Wall clock time and date at job start Tue Mar 31 2020 21:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47116 * 2 1 4 4 C 1.52995 * 109.47327 * 185.18642 * 3 2 1 5 5 H 1.08999 * 109.47272 * 54.63373 * 4 3 2 6 6 C 1.53003 * 109.47143 * 294.63491 * 4 3 2 7 7 C 1.52999 * 109.47169 * 301.97146 * 6 4 3 8 8 O 1.42904 * 109.47046 * 182.42448 * 7 6 4 9 9 C 1.53000 * 109.47177 * 174.63796 * 4 3 2 10 10 N 1.46497 * 109.47219 * 185.00285 * 9 4 3 11 11 C 1.34779 * 119.99841 * 179.97438 * 10 9 4 12 12 O 1.21358 * 120.00375 * 359.97438 * 11 10 9 13 13 C 1.49310 * 119.99641 * 179.97438 * 11 10 9 14 14 O 1.21404 * 120.00459 * 359.97438 * 13 11 10 15 15 N 1.34779 * 119.99641 * 180.02562 * 13 11 10 16 16 C 1.40298 * 119.99638 * 179.97438 * 15 13 11 17 17 C 1.40714 * 126.10350 * 359.69236 * 16 15 13 18 18 N 1.30873 * 108.37936 * 179.81116 * 17 16 15 19 19 N 1.40063 * 108.43345 * 0.44786 * 18 17 16 20 20 C 1.37298 * 126.05696 * 179.69940 * 19 18 17 21 21 H 1.07995 * 120.00074 * 180.02562 * 20 19 18 22 22 C 1.39015 * 119.99794 * 0.02562 * 20 19 18 23 23 N 1.31280 * 119.99735 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99545 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47641 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47041 * 120.00712 * 24 22 20 27 27 H 1.48503 * 109.46755 * 239.99743 * 24 22 20 28 28 C 1.35789 * 126.09588 * 179.97438 * 16 15 13 29 29 H 1.08993 * 109.47307 * 59.99862 * 1 2 3 30 30 H 1.09006 * 109.46659 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46824 * 299.99214 * 1 2 3 32 32 H 1.09008 * 109.46944 * 240.00808 * 2 1 3 33 33 H 1.08991 * 109.47654 * 120.00534 * 2 1 3 34 34 H 1.09008 * 109.46325 * 65.18737 * 3 2 1 35 35 H 1.09002 * 109.46915 * 305.18998 * 3 2 1 36 36 H 1.09000 * 109.47225 * 181.96862 * 6 4 3 37 37 H 1.08996 * 109.46834 * 61.97046 * 6 4 3 38 38 H 1.08992 * 109.47377 * 62.42035 * 7 6 4 39 39 H 1.09007 * 109.47116 * 302.41941 * 7 6 4 40 40 H 0.96696 * 114.00093 * 179.97438 * 8 7 6 41 41 H 1.09000 * 109.46764 * 305.00188 * 9 4 3 42 42 H 1.09000 * 109.47290 * 64.99709 * 9 4 3 43 43 H 0.97001 * 119.99955 * 359.97438 * 10 9 4 44 44 H 0.97001 * 120.00204 * 359.97438 * 15 13 11 45 45 H 1.08004 * 125.81051 * 359.97438 * 17 16 15 46 46 H 0.97000 * 119.99406 * 179.97438 * 23 22 20 47 47 H 1.08005 * 126.25441 * 359.97299 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5644 1.4446 -0.1304 5 1 3.8543 0.8758 -1.0139 6 6 4.1836 0.8047 1.1139 7 6 3.7369 1.5739 2.3588 8 8 4.3599 1.0112 3.5153 9 6 4.0629 2.8848 -0.2648 10 7 5.5073 2.8809 -0.5091 11 6 6.1681 4.0456 -0.6620 12 8 5.5665 5.0976 -0.5977 13 6 7.6404 4.0416 -0.9104 14 8 8.2424 2.9892 -0.9743 15 7 8.3012 5.2063 -1.0627 16 6 9.6847 5.2025 -1.2956 17 6 10.5069 4.0643 -1.3878 18 7 11.7339 4.4588 -1.6147 19 7 11.7467 5.8585 -1.6661 20 6 12.8487 6.6493 -1.8793 21 1 12.7462 7.7241 -1.8994 22 6 14.0963 6.0663 -2.0692 23 7 14.2207 4.7596 -2.0452 24 14 15.5956 7.1423 -2.3585 25 1 15.1910 8.5709 -2.3389 26 1 16.5952 6.8966 -1.2881 27 1 16.1929 6.8145 -3.6780 28 6 10.4701 6.2969 -1.4670 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8898 34 1 1.7545 1.9288 0.9329 35 1 1.6028 1.9825 -0.8399 36 1 5.2703 0.8377 1.0368 37 1 3.8561 -0.2321 1.1904 38 1 2.6539 1.5047 2.4595 39 1 4.0268 2.6203 2.2628 40 1 4.1220 1.4506 4.3432 41 1 3.5546 3.3688 -1.0988 42 1 3.8514 3.4299 0.6551 43 1 5.9882 2.0400 -0.5609 44 1 7.8203 6.0471 -1.0114 45 1 10.1804 3.0394 -1.2908 46 1 15.0912 4.3528 -2.1781 47 1 10.1439 7.3263 -1.4492 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116338012.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:37 Heat of formation + Delta-G solvation = -81.262844 kcal Electronic energy + Delta-G solvation = -28588.415784 eV Core-core repulsion = 24385.700839 eV Total energy + Delta-G solvation = -4202.714945 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.04281 -41.22656 -39.78967 -39.00661 -37.14780 -36.28009 -35.46626 -34.89953 -33.03319 -32.30144 -29.98168 -29.39947 -27.81460 -26.87079 -25.14294 -24.73841 -22.94413 -22.43125 -21.67058 -21.24695 -20.41354 -19.51406 -19.10503 -18.60798 -17.67795 -17.46142 -17.11123 -16.80361 -16.56554 -16.46952 -16.07838 -15.68508 -15.48941 -15.18287 -15.04618 -14.87257 -14.79601 -14.54154 -14.16386 -14.06949 -13.52450 -13.38898 -13.17129 -12.98611 -12.94300 -12.93718 -12.69560 -12.49252 -12.35461 -12.02666 -11.99382 -11.91562 -11.61329 -11.37902 -11.30224 -11.08790 -10.87860 -10.78441 -10.57863 -10.25511 -10.14714 -8.62877 -8.49432 -6.27206 0.28241 1.28297 1.30889 1.42372 1.60154 1.71892 2.03868 2.11523 2.53043 2.58410 2.93520 3.07256 3.31482 3.52959 3.63791 3.80578 3.95583 4.20459 4.31831 4.38094 4.38832 4.39400 4.49873 4.51966 4.60820 4.70102 4.73682 4.83777 4.95316 4.97057 4.97929 5.04213 5.13017 5.15304 5.19743 5.21801 5.23360 5.30259 5.38869 5.45701 5.55200 5.89827 5.99441 6.24133 6.47297 6.66801 6.79135 6.88202 7.06953 7.40913 7.62300 8.50060 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.027655 B = 0.001820 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.239303 B =15377.309626 C =15632.594061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.112 4.112 4 C -0.086 4.086 5 H 0.094 0.906 6 C -0.121 4.121 7 C 0.069 3.931 8 O -0.599 6.599 9 C 0.115 3.885 10 N -0.687 5.687 11 C 0.524 3.476 12 O -0.540 6.540 13 C 0.484 3.516 14 O -0.544 6.544 15 N -0.582 5.582 16 C -0.057 4.057 17 C -0.048 4.048 18 N -0.308 5.308 19 N -0.163 5.163 20 C -0.353 4.353 21 H 0.142 0.858 22 C -0.005 4.005 23 N -0.821 5.821 24 Si 1.020 2.980 25 H -0.241 1.241 26 H -0.272 1.272 27 H -0.272 1.272 28 C -0.074 4.074 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.043 0.957 40 H 0.395 0.605 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.417 0.583 44 H 0.423 0.577 45 H 0.175 0.825 46 H 0.278 0.722 47 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.195 -4.297 5.502 26.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.150 4.150 4 C -0.105 4.105 5 H 0.112 0.888 6 C -0.158 4.158 7 C -0.009 4.009 8 O -0.407 6.407 9 C -0.007 4.007 10 N -0.340 5.340 11 C 0.304 3.696 12 O -0.418 6.418 13 C 0.266 3.734 14 O -0.422 6.422 15 N -0.227 5.227 16 C -0.164 4.164 17 C -0.224 4.224 18 N -0.140 5.140 19 N 0.069 4.931 20 C -0.484 4.484 21 H 0.160 0.840 22 C -0.217 4.217 23 N -0.449 5.449 24 Si 0.839 3.161 25 H -0.164 1.164 26 H -0.197 1.197 27 H -0.197 1.197 28 C -0.225 4.225 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.061 0.939 40 H 0.244 0.756 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.255 0.745 44 H 0.261 0.739 45 H 0.192 0.808 46 H 0.088 0.912 47 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -23.636 -5.237 4.851 24.691 hybrid contribution -0.219 0.729 0.441 0.880 sum -23.855 -4.508 5.292 24.848 Atomic orbital electron populations 1.21775 0.95486 1.01790 1.02007 1.21548 0.96098 0.96282 1.02281 1.21648 0.92108 0.97857 1.03391 1.21363 0.96941 0.93650 0.98552 0.88819 1.21575 1.00642 1.00653 0.92956 1.22428 0.96954 0.96103 0.85372 1.86438 1.73584 1.62134 1.18561 1.21836 0.77749 0.98550 1.02606 1.45773 1.10285 1.08252 1.69664 1.19609 0.86770 0.85046 0.78157 1.90732 1.68996 1.31461 1.50616 1.20346 0.88802 0.84081 0.80189 1.90650 1.69060 1.31671 1.50856 1.42087 1.05246 1.09397 1.65992 1.17303 0.83678 0.93517 1.21858 1.24240 0.90681 0.99536 1.07917 1.78158 1.18877 0.89905 1.27018 1.44850 1.05423 1.04042 1.38800 1.20713 0.84410 0.91585 1.51735 0.84029 1.26893 1.02956 0.97536 0.94345 1.70384 1.26039 1.11718 1.36760 0.84522 0.74980 0.78511 0.78114 1.16364 1.19740 1.19706 1.22008 0.84962 0.98969 1.16588 0.92536 0.92728 0.92564 0.91839 0.91960 0.90719 0.90598 0.92606 0.90189 0.91423 0.93874 0.75564 0.90097 0.90522 0.74528 0.73893 0.80818 0.91240 0.79451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 71.98 0.71 -0.49 16 2 C -0.12 -1.05 5.57 30.60 0.17 -0.88 16 3 C -0.11 -0.92 4.43 30.59 0.14 -0.79 16 4 C -0.09 -0.96 2.20 -10.79 -0.02 -0.98 16 5 H 0.09 0.98 8.14 -2.39 -0.02 0.97 16 6 C -0.12 -1.71 4.97 30.59 0.15 -1.56 16 7 C 0.07 0.95 6.34 71.98 0.46 1.41 16 8 O -0.60 -10.41 13.66 -148.98 -2.04 -12.44 16 9 C 0.11 1.77 4.89 86.38 0.42 2.19 16 10 N -0.69 -14.89 5.26 -464.56 -2.44 -17.33 16 11 C 0.52 15.05 7.88 87.23 0.69 15.74 16 12 O -0.54 -16.66 16.47 -3.27 -0.05 -16.71 16 13 C 0.48 17.31 7.85 87.23 0.69 17.99 16 14 O -0.54 -22.25 13.62 -3.41 -0.05 -22.29 16 15 N -0.58 -21.62 5.45 -305.33 -1.66 -23.28 16 16 C -0.06 -2.66 6.90 37.82 0.26 -2.40 16 17 C -0.05 -2.59 10.84 85.44 0.93 -1.67 16 18 N -0.31 -18.38 10.39 -56.44 -0.59 -18.97 16 19 N -0.16 -9.02 3.73 -189.97 -0.71 -9.73 16 20 C -0.35 -18.58 10.25 84.02 0.86 -17.72 16 21 H 0.14 6.46 7.83 -2.91 -0.02 6.44 16 22 C -0.01 -0.27 5.50 84.96 0.47 0.20 16 23 N -0.82 -46.93 11.81 21.67 0.26 -46.67 16 24 Si 1.02 38.22 29.55 68.60 2.03 40.25 16 25 H -0.24 -8.09 7.11 99.48 0.71 -7.38 16 26 H -0.27 -10.04 7.11 99.48 0.71 -9.34 16 27 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 28 C -0.07 -3.47 11.50 83.41 0.96 -2.51 16 29 H 0.06 0.42 8.14 -2.39 -0.02 0.41 16 30 H 0.05 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 33 H 0.06 0.57 6.88 -2.39 -0.02 0.56 16 34 H 0.07 0.55 6.16 -2.38 -0.01 0.53 16 35 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.06 1.01 7.14 -2.39 -0.02 0.99 16 37 H 0.08 1.09 6.79 -2.39 -0.02 1.07 16 38 H 0.07 0.66 6.41 -2.39 -0.02 0.65 16 39 H 0.04 0.63 6.25 -2.38 -0.01 0.62 16 40 H 0.39 3.47 9.12 -74.06 -0.68 2.79 16 41 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.08 1.20 6.19 -2.39 -0.01 1.19 16 43 H 0.42 8.76 7.12 -92.71 -0.66 8.10 16 44 H 0.42 13.16 8.29 -92.71 -0.77 12.39 16 45 H 0.18 9.18 5.92 -2.91 -0.02 9.16 16 46 H 0.28 14.52 8.31 -92.71 -0.77 13.75 16 47 H 0.19 6.97 8.06 -2.91 -0.02 6.95 16 Total: -1.00 -75.59 387.74 0.56 -75.03 By element: Atomic # 1 Polarization: 44.66 SS G_CDS: -1.06 Total: 43.60 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 6.87 Total: 8.55 kcal Atomic # 7 Polarization: -110.83 SS G_CDS: -5.15 Total: -115.98 kcal Atomic # 8 Polarization: -49.31 SS G_CDS: -2.14 Total: -51.45 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 2.03 Total: 40.25 kcal Total: -75.59 0.56 -75.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116338012.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.235 kcal (2) G-P(sol) polarization free energy of solvation -75.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds