Wall clock time and date at job start Tue Mar 31 2020 21:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47116 * 2 1 4 4 C 1.52995 * 109.47327 * 185.18642 * 3 2 1 5 5 H 1.08999 * 109.47272 * 54.63373 * 4 3 2 6 6 C 1.53003 * 109.47143 * 294.63491 * 4 3 2 7 7 C 1.52999 * 109.47169 * 301.97146 * 6 4 3 8 8 O 1.42904 * 109.47046 * 182.42448 * 7 6 4 9 9 C 1.53000 * 109.47177 * 174.63796 * 4 3 2 10 10 N 1.46497 * 109.47219 * 185.00285 * 9 4 3 11 11 C 1.34779 * 119.99841 * 179.97438 * 10 9 4 12 12 O 1.21358 * 120.00375 * 359.97438 * 11 10 9 13 13 C 1.49310 * 119.99641 * 179.97438 * 11 10 9 14 14 O 1.21404 * 120.00459 * 359.97438 * 13 11 10 15 15 N 1.34779 * 119.99641 * 180.02562 * 13 11 10 16 16 C 1.40298 * 119.99638 * 179.97438 * 15 13 11 17 17 C 1.40714 * 126.10350 * 359.69236 * 16 15 13 18 18 N 1.30873 * 108.37936 * 179.81116 * 17 16 15 19 19 N 1.40063 * 108.43345 * 0.44786 * 18 17 16 20 20 C 1.37298 * 126.05696 * 179.69940 * 19 18 17 21 21 H 1.07995 * 120.00074 * 180.02562 * 20 19 18 22 22 C 1.39015 * 119.99794 * 0.02562 * 20 19 18 23 23 N 1.31280 * 119.99735 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99545 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47641 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47041 * 120.00712 * 24 22 20 27 27 H 1.48503 * 109.46755 * 239.99743 * 24 22 20 28 28 C 1.35789 * 126.09588 * 179.97438 * 16 15 13 29 29 H 1.08993 * 109.47307 * 59.99862 * 1 2 3 30 30 H 1.09006 * 109.46659 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46824 * 299.99214 * 1 2 3 32 32 H 1.09008 * 109.46944 * 240.00808 * 2 1 3 33 33 H 1.08991 * 109.47654 * 120.00534 * 2 1 3 34 34 H 1.09008 * 109.46325 * 65.18737 * 3 2 1 35 35 H 1.09002 * 109.46915 * 305.18998 * 3 2 1 36 36 H 1.09000 * 109.47225 * 181.96862 * 6 4 3 37 37 H 1.08996 * 109.46834 * 61.97046 * 6 4 3 38 38 H 1.08992 * 109.47377 * 62.42035 * 7 6 4 39 39 H 1.09007 * 109.47116 * 302.41941 * 7 6 4 40 40 H 0.96696 * 114.00093 * 179.97438 * 8 7 6 41 41 H 1.09000 * 109.46764 * 305.00188 * 9 4 3 42 42 H 1.09000 * 109.47290 * 64.99709 * 9 4 3 43 43 H 0.97001 * 119.99955 * 359.97438 * 10 9 4 44 44 H 0.97001 * 120.00204 * 359.97438 * 15 13 11 45 45 H 1.08004 * 125.81051 * 359.97438 * 17 16 15 46 46 H 0.97000 * 119.99406 * 179.97438 * 23 22 20 47 47 H 1.08005 * 126.25441 * 359.97299 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5644 1.4446 -0.1304 5 1 3.8543 0.8758 -1.0139 6 6 4.1836 0.8047 1.1139 7 6 3.7369 1.5739 2.3588 8 8 4.3599 1.0112 3.5153 9 6 4.0629 2.8848 -0.2648 10 7 5.5073 2.8809 -0.5091 11 6 6.1681 4.0456 -0.6620 12 8 5.5665 5.0976 -0.5977 13 6 7.6404 4.0416 -0.9104 14 8 8.2424 2.9892 -0.9743 15 7 8.3012 5.2063 -1.0627 16 6 9.6847 5.2025 -1.2956 17 6 10.5069 4.0643 -1.3878 18 7 11.7339 4.4588 -1.6147 19 7 11.7467 5.8585 -1.6661 20 6 12.8487 6.6493 -1.8793 21 1 12.7462 7.7241 -1.8994 22 6 14.0963 6.0663 -2.0692 23 7 14.2207 4.7596 -2.0452 24 14 15.5956 7.1423 -2.3585 25 1 15.1910 8.5709 -2.3389 26 1 16.5952 6.8966 -1.2881 27 1 16.1929 6.8145 -3.6780 28 6 10.4701 6.2969 -1.4670 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8898 34 1 1.7545 1.9288 0.9329 35 1 1.6028 1.9825 -0.8399 36 1 5.2703 0.8377 1.0368 37 1 3.8561 -0.2321 1.1904 38 1 2.6539 1.5047 2.4595 39 1 4.0268 2.6203 2.2628 40 1 4.1220 1.4506 4.3432 41 1 3.5546 3.3688 -1.0988 42 1 3.8514 3.4299 0.6551 43 1 5.9882 2.0400 -0.5609 44 1 7.8203 6.0471 -1.0114 45 1 10.1804 3.0394 -1.2908 46 1 15.0912 4.3528 -2.1781 47 1 10.1439 7.3263 -1.4492 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116338012.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:37 Heat of formation + Delta-G solvation = -54.495627 kcal Electronic energy + Delta-G solvation = -28587.255071 eV Core-core repulsion = 24385.700839 eV Total energy + Delta-G solvation = -4201.554231 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.56237 -39.63072 -38.75505 -37.78908 -36.46685 -35.00242 -34.15311 -33.17911 -32.35117 -30.32602 -28.82564 -28.08094 -26.90049 -25.20585 -24.35392 -23.58487 -21.88778 -21.01607 -20.35015 -19.70826 -19.42506 -18.13200 -17.97080 -17.44488 -16.42098 -16.14866 -15.89648 -15.56014 -15.39495 -15.11394 -15.07306 -14.61276 -14.16982 -14.05255 -13.98802 -13.72055 -13.45829 -13.42468 -13.03620 -12.98984 -12.53094 -12.39801 -12.15105 -11.84328 -11.74644 -11.57699 -11.43412 -11.30574 -11.26509 -11.08302 -10.91861 -10.83737 -10.74349 -10.52943 -10.29733 -10.16763 -9.28610 -9.23426 -9.13413 -8.87553 -8.12895 -6.77986 -6.60659 -4.27864 1.65275 2.58671 2.92404 3.03972 3.09796 3.32732 3.71708 3.74263 3.84501 3.98222 4.23838 4.34676 4.37343 4.48549 4.61123 4.67936 4.81230 4.89237 4.94212 4.98070 5.02913 5.10805 5.15724 5.22177 5.23171 5.38287 5.46057 5.54665 5.62464 5.67085 5.78575 5.83010 5.90220 5.98540 6.16025 6.20107 6.36029 6.75431 6.89036 6.91566 7.16183 7.20236 7.32797 7.75741 7.85076 8.09874 8.18481 8.48610 8.69477 9.31263 9.59925 10.35237 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.027655 B = 0.001820 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.239303 B =15377.309626 C =15632.594061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.117 4.117 4 C -0.098 4.098 5 H 0.088 0.912 6 C -0.120 4.120 7 C 0.070 3.930 8 O -0.574 6.574 9 C 0.118 3.882 10 N -0.703 5.703 11 C 0.515 3.485 12 O -0.530 6.530 13 C 0.483 3.517 14 O -0.522 6.522 15 N -0.583 5.583 16 C -0.070 4.070 17 C -0.026 4.026 18 N -0.260 5.260 19 N -0.138 5.138 20 C -0.322 4.322 21 H 0.119 0.881 22 C 0.046 3.954 23 N -0.767 5.767 24 Si 0.936 3.064 25 H -0.262 1.262 26 H -0.273 1.273 27 H -0.273 1.273 28 C -0.077 4.077 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.379 0.621 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.414 0.586 44 H 0.409 0.591 45 H 0.178 0.822 46 H 0.275 0.725 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.390 -5.640 5.374 24.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.155 4.155 4 C -0.117 4.117 5 H 0.106 0.894 6 C -0.158 4.158 7 C -0.007 4.007 8 O -0.380 6.380 9 C -0.005 4.005 10 N -0.358 5.358 11 C 0.296 3.704 12 O -0.406 6.406 13 C 0.264 3.736 14 O -0.400 6.400 15 N -0.226 5.226 16 C -0.176 4.176 17 C -0.202 4.202 18 N -0.091 5.091 19 N 0.095 4.905 20 C -0.454 4.454 21 H 0.136 0.864 22 C -0.171 4.171 23 N -0.394 5.394 24 Si 0.760 3.240 25 H -0.186 1.186 26 H -0.199 1.199 27 H -0.199 1.199 28 C -0.229 4.229 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.226 0.774 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.251 0.749 44 H 0.244 0.756 45 H 0.194 0.806 46 H 0.086 0.914 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -21.758 -6.577 4.701 23.211 hybrid contribution -0.569 1.244 0.420 1.431 sum -22.327 -5.333 5.121 23.519 Atomic orbital electron populations 1.21775 0.95828 1.01651 1.01791 1.21567 0.95830 0.96495 1.02441 1.21672 0.93454 0.97586 1.02753 1.21437 0.96097 0.95288 0.98896 0.89357 1.21569 1.01812 1.00166 0.92228 1.22356 0.95906 0.96628 0.85824 1.86482 1.72918 1.61285 1.17284 1.21579 0.79883 0.96880 1.02206 1.45722 1.09049 1.09274 1.71715 1.20292 0.88522 0.84170 0.77385 1.90727 1.69443 1.30973 1.49431 1.19650 0.87255 0.84830 0.81898 1.90658 1.68028 1.30811 1.50500 1.42146 1.06846 1.08169 1.65437 1.17258 0.81909 0.94618 1.23772 1.24145 0.90418 0.98744 1.06886 1.78262 1.17319 0.88200 1.25334 1.44572 1.03986 1.04465 1.37506 1.19979 0.83967 0.90409 1.51072 0.86380 1.25672 0.99697 0.96241 0.95536 1.70218 1.25052 1.09272 1.34820 0.85739 0.79956 0.79757 0.78564 1.18616 1.19862 1.19861 1.21306 0.86021 0.97108 1.18436 0.92707 0.92770 0.92822 0.91770 0.91646 0.91321 0.91265 0.90663 0.90528 0.93392 0.93376 0.77429 0.90804 0.90869 0.74935 0.75611 0.80557 0.91400 0.83350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.91 37.16 0.37 -0.38 16 2 C -0.13 -0.66 5.57 -26.73 -0.15 -0.81 16 3 C -0.12 -0.62 4.43 -26.73 -0.12 -0.74 16 4 C -0.10 -0.64 2.20 -90.62 -0.20 -0.84 16 5 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 6 C -0.12 -0.93 4.97 -26.73 -0.13 -1.06 16 7 C 0.07 0.54 6.34 37.16 0.24 0.78 16 8 O -0.57 -5.29 13.66 -35.23 -0.48 -5.77 16 9 C 0.12 1.03 4.89 -4.04 -0.02 1.02 16 10 N -0.70 -8.13 5.26 -60.78 -0.32 -8.45 16 11 C 0.52 7.76 7.88 -11.65 -0.09 7.66 16 12 O -0.53 -8.67 16.47 5.49 0.09 -8.58 16 13 C 0.48 8.78 7.85 -11.65 -0.09 8.69 16 14 O -0.52 -10.61 13.62 5.45 0.07 -10.54 16 15 N -0.58 -11.08 5.45 -10.45 -0.06 -11.14 16 16 C -0.07 -1.62 6.90 -83.92 -0.58 -2.20 16 17 C -0.03 -0.68 10.84 -17.03 -0.18 -0.87 16 18 N -0.26 -7.50 10.39 30.81 0.32 -7.18 16 19 N -0.14 -3.78 3.73 -11.40 -0.04 -3.82 16 20 C -0.32 -8.45 10.25 -14.82 -0.15 -8.60 16 21 H 0.12 2.77 7.83 -52.49 -0.41 2.36 16 22 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 23 N -0.77 -21.22 11.81 55.50 0.66 -20.56 16 24 Si 0.94 18.74 29.55 -169.99 -5.02 13.72 16 25 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 26 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 27 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 28 C -0.08 -1.82 11.50 -16.38 -0.19 -2.01 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 33 H 0.06 0.36 6.88 -51.93 -0.36 0.01 16 34 H 0.07 0.35 6.16 -51.92 -0.32 0.03 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.70 7.14 -51.93 -0.37 0.33 16 37 H 0.08 0.57 6.79 -51.93 -0.35 0.22 16 38 H 0.05 0.29 6.41 -51.93 -0.33 -0.04 16 39 H 0.05 0.39 6.25 -51.93 -0.32 0.07 16 40 H 0.38 1.87 9.12 45.56 0.42 2.29 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.66 6.19 -51.93 -0.32 0.34 16 43 H 0.41 4.55 7.12 -40.82 -0.29 4.26 16 44 H 0.41 6.70 8.29 -40.82 -0.34 6.36 16 45 H 0.18 4.47 5.92 -52.48 -0.31 4.16 16 46 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 47 H 0.15 2.93 8.06 -52.48 -0.42 2.51 16 LS Contribution 387.74 15.07 5.84 5.84 Total: -1.00 -34.07 387.74 -6.17 -40.24 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -5.83 Total: 14.53 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -1.40 Total: 1.72 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: 0.56 Total: -51.16 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.32 Total: -24.89 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.02 Total: 13.72 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.07 -6.17 -40.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116338012.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.252 kcal (2) G-P(sol) polarization free energy of solvation -34.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds