Wall clock time and date at job start Tue Mar 31 2020 21:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47081 * 2 1 4 4 C 1.52994 * 109.46915 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47504 * 304.99757 * 4 3 2 6 6 O 1.42900 * 109.47314 * 65.00339 * 4 3 2 7 7 C 1.53006 * 109.46855 * 185.00343 * 4 3 2 8 8 N 1.46503 * 109.46866 * 180.02562 * 7 4 3 9 9 C 1.34778 * 119.99953 * 179.97438 * 8 7 4 10 10 O 1.21362 * 119.99547 * 359.97438 * 9 8 7 11 11 C 1.49336 * 120.00092 * 179.97438 * 9 8 7 12 12 O 1.21385 * 120.00314 * 359.97438 * 11 9 8 13 13 N 1.34783 * 119.99765 * 180.02562 * 11 9 8 14 14 C 1.39936 * 119.99562 * 179.97438 * 13 11 9 15 15 C 1.40451 * 125.98348 * 0.25270 * 14 13 11 16 16 C 1.35211 * 107.86992 * 180.15188 * 15 14 13 17 17 C 1.50703 * 126.06475 * 179.88161 * 16 15 14 18 18 N 1.34990 * 107.87429 * 359.61498 * 16 15 14 19 19 C 1.46498 * 125.97399 * 180.22149 * 18 16 15 20 20 C 1.50705 * 109.47106 * 90.00158 * 19 18 16 21 21 H 1.08007 * 119.99726 * 359.97438 * 20 19 18 22 22 C 1.37873 * 119.99997 * 180.02562 * 20 19 18 23 23 N 1.31509 * 120.00203 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99703 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47365 * 60.00258 * 24 22 20 26 26 H 1.48503 * 109.46926 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47205 * 299.99687 * 24 22 20 28 28 N 1.31279 * 125.97397 * 179.97438 * 14 13 11 29 29 H 1.09002 * 109.47212 * 299.99821 * 1 2 3 30 30 H 1.09001 * 109.47024 * 60.00047 * 1 2 3 31 31 H 1.09002 * 109.47077 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47212 * 240.00179 * 2 1 3 33 33 H 1.08992 * 109.47062 * 120.00077 * 2 1 3 34 34 H 1.09002 * 109.46952 * 60.00020 * 3 2 1 35 35 H 1.09001 * 109.46755 * 300.00238 * 3 2 1 36 36 H 0.96700 * 113.99959 * 59.99386 * 6 4 3 37 37 H 1.08997 * 109.47411 * 60.00253 * 7 4 3 38 38 H 1.09003 * 109.46972 * 299.99599 * 7 4 3 39 39 H 0.96992 * 120.00407 * 359.97438 * 8 7 4 40 40 H 0.96995 * 119.99893 * 359.97438 * 13 11 9 41 41 H 1.08002 * 126.06845 * 0.02562 * 15 14 13 42 42 H 1.09002 * 109.47152 * 269.68621 * 17 16 15 43 43 H 1.09001 * 109.46980 * 149.68721 * 17 16 15 44 44 H 1.09004 * 109.47113 * 29.68702 * 17 16 15 45 45 H 1.08994 * 109.47370 * 209.99759 * 19 18 16 46 46 H 1.09000 * 109.47366 * 330.00499 * 19 18 16 47 47 H 0.97003 * 120.00421 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 8 4.0468 0.8730 -1.2201 7 6 4.0799 2.8796 0.1265 8 7 5.5449 2.8796 0.1265 9 6 6.2188 4.0424 0.2277 10 8 5.6119 5.0895 0.3185 11 6 7.7122 4.0424 0.2283 12 8 8.3192 2.9951 0.1381 13 7 8.3860 5.2053 0.3301 14 6 9.7854 5.2052 0.3312 15 6 10.6106 4.0733 0.2282 16 6 11.8957 4.4916 0.2710 17 6 13.1176 3.6128 0.1952 18 7 11.8901 5.8364 0.3875 19 6 13.0721 6.6985 0.4636 20 6 13.4790 7.1169 -0.9259 21 1 12.9138 6.7744 -1.7802 22 6 14.5733 7.9359 -1.1066 23 7 15.2617 8.3525 -0.0664 24 14 15.0780 8.4538 -2.8289 25 1 13.9635 9.1979 -3.4687 26 1 16.2761 9.3278 -2.7518 27 1 15.3954 7.2480 -3.6353 28 7 10.5565 6.2636 0.4235 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.7618 1.3473 -2.0131 37 1 3.7162 3.3140 1.0576 38 1 3.7170 3.4689 -0.7156 39 1 6.0300 2.0428 0.0536 40 1 7.9009 6.0421 0.4026 41 1 10.2778 3.0502 0.1339 42 1 13.4119 3.3122 1.2008 43 1 13.9333 4.1642 -0.2724 44 1 12.8915 2.7263 -0.3974 45 1 12.8389 7.5834 1.0557 46 1 13.8905 6.1526 0.9329 47 1 16.0318 8.9285 -0.1935 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116435989.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:53 Heat of formation + Delta-G solvation = -57.626930 kcal Electronic energy + Delta-G solvation = -28183.717374 eV Core-core repulsion = 23982.027359 eV Total energy + Delta-G solvation = -4201.690015 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.12328 -40.32217 -38.99208 -38.21141 -35.47025 -34.69979 -34.44773 -33.38594 -31.50667 -30.92191 -30.56742 -27.51435 -26.68949 -26.42187 -24.74885 -22.91620 -22.39389 -21.86557 -20.95499 -19.92069 -19.65502 -18.12741 -17.16234 -16.95748 -16.74387 -16.61388 -16.05406 -15.98178 -15.36966 -15.27833 -15.04740 -14.58566 -14.51995 -14.28556 -14.07380 -13.89001 -13.74376 -13.11441 -12.94368 -12.50389 -12.41232 -12.39874 -12.30304 -12.20959 -11.95923 -11.83390 -11.48274 -11.45788 -11.33948 -11.17210 -11.10023 -10.83204 -10.56807 -10.56743 -10.26184 -9.97568 -9.62314 -9.59556 -9.57761 -8.65930 -8.03512 -7.57035 -6.27543 -4.35526 1.17918 2.00848 2.63161 3.00613 3.13871 3.22664 3.26660 3.31358 3.65508 3.74782 3.90616 4.00402 4.27050 4.32013 4.38857 4.43299 4.64893 4.67711 4.99361 5.00211 5.06214 5.15784 5.26333 5.31765 5.33253 5.43648 5.58760 5.63545 5.72338 5.81815 5.83909 5.87208 6.05435 6.09647 6.32572 6.40010 6.56826 6.87222 6.88525 7.01306 7.08483 7.28648 7.39492 7.62818 7.64518 7.85669 7.93752 7.98496 8.55376 8.71387 9.31059 10.79798 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.027250 B = 0.001728 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.288598 B =16197.146842 C =16373.444438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.149 4.149 4 C 0.094 3.906 5 H 0.109 0.891 6 O -0.555 6.555 7 C 0.084 3.916 8 N -0.695 5.695 9 C 0.516 3.484 10 O -0.518 6.518 11 C 0.512 3.488 12 O -0.496 6.496 13 N -0.599 5.599 14 C 0.257 3.743 15 C -0.288 4.288 16 C 0.094 3.906 17 C -0.089 4.089 18 N -0.312 5.312 19 C 0.257 3.743 20 C -0.539 4.539 21 H 0.064 0.936 22 C 0.067 3.933 23 N -0.891 5.891 24 Si 0.907 3.093 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.274 1.274 28 N -0.311 5.311 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.378 0.622 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.419 0.581 40 H 0.422 0.578 41 H 0.161 0.839 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.053 0.947 46 H 0.056 0.944 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.313 -16.047 1.194 29.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.188 4.188 4 C 0.035 3.965 5 H 0.126 0.874 6 O -0.361 6.361 7 C -0.039 4.039 8 N -0.349 5.349 9 C 0.296 3.704 10 O -0.393 6.393 11 C 0.291 3.709 12 O -0.369 6.369 13 N -0.247 5.247 14 C 0.004 3.996 15 C -0.319 4.319 16 C -0.038 4.038 17 C -0.147 4.147 18 N -0.095 5.095 19 C 0.140 3.860 20 C -0.577 4.577 21 H 0.083 0.917 22 C -0.137 4.137 23 N -0.529 5.529 24 Si 0.734 3.266 25 H -0.200 1.200 26 H -0.209 1.209 27 H -0.199 1.199 28 N -0.142 5.142 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.226 0.774 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.256 0.744 40 H 0.260 0.740 41 H 0.178 0.822 42 H 0.090 0.910 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.769 -15.003 1.790 28.165 hybrid contribution -0.070 0.217 -1.287 1.307 sum -23.839 -14.786 0.503 28.057 Atomic orbital electron populations 1.21789 0.95783 1.01781 1.01785 1.21452 0.95686 0.95887 1.02819 1.22255 0.94615 0.98432 1.03453 1.22241 0.93469 0.92139 0.88680 0.87351 1.86628 1.76900 1.56992 1.15537 1.22255 0.79532 0.98339 1.03821 1.45568 1.07170 1.09594 1.72611 1.19916 0.88004 0.84488 0.77985 1.90792 1.69747 1.31104 1.47685 1.19883 0.88070 0.83996 0.78912 1.90724 1.68906 1.30952 1.46315 1.41998 1.03376 1.10198 1.69141 1.18892 0.82869 0.93633 1.04169 1.21242 0.89917 0.99725 1.21026 1.21082 0.96670 0.85483 1.00559 1.20394 0.94000 0.97801 1.02555 1.49081 1.04341 1.04730 1.51327 1.19737 0.77505 0.89695 0.99073 1.21279 1.13099 1.31568 0.91788 0.91742 1.24918 0.95684 0.95190 0.97881 1.69905 1.18946 1.34268 1.29739 0.86405 0.78027 0.78726 0.83474 1.19974 1.20932 1.19910 1.77332 0.88274 1.19950 1.28600 0.92765 0.92764 0.92645 0.91169 0.91892 0.90526 0.91096 0.77441 0.89854 0.90477 0.74359 0.74036 0.82198 0.90965 0.89795 0.90514 0.92856 0.92626 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.91 37.16 0.37 -0.25 16 2 C -0.12 -0.52 5.83 -26.73 -0.16 -0.68 16 3 C -0.15 -0.55 4.89 -26.73 -0.13 -0.68 16 4 C 0.09 0.45 3.05 -26.73 -0.08 0.37 16 5 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 6 O -0.56 -3.26 12.62 -35.23 -0.44 -3.70 16 7 C 0.08 0.54 5.34 -4.04 -0.02 0.51 16 8 N -0.69 -6.27 5.44 -60.76 -0.33 -6.60 16 9 C 0.52 6.35 7.89 -11.64 -0.09 6.26 16 10 O -0.52 -7.31 16.48 5.49 0.09 -7.22 16 11 C 0.51 7.58 7.85 -11.64 -0.09 7.49 16 12 O -0.50 -8.03 13.60 5.47 0.07 -7.95 16 13 N -0.60 -9.90 5.43 -11.58 -0.06 -9.97 16 14 C 0.26 5.23 8.10 -154.54 -1.25 3.98 16 15 C -0.29 -5.76 9.51 -39.83 -0.38 -6.14 16 16 C 0.09 1.93 6.92 -82.28 -0.57 1.36 16 17 C -0.09 -1.48 9.89 36.01 0.36 -1.12 16 18 N -0.31 -7.33 3.59 -58.33 -0.21 -7.54 16 19 C 0.26 6.54 5.81 -5.19 -0.03 6.50 16 20 C -0.54 -14.73 9.39 -34.44 -0.32 -15.05 16 21 H 0.06 1.81 7.81 -52.48 -0.41 1.40 16 22 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 23 N -0.89 -24.84 13.29 55.43 0.74 -24.11 16 24 Si 0.91 21.01 29.54 -169.99 -5.02 15.99 16 25 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 28 N -0.31 -7.20 12.60 31.41 0.40 -6.80 16 29 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.35 7.82 -51.93 -0.41 -0.05 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 36 H 0.38 1.19 9.05 45.56 0.41 1.60 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.42 3.64 7.82 -40.82 -0.32 3.32 16 40 H 0.42 6.33 8.29 -40.82 -0.34 5.99 16 41 H 0.16 3.02 5.91 -52.49 -0.31 2.71 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.08 1.50 7.71 -51.93 -0.40 1.10 16 44 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.05 1.44 8.14 -51.93 -0.42 1.02 16 46 H 0.06 1.39 7.65 -51.93 -0.40 0.99 16 47 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 401.82 15.07 6.06 6.06 Total: -1.00 -32.59 401.82 -7.59 -40.19 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -6.38 Total: 7.38 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -2.50 Total: 4.28 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: 0.53 Total: -55.01 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.28 Total: -18.88 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.59 -7.59 -40.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116435989.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.439 kcal (2) G-P(sol) polarization free energy of solvation -32.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds