Wall clock time and date at job start Tue Mar 31 2020 21:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47224 * 2 1 4 4 H 1.09004 * 109.46714 * 55.00523 * 3 2 1 5 5 C 1.53007 * 109.47248 * 175.00126 * 3 2 1 6 6 C 1.53001 * 109.47224 * 184.25062 * 5 3 2 7 7 H 1.09002 * 109.46914 * 305.90843 * 6 5 3 8 8 C 1.52992 * 109.46810 * 185.90871 * 6 5 3 9 9 C 1.52998 * 109.46919 * 65.90612 * 6 5 3 10 10 O 1.42902 * 109.46568 * 184.99936 * 9 6 5 11 11 N 1.46493 * 109.47283 * 295.00436 * 3 2 1 12 12 C 1.34773 * 120.00429 * 85.00102 * 11 3 2 13 13 O 1.21364 * 119.99857 * 359.97438 * 12 11 3 14 14 C 1.49305 * 120.00395 * 180.02562 * 12 11 3 15 15 O 1.21405 * 119.99945 * 359.97438 * 14 12 11 16 16 N 1.34773 * 120.00395 * 179.97438 * 14 12 11 17 17 C 1.40291 * 120.00575 * 179.97438 * 16 14 12 18 18 C 1.40725 * 126.09608 * 359.68669 * 17 16 14 19 19 N 1.30879 * 108.37501 * 179.81452 * 18 17 16 20 20 N 1.40060 * 108.43442 * 0.44846 * 19 18 17 21 21 C 1.37297 * 126.05671 * 179.70115 * 20 19 18 22 22 H 1.08001 * 120.00190 * 180.02562 * 21 20 19 23 23 C 1.39006 * 119.99855 * 0.02562 * 21 20 19 24 24 N 1.31281 * 119.99852 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00202 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.46932 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47437 * 119.99822 * 25 23 21 28 28 H 1.48502 * 109.47204 * 240.00123 * 25 23 21 29 29 C 1.35786 * 126.10393 * 179.97438 * 17 16 14 30 30 H 1.09002 * 109.46863 * 299.99435 * 1 2 3 31 31 H 1.09001 * 109.47133 * 59.99637 * 1 2 3 32 32 H 1.08999 * 109.47103 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46888 * 240.00045 * 2 1 3 34 34 H 1.09001 * 109.47133 * 120.00363 * 2 1 3 35 35 H 1.09000 * 109.46890 * 64.24613 * 5 3 2 36 36 H 1.09001 * 109.46718 * 304.24806 * 5 3 2 37 37 H 1.09005 * 109.47261 * 55.01411 * 8 6 5 38 38 H 1.09003 * 109.47087 * 175.00925 * 8 6 5 39 39 H 1.08999 * 109.47417 * 295.00679 * 8 6 5 40 40 H 1.08996 * 109.47432 * 305.00259 * 9 6 5 41 41 H 1.09000 * 109.47159 * 65.00795 * 9 6 5 42 42 H 0.96710 * 113.99631 * 180.02562 * 10 9 6 43 43 H 0.97004 * 119.99964 * 265.00075 * 11 3 2 44 44 H 0.97004 * 119.99607 * 359.97438 * 16 14 12 45 45 H 1.07997 * 125.81475 * 359.97438 * 18 17 16 46 46 H 0.97004 * 120.00038 * 179.97438 * 24 23 21 47 47 H 1.08003 * 126.24922 * 359.97059 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4443 0.1257 6 6 4.0662 2.8860 0.2323 7 1 3.6861 3.4659 -0.6088 8 6 5.5959 2.8969 0.2097 9 6 3.5709 3.5025 1.5421 10 8 3.9398 4.8823 1.5884 11 7 1.6524 2.0975 -1.2517 12 6 0.4352 2.6645 -1.3668 13 8 -0.3401 2.6320 -0.4336 14 6 0.0399 3.3316 -2.6427 15 8 0.8152 3.3637 -3.5764 16 7 -1.1775 3.8981 -2.7580 17 6 -1.5487 4.5254 -3.9567 18 6 -0.7535 4.6432 -5.1117 19 7 -1.4403 5.2857 -6.0218 20 7 -2.6918 5.6118 -5.4841 21 6 -3.6951 6.2932 -6.1275 22 1 -4.6257 6.4929 -5.6171 23 6 -3.5132 6.7261 -7.4358 24 7 -2.3821 6.4828 -8.0564 25 14 -4.8779 7.6538 -8.3111 26 1 -6.0421 7.7972 -7.4003 27 1 -4.3883 8.9994 -8.7049 28 1 -5.2887 6.9020 -9.5240 29 6 -2.7374 5.1320 -4.2076 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 4.0025 0.9715 -0.7536 36 1 3.8565 0.8913 1.0186 37 1 5.9498 2.3787 -0.6816 38 1 5.9517 3.9272 0.1962 39 1 5.9761 2.3929 1.0982 40 1 2.4860 3.4143 1.5979 41 1 4.0219 2.9775 2.3842 42 1 3.6578 5.3380 2.3934 43 1 2.2719 2.1232 -1.9977 44 1 -1.7971 3.8721 -2.0121 45 1 0.2515 4.2652 -5.2283 46 1 -2.2552 6.7846 -8.9695 47 1 -3.5674 5.2187 -3.5220 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116338281.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:56 Heat of formation + Delta-G solvation = -50.451717 kcal Electronic energy + Delta-G solvation = -29447.995305 eV Core-core repulsion = 25246.616431 eV Total energy + Delta-G solvation = -4201.378874 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.70144 -39.68666 -38.52789 -37.74526 -36.39890 -34.48946 -33.90876 -33.18121 -32.36610 -30.31637 -29.02231 -28.02313 -26.47545 -25.50022 -24.35900 -23.67262 -21.27893 -20.91283 -20.42267 -20.20321 -19.46060 -18.13164 -17.66977 -17.42728 -16.73014 -16.06131 -15.63141 -15.54382 -15.33823 -15.11314 -14.61419 -14.36969 -14.17088 -14.03049 -13.66842 -13.40690 -13.24543 -12.98544 -12.95296 -12.89118 -12.67623 -12.45930 -11.99269 -11.75572 -11.65617 -11.53816 -11.30640 -11.30072 -11.19495 -11.03354 -10.95412 -10.79988 -10.72232 -10.52696 -10.28699 -10.15016 -9.23401 -9.20525 -9.07716 -8.86779 -8.12281 -6.77192 -6.60141 -4.27280 1.67978 2.61789 2.92777 3.04209 3.09968 3.34183 3.72711 3.75577 3.90511 4.00507 4.22394 4.37953 4.51628 4.61857 4.71923 4.81749 4.91306 4.98553 5.01485 5.02988 5.15609 5.18504 5.29653 5.36476 5.44402 5.52303 5.57765 5.72260 5.78015 5.84415 5.97357 6.00889 6.05261 6.20301 6.25508 6.33048 6.36834 6.76633 6.89527 6.93237 7.16818 7.24675 7.37606 7.77728 7.87810 8.11986 8.19238 8.49885 8.70337 9.31852 9.60538 10.35710 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018654 B = 0.002256 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.667887 B =12409.065927 C =13028.400631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.135 4.135 3 C 0.139 3.861 4 H 0.093 0.907 5 C -0.122 4.122 6 C -0.096 4.096 7 H 0.084 0.916 8 C -0.142 4.142 9 C 0.078 3.922 10 O -0.571 6.571 11 N -0.697 5.697 12 C 0.517 3.483 13 O -0.525 6.525 14 C 0.482 3.518 15 O -0.523 6.523 16 N -0.584 5.584 17 C -0.069 4.069 18 C -0.027 4.027 19 N -0.260 5.260 20 N -0.139 5.139 21 C -0.321 4.321 22 H 0.118 0.882 23 C 0.046 3.954 24 N -0.767 5.767 25 Si 0.936 3.064 26 H -0.262 1.262 27 H -0.273 1.273 28 H -0.273 1.273 29 C -0.078 4.078 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.046 0.954 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.051 0.949 40 H 0.048 0.952 41 H 0.043 0.957 42 H 0.378 0.622 43 H 0.412 0.588 44 H 0.409 0.591 45 H 0.177 0.823 46 H 0.275 0.725 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.849 -9.694 18.135 22.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.035 3.965 4 H 0.111 0.889 5 C -0.160 4.160 6 C -0.115 4.115 7 H 0.102 0.898 8 C -0.199 4.199 9 C 0.000 4.000 10 O -0.376 6.376 11 N -0.351 5.351 12 C 0.298 3.702 13 O -0.401 6.401 14 C 0.263 3.737 15 O -0.401 6.401 16 N -0.226 5.226 17 C -0.174 4.174 18 C -0.203 4.203 19 N -0.091 5.091 20 N 0.094 4.906 21 C -0.454 4.454 22 H 0.136 0.864 23 C -0.172 4.172 24 N -0.394 5.394 25 Si 0.760 3.240 26 H -0.186 1.186 27 H -0.199 1.199 28 H -0.199 1.199 29 C -0.229 4.229 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.225 0.775 43 H 0.249 0.751 44 H 0.243 0.757 45 H 0.194 0.806 46 H 0.086 0.914 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 10.218 -9.348 16.147 21.272 hybrid contribution -0.936 0.134 1.125 1.469 sum 9.282 -9.214 17.271 21.665 Atomic orbital electron populations 1.21822 0.94709 1.00795 1.03163 1.21979 0.97315 0.95649 1.02381 1.21252 0.94463 0.93527 0.87285 0.88910 1.21943 0.93828 0.96537 1.03686 1.21153 0.96730 0.95484 0.98114 0.89794 1.21758 0.94346 1.02460 1.01379 1.22321 0.98333 0.82150 0.97208 1.86492 1.82275 1.23123 1.45744 1.45779 1.16239 1.56076 1.17027 1.20210 0.82508 0.79034 0.88429 1.90729 1.50926 1.58245 1.40159 1.19714 0.83323 0.82507 0.88199 1.90656 1.51039 1.58902 1.39462 1.42145 1.14639 1.51215 1.14639 1.17251 0.97159 1.14356 0.88684 1.24147 1.01055 1.04302 0.90749 1.78261 0.90825 1.20269 1.19754 1.44570 1.09905 1.29995 1.06084 1.19967 0.94372 1.33918 0.97112 0.86407 1.25669 0.97801 0.96942 0.96751 1.70218 1.22308 1.35245 1.11595 0.85743 0.79862 0.78996 0.79436 1.18627 1.19858 1.19872 1.21304 0.99361 1.11363 0.90893 0.92107 0.92390 0.93455 0.91563 0.91038 0.90223 0.89943 0.92570 0.91911 0.93011 0.93388 0.93842 0.77516 0.75121 0.75655 0.80578 0.91414 0.83382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.51 37.16 0.32 -1.24 16 2 C -0.13 -1.11 5.61 -26.73 -0.15 -1.26 16 3 C 0.14 1.21 2.13 -67.93 -0.14 1.07 16 4 H 0.09 0.91 5.75 -51.93 -0.30 0.61 16 5 C -0.12 -0.81 4.22 -26.73 -0.11 -0.92 16 6 C -0.10 -0.81 2.57 -90.62 -0.23 -1.04 16 7 H 0.08 0.90 7.57 -51.93 -0.39 0.51 16 8 C -0.14 -1.11 9.04 37.15 0.34 -0.78 16 9 C 0.08 0.65 6.31 37.16 0.23 0.88 16 10 O -0.57 -5.56 13.28 -35.23 -0.47 -6.02 16 11 N -0.70 -7.86 4.35 -54.28 -0.24 -8.09 16 12 C 0.52 7.51 6.45 -11.65 -0.08 7.43 16 13 O -0.52 -8.01 13.61 5.48 0.07 -7.94 16 14 C 0.48 8.67 7.85 -11.65 -0.09 8.58 16 15 O -0.52 -10.59 13.62 5.45 0.07 -10.51 16 16 N -0.58 -11.01 5.45 -10.46 -0.06 -11.07 16 17 C -0.07 -1.59 6.90 -83.92 -0.58 -2.17 16 18 C -0.03 -0.70 10.85 -17.02 -0.18 -0.88 16 19 N -0.26 -7.50 10.39 30.81 0.32 -7.18 16 20 N -0.14 -3.79 3.73 -11.40 -0.04 -3.83 16 21 C -0.32 -8.43 10.25 -14.82 -0.15 -8.58 16 22 H 0.12 2.76 7.83 -52.49 -0.41 2.35 16 23 C 0.05 1.17 5.50 -17.50 -0.10 1.08 16 24 N -0.77 -21.23 11.81 55.50 0.66 -20.57 16 25 Si 0.94 18.76 29.55 -169.99 -5.02 13.74 16 26 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 27 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 28 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 29 C -0.08 -1.84 11.50 -16.38 -0.19 -2.03 16 30 H 0.06 0.67 7.85 -51.93 -0.41 0.27 16 31 H 0.06 0.75 5.64 -51.93 -0.29 0.46 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.58 7.96 -51.93 -0.41 0.17 16 39 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.05 0.42 6.30 -51.93 -0.33 0.10 16 41 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.38 2.07 9.12 45.56 0.42 2.49 16 43 H 0.41 4.46 8.07 -40.82 -0.33 4.14 16 44 H 0.41 6.64 8.29 -40.82 -0.34 6.30 16 45 H 0.18 4.47 5.92 -52.49 -0.31 4.16 16 46 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 47 H 0.15 2.93 8.06 -52.48 -0.42 2.51 16 LS Contribution 386.59 15.07 5.83 5.83 Total: -1.00 -33.54 386.59 -6.04 -39.58 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: -6.05 Total: 15.94 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -1.12 Total: 0.13 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: 0.64 Total: -50.75 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.32 Total: -24.47 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.02 Total: 13.74 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.54 -6.04 -39.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116338281.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.870 kcal (2) G-P(sol) polarization free energy of solvation -33.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds