 4.086 17 C 0.230 3.770 18 O -0.500 6.500 19 N -0.214 5.214 20 C -0.461 4.461 21 H 0.097 0.903 22 C -0.215 4.215 23 N -0.563 5.563 24 Si 0.818 3.182 25 H -0.197 1.197 26 H -0.197 1.197 27 H -0.194 1.194 28 C -0.072 4.072 29 C -0.160 4.160 30 H 0.172 0.828 31 H 0.117 0.883 32 H 0.128 0.872 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.127 0.873 36 H 0.118 0.882 37 H 0.252 0.748 38 H 0.240 0.760 39 H 0.259 0.741 40 H 0.050 0.950 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.133 0.867 44 H 0.229 0.771 45 H 0.087 0.913 46 H 0.068 0.932 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.553 21.066 -25.978 33.755 hybrid contribution 0.407 -1.287 0.044 1.351 sum -4.146 19.779 -25.934 32.878 Atomic orbital electron populations 1.21979 0.87614 1.03335 1.06754 1.20916 1.00702 0.98640 0.89811 1.21976 1.01473 0.89284 1.06778 1.20417 0.79637 0.83804 0.86302 1.43594 1.55440 1.34076 1.06493 1.90906 1.38693 1.27823 1.86980 1.20724 0.79837 0.84147 0.85166 1.90861 1.38121 1.27391 1.86544 1.45004 1.53329 1.31676 1.03022 1.21476 0.98941 0.98429 0.80921 0.87872 1.23851 0.97633 0.98713 0.98562 0.84813 1.22515 0.98349 0.94656 0.90699 1.65249 1.19460 1.16851 1.21008 1.21922 0.95122 0.95388 0.96209 1.20707 0.89179 0.82628 0.84477 1.90475 1.18322 1.68299 1.72914 1.41946 1.11169 1.34710 1.33547 1.19702 0.93293 1.18181 1.14916 0.90286 1.26070 0.97796 0.97831 0.99799 1.69685 1.12560 1.34035 1.40023 0.84848 0.77879 0.77793 0.77666 1.19738 1.19721 1.19449 1.22801 0.93875 0.97011 0.93486 1.23904 0.98966 0.98976 0.94174 0.82786 0.88338 0.87187 0.93515 0.93102 0.87300 0.88205 0.74840 0.76016 0.74097 0.94986 0.91508 0.91717 0.86716 0.77091 0.91333 0.93159 0.87381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.70 8.27 71.98 0.60 -0.11 16 2 C -0.09 -1.12 0.72 -53.67 -0.04 -1.16 16 3 C -0.14 -0.53 8.27 71.98 0.59 0.07 16 4 C 0.52 9.42 6.74 87.66 0.59 10.01 16 5 N -0.83 -5.60 8.66 -173.52 -1.50 -7.10 16 6 O -0.57 -18.69 15.02 20.39 0.31 -18.38 16 7 C 0.52 11.41 6.47 87.66 0.57 11.98 16 8 O -0.55 -19.85 13.75 20.41 0.28 -19.57 16 9 N -0.68 -10.86 5.35 -442.53 -2.37 -13.22 16 10 C 0.11 2.42 5.98 45.00 0.27 2.69 16 11 H 0.10 2.99 7.40 -2.39 -0.02 2.98 16 12 C -0.17 -4.02 7.05 -9.90 -0.07 -4.09 16 13 H 0.13 2.78 8.14 -2.39 -0.02 2.76 16 14 C 0.07 2.22 5.73 86.45 0.50 2.71 16 15 N -0.50 -16.87 4.98 -886.06 -4.41 -21.28 16 16 C 0.05 1.66 5.32 85.56 0.46 2.12 16 17 C 0.44 22.03 7.63 87.66 0.67 22.70 16 18 O -0.61 -35.13 14.80 -3.07 -0.05 -35.18 16 19 N -0.58 -30.72 5.29 -306.98 -1.62 -32.35 16 20 C -0.33 -19.38 9.68 84.04 0.81 -18.56 16 21 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 22 C -0.02 -0.85 5.50 84.93 0.47 -0.39 16 23 N -0.92 -51.14 13.05 21.66 0.28 -50.85 16 24 Si 0.99 44.07 29.55 68.60 2.03 46.10 16 25 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 26 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 27 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 28 C 0.06 1.32 6.26 86.45 0.54 1.86 16 29 C -0.14 -2.70 7.05 -9.90 -0.07 -2.77 16 30 H 0.15 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.10 0.08 7.57 -2.39 -0.02 0.06 16 32 H 0.11 -0.22 7.56 -2.39 -0.02 -0.24 16 33 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16 35 H 0.11 -0.31 7.57 -2.38 -0.02 -0.33 16 36 H 0.10 -0.06 7.56 -2.38 -0.02 -0.08 16 37 H 0.42 -0.86 7.67 -92.70 -0.71 -1.57 16 38 H 0.41 2.55 8.93 -92.71 -0.83 1.72 16 39 H 0.42 3.07 7.66 -92.70 -0.71 2.36 16 40 H 0.03 1.11 7.75 -2.39 -0.02 1.10 16 41 H 0.07 2.70 7.23 -2.38 -0.02 2.69 16 42 H 0.06 2.22 7.77 -2.39 -0.02 2.20 16 43 H 0.11 3.65 8.08 -2.39 -0.02 3.63 16 44 H 0.40 20.08 7.90 -92.71 -0.73 19.35 16 45 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16 46 H 0.05 1.18 8.00 -2.39 -0.02 1.16 16 47 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -93.42 387.22 -3.10 -96.53 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: -1.93 Total: 28.26 kcal Atomic # 6 Polarization: 21.16 SS G_CDS: 5.88 Total: 27.05 kcal Atomic # 7 Polarization: -115.19 SS G_CDS: -9.62 Total: -124.81 kcal Atomic # 8 Polarization: -73.67 SS G_CDS: 0.54 Total: -73.13 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -93.42 -3.10 -96.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114431014.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.097 kcal (2) G-P(sol) polarization free energy of solvation -93.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds