Wall clock time and date at job start Tue Mar 31 2020 21:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47224 * 2 1 4 4 H 1.09004 * 109.46714 * 55.00523 * 3 2 1 5 5 C 1.53007 * 109.47248 * 175.00126 * 3 2 1 6 6 C 1.53001 * 109.47224 * 184.25062 * 5 3 2 7 7 H 1.09002 * 109.46914 * 305.90843 * 6 5 3 8 8 C 1.52992 * 109.46810 * 185.90871 * 6 5 3 9 9 C 1.52998 * 109.46919 * 65.90612 * 6 5 3 10 10 O 1.42902 * 109.46568 * 184.99936 * 9 6 5 11 11 N 1.46493 * 109.47283 * 295.00436 * 3 2 1 12 12 C 1.34773 * 120.00429 * 85.00102 * 11 3 2 13 13 O 1.21364 * 119.99857 * 359.97438 * 12 11 3 14 14 C 1.49305 * 120.00395 * 180.02562 * 12 11 3 15 15 O 1.21405 * 119.99945 * 359.97438 * 14 12 11 16 16 N 1.34773 * 120.00395 * 179.97438 * 14 12 11 17 17 C 1.40291 * 120.00575 * 179.97438 * 16 14 12 18 18 C 1.40725 * 126.09608 * 359.68669 * 17 16 14 19 19 N 1.30879 * 108.37501 * 179.81452 * 18 17 16 20 20 N 1.40060 * 108.43442 * 0.44846 * 19 18 17 21 21 C 1.37297 * 126.05671 * 179.70115 * 20 19 18 22 22 H 1.08001 * 120.00190 * 180.02562 * 21 20 19 23 23 C 1.39006 * 119.99855 * 0.02562 * 21 20 19 24 24 N 1.31281 * 119.99852 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00202 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.46932 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47437 * 119.99822 * 25 23 21 28 28 H 1.48502 * 109.47204 * 240.00123 * 25 23 21 29 29 C 1.35786 * 126.10393 * 179.97438 * 17 16 14 30 30 H 1.09002 * 109.46863 * 299.99435 * 1 2 3 31 31 H 1.09001 * 109.47133 * 59.99637 * 1 2 3 32 32 H 1.08999 * 109.47103 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46888 * 240.00045 * 2 1 3 34 34 H 1.09001 * 109.47133 * 120.00363 * 2 1 3 35 35 H 1.09000 * 109.46890 * 64.24613 * 5 3 2 36 36 H 1.09001 * 109.46718 * 304.24806 * 5 3 2 37 37 H 1.09005 * 109.47261 * 55.01411 * 8 6 5 38 38 H 1.09003 * 109.47087 * 175.00925 * 8 6 5 39 39 H 1.08999 * 109.47417 * 295.00679 * 8 6 5 40 40 H 1.08996 * 109.47432 * 305.00259 * 9 6 5 41 41 H 1.09000 * 109.47159 * 65.00795 * 9 6 5 42 42 H 0.96710 * 113.99631 * 180.02562 * 10 9 6 43 43 H 0.97004 * 119.99964 * 265.00075 * 11 3 2 44 44 H 0.97004 * 119.99607 * 359.97438 * 16 14 12 45 45 H 1.07997 * 125.81475 * 359.97438 * 18 17 16 46 46 H 0.97004 * 120.00038 * 179.97438 * 24 23 21 47 47 H 1.08003 * 126.24922 * 359.97059 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4443 0.1257 6 6 4.0662 2.8860 0.2323 7 1 3.6861 3.4659 -0.6088 8 6 5.5959 2.8969 0.2097 9 6 3.5709 3.5025 1.5421 10 8 3.9398 4.8823 1.5884 11 7 1.6524 2.0975 -1.2517 12 6 0.4352 2.6645 -1.3668 13 8 -0.3401 2.6320 -0.4336 14 6 0.0399 3.3316 -2.6427 15 8 0.8152 3.3637 -3.5764 16 7 -1.1775 3.8981 -2.7580 17 6 -1.5487 4.5254 -3.9567 18 6 -0.7535 4.6432 -5.1117 19 7 -1.4403 5.2857 -6.0218 20 7 -2.6918 5.6118 -5.4841 21 6 -3.6951 6.2932 -6.1275 22 1 -4.6257 6.4929 -5.6171 23 6 -3.5132 6.7261 -7.4358 24 7 -2.3821 6.4828 -8.0564 25 14 -4.8779 7.6538 -8.3111 26 1 -6.0421 7.7972 -7.4003 27 1 -4.3883 8.9994 -8.7049 28 1 -5.2887 6.9020 -9.5240 29 6 -2.7374 5.1320 -4.2076 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 4.0025 0.9715 -0.7536 36 1 3.8565 0.8913 1.0186 37 1 5.9498 2.3787 -0.6816 38 1 5.9517 3.9272 0.1962 39 1 5.9761 2.3929 1.0982 40 1 2.4860 3.4143 1.5979 41 1 4.0219 2.9775 2.3842 42 1 3.6578 5.3380 2.3934 43 1 2.2719 2.1232 -1.9977 44 1 -1.7971 3.8721 -2.0121 45 1 0.2515 4.2652 -5.2283 46 1 -2.2552 6.7846 -8.9695 47 1 -3.5674 5.2187 -3.5220 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116338281.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:55 Heat of formation + Delta-G solvation = -76.789697 kcal Electronic energy + Delta-G solvation = -29449.137406 eV Core-core repulsion = 25246.616431 eV Total energy + Delta-G solvation = -4202.520975 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.08389 -41.32268 -39.80677 -38.75430 -37.26087 -36.10106 -35.07381 -34.63582 -33.30477 -32.30015 -29.97578 -29.64928 -27.26643 -27.07405 -25.67026 -24.60853 -22.95810 -22.09565 -21.62611 -21.23881 -20.89692 -19.59754 -19.13669 -18.35428 -17.81265 -17.46240 -17.17859 -16.79905 -16.58996 -16.33321 -15.79225 -15.66690 -15.28416 -15.09467 -15.01047 -14.88714 -14.79923 -14.06263 -14.03732 -13.57978 -13.52716 -13.39162 -13.33615 -13.12975 -12.94673 -12.94148 -12.63778 -12.53246 -12.28078 -12.03058 -11.98941 -11.96122 -11.72785 -11.64525 -11.36396 -11.08778 -10.88083 -10.80545 -10.52611 -10.15173 -10.11492 -8.62797 -8.49603 -6.27290 0.32823 1.28222 1.34562 1.42912 1.59752 1.72203 2.06218 2.11461 2.54384 2.60355 2.95550 3.06974 3.36061 3.52669 3.60508 3.89768 4.06613 4.16750 4.24726 4.35874 4.38569 4.47797 4.51620 4.60158 4.64320 4.72107 4.83097 4.89872 4.95076 4.95445 4.97547 5.03911 5.08958 5.17151 5.19361 5.21683 5.30474 5.35056 5.42274 5.43805 5.50178 5.90365 6.04810 6.25446 6.50315 6.67224 6.85750 6.89164 7.09260 7.40673 7.61989 8.49833 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018654 B = 0.002256 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.667887 B =12409.065927 C =13028.400631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.130 4.130 3 C 0.137 3.863 4 H 0.087 0.913 5 C -0.111 4.111 6 C -0.099 4.099 7 H 0.054 0.946 8 C -0.138 4.138 9 C 0.075 3.925 10 O -0.597 6.597 11 N -0.682 5.682 12 C 0.526 3.474 13 O -0.531 6.531 14 C 0.481 3.519 15 O -0.546 6.546 16 N -0.584 5.584 17 C -0.055 4.055 18 C -0.050 4.050 19 N -0.307 5.307 20 N -0.163 5.163 21 C -0.352 4.352 22 H 0.142 0.858 23 C -0.006 4.006 24 N -0.821 5.821 25 Si 1.020 2.980 26 H -0.241 1.241 27 H -0.272 1.272 28 H -0.272 1.272 29 C -0.076 4.076 30 H 0.052 0.948 31 H 0.029 0.971 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.111 0.889 37 H 0.062 0.938 38 H 0.042 0.958 39 H 0.068 0.932 40 H 0.041 0.959 41 H 0.067 0.933 42 H 0.394 0.606 43 H 0.415 0.585 44 H 0.423 0.577 45 H 0.175 0.825 46 H 0.278 0.722 47 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.576 -10.848 20.363 24.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.168 4.168 3 C 0.034 3.966 4 H 0.105 0.895 5 C -0.149 4.149 6 C -0.118 4.118 7 H 0.072 0.928 8 C -0.196 4.196 9 C -0.003 4.003 10 O -0.405 6.405 11 N -0.335 5.335 12 C 0.306 3.694 13 O -0.408 6.408 14 C 0.263 3.737 15 O -0.424 6.424 16 N -0.228 5.228 17 C -0.162 4.162 18 C -0.225 4.225 19 N -0.139 5.139 20 N 0.069 4.931 21 C -0.483 4.483 22 H 0.159 0.841 23 C -0.218 4.218 24 N -0.449 5.449 25 Si 0.839 3.161 26 H -0.164 1.164 27 H -0.197 1.197 28 H -0.197 1.197 29 C -0.227 4.227 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.119 0.881 35 H 0.109 0.891 36 H 0.130 0.870 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.087 0.913 40 H 0.059 0.941 41 H 0.085 0.915 42 H 0.243 0.757 43 H 0.252 0.748 44 H 0.260 0.740 45 H 0.191 0.809 46 H 0.088 0.912 47 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 9.965 -10.530 18.443 23.459 hybrid contribution -0.731 0.398 0.594 1.022 sum 9.235 -10.132 19.037 23.460 Atomic orbital electron populations 1.21803 0.96526 1.00866 1.01342 1.21977 0.95543 0.95182 1.04093 1.21505 0.96091 0.93622 0.85398 0.89534 1.21920 0.91745 0.95634 1.05597 1.21169 0.97152 0.96283 0.97153 0.92759 1.21716 0.93828 1.01497 1.02528 1.22417 0.98078 0.81811 0.97949 1.86455 1.82610 1.24154 1.47237 1.45850 1.14765 1.54695 1.18192 1.19495 0.83653 0.79551 0.86743 1.90736 1.51423 1.58911 1.39728 1.20497 0.82509 0.81386 0.89263 1.90642 1.51611 1.59344 1.40806 1.42097 1.15561 1.51435 1.13746 1.17300 0.96394 1.13211 0.89279 1.24238 1.01336 1.05036 0.91901 1.78155 0.92312 1.21851 1.21600 1.44851 1.09773 1.31176 1.07319 1.20696 0.95122 1.34433 0.98083 0.84081 1.26897 1.00360 0.97311 0.97225 1.70385 1.25085 1.37213 1.12180 0.84522 0.76688 0.76937 0.77973 1.16392 1.19714 1.19691 1.22000 1.00444 1.09909 0.90345 0.92899 0.95162 0.92492 0.91002 0.88105 0.89121 0.87043 0.91912 0.93929 0.91338 0.94108 0.91506 0.75721 0.74797 0.73992 0.80869 0.91244 0.79529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 8.51 71.98 0.61 -2.24 16 2 C -0.13 -1.74 5.61 30.59 0.17 -1.57 16 3 C 0.14 2.07 2.13 45.00 0.10 2.16 16 4 H 0.09 1.50 5.75 -2.38 -0.01 1.48 16 5 C -0.11 -1.12 4.22 30.60 0.13 -1.00 16 6 C -0.10 -1.50 2.57 -10.80 -0.03 -1.53 16 7 H 0.05 1.14 7.57 -2.39 -0.02 1.13 16 8 C -0.14 -1.92 9.04 71.98 0.65 -1.27 16 9 C 0.07 1.12 6.31 71.98 0.45 1.57 16 10 O -0.60 -11.15 13.28 -148.98 -1.98 -13.13 16 11 N -0.68 -14.64 4.35 -444.01 -1.93 -16.57 16 12 C 0.53 14.96 6.45 87.22 0.56 15.53 16 13 O -0.53 -15.74 13.61 -3.29 -0.04 -15.79 16 14 C 0.48 17.39 7.85 87.22 0.69 18.08 16 15 O -0.55 -22.56 13.62 -3.42 -0.05 -22.60 16 16 N -0.58 -21.92 5.45 -305.33 -1.66 -23.58 16 17 C -0.06 -2.60 6.90 37.83 0.26 -2.34 16 18 C -0.05 -2.69 10.85 85.44 0.93 -1.77 16 19 N -0.31 -18.46 10.39 -56.43 -0.59 -19.05 16 20 N -0.16 -9.08 3.73 -189.98 -0.71 -9.79 16 21 C -0.35 -18.61 10.25 84.02 0.86 -17.75 16 22 H 0.14 6.48 7.83 -2.91 -0.02 6.46 16 23 C -0.01 -0.30 5.50 84.96 0.47 0.16 16 24 N -0.82 -47.06 11.81 21.66 0.26 -46.81 16 25 Si 1.02 38.41 29.55 68.60 2.03 40.44 16 26 H -0.24 -8.15 7.11 99.48 0.71 -7.44 16 27 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 28 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 29 C -0.08 -3.59 11.50 83.41 0.96 -2.63 16 30 H 0.05 1.09 7.85 -2.39 -0.02 1.07 16 31 H 0.03 0.74 5.64 -2.39 -0.01 0.73 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.11 0.58 8.14 -2.39 -0.02 0.57 16 37 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.04 0.76 7.96 -2.39 -0.02 0.74 16 39 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.04 0.66 6.30 -2.39 -0.02 0.64 16 41 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.39 3.98 9.12 -74.05 -0.68 3.31 16 43 H 0.42 8.65 8.07 -92.71 -0.75 7.90 16 44 H 0.42 13.36 8.29 -92.71 -0.77 12.59 16 45 H 0.17 9.25 5.92 -2.91 -0.02 9.23 16 46 H 0.28 14.56 8.31 -92.71 -0.77 13.79 16 47 H 0.19 7.04 8.06 -2.91 -0.02 7.02 16 Total: -1.00 -76.40 386.59 0.97 -75.42 By element: Atomic # 1 Polarization: 47.20 SS G_CDS: -1.16 Total: 46.04 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 6.81 Total: 5.41 kcal Atomic # 7 Polarization: -111.16 SS G_CDS: -4.63 Total: -115.79 kcal Atomic # 8 Polarization: -49.45 SS G_CDS: -2.07 Total: -51.52 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 2.03 Total: 40.44 kcal Total: -76.40 0.97 -75.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116338281.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.368 kcal (2) G-P(sol) polarization free energy of solvation -76.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds