Wall clock time and date at job start Tue Mar 31 2020 21:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47081 * 2 1 4 4 C 1.52994 * 109.46915 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47504 * 304.99757 * 4 3 2 6 6 O 1.42900 * 109.47314 * 65.00339 * 4 3 2 7 7 C 1.53006 * 109.46855 * 185.00343 * 4 3 2 8 8 N 1.46503 * 109.46866 * 180.02562 * 7 4 3 9 9 C 1.34778 * 119.99953 * 179.97438 * 8 7 4 10 10 O 1.21362 * 119.99547 * 359.97438 * 9 8 7 11 11 C 1.49336 * 120.00092 * 179.97438 * 9 8 7 12 12 O 1.21385 * 120.00314 * 359.97438 * 11 9 8 13 13 N 1.34783 * 119.99765 * 180.02562 * 11 9 8 14 14 C 1.39936 * 119.99562 * 179.97438 * 13 11 9 15 15 C 1.40451 * 125.98348 * 0.25270 * 14 13 11 16 16 C 1.35211 * 107.86992 * 180.15188 * 15 14 13 17 17 C 1.50703 * 126.06475 * 179.88161 * 16 15 14 18 18 N 1.34990 * 107.87429 * 359.61498 * 16 15 14 19 19 C 1.46498 * 125.97399 * 180.22149 * 18 16 15 20 20 C 1.50705 * 109.47106 * 90.00158 * 19 18 16 21 21 H 1.08007 * 119.99726 * 359.97438 * 20 19 18 22 22 C 1.37873 * 119.99997 * 180.02562 * 20 19 18 23 23 N 1.31509 * 120.00203 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99703 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47365 * 60.00258 * 24 22 20 26 26 H 1.48503 * 109.46926 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47205 * 299.99687 * 24 22 20 28 28 N 1.31279 * 125.97397 * 179.97438 * 14 13 11 29 29 H 1.09002 * 109.47212 * 299.99821 * 1 2 3 30 30 H 1.09001 * 109.47024 * 60.00047 * 1 2 3 31 31 H 1.09002 * 109.47077 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47212 * 240.00179 * 2 1 3 33 33 H 1.08992 * 109.47062 * 120.00077 * 2 1 3 34 34 H 1.09002 * 109.46952 * 60.00020 * 3 2 1 35 35 H 1.09001 * 109.46755 * 300.00238 * 3 2 1 36 36 H 0.96700 * 113.99959 * 59.99386 * 6 4 3 37 37 H 1.08997 * 109.47411 * 60.00253 * 7 4 3 38 38 H 1.09003 * 109.46972 * 299.99599 * 7 4 3 39 39 H 0.96992 * 120.00407 * 359.97438 * 8 7 4 40 40 H 0.96995 * 119.99893 * 359.97438 * 13 11 9 41 41 H 1.08002 * 126.06845 * 0.02562 * 15 14 13 42 42 H 1.09002 * 109.47152 * 269.68621 * 17 16 15 43 43 H 1.09001 * 109.46980 * 149.68721 * 17 16 15 44 44 H 1.09004 * 109.47113 * 29.68702 * 17 16 15 45 45 H 1.08994 * 109.47370 * 209.99759 * 19 18 16 46 46 H 1.09000 * 109.47366 * 330.00499 * 19 18 16 47 47 H 0.97003 * 120.00421 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 8 4.0468 0.8730 -1.2201 7 6 4.0799 2.8796 0.1265 8 7 5.5449 2.8796 0.1265 9 6 6.2188 4.0424 0.2277 10 8 5.6119 5.0895 0.3185 11 6 7.7122 4.0424 0.2283 12 8 8.3192 2.9951 0.1381 13 7 8.3860 5.2053 0.3301 14 6 9.7854 5.2052 0.3312 15 6 10.6106 4.0733 0.2282 16 6 11.8957 4.4916 0.2710 17 6 13.1176 3.6128 0.1952 18 7 11.8901 5.8364 0.3875 19 6 13.0721 6.6985 0.4636 20 6 13.4790 7.1169 -0.9259 21 1 12.9138 6.7744 -1.7802 22 6 14.5733 7.9359 -1.1066 23 7 15.2617 8.3525 -0.0664 24 14 15.0780 8.4538 -2.8289 25 1 13.9635 9.1979 -3.4687 26 1 16.2761 9.3278 -2.7518 27 1 15.3954 7.2480 -3.6353 28 7 10.5565 6.2636 0.4235 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.7618 1.3473 -2.0131 37 1 3.7162 3.3140 1.0576 38 1 3.7170 3.4689 -0.7156 39 1 6.0300 2.0428 0.0536 40 1 7.9009 6.0421 0.4026 41 1 10.2778 3.0502 0.1339 42 1 13.4119 3.3122 1.2008 43 1 13.9333 4.1642 -0.2724 44 1 12.8915 2.7263 -0.3974 45 1 12.8389 7.5834 1.0557 46 1 13.8905 6.1526 0.9329 47 1 16.0318 8.9285 -0.1935 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116435989.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:52 Heat of formation + Delta-G solvation = -82.082164 kcal Electronic energy + Delta-G solvation = -28184.777832 eV Core-core repulsion = 23982.027359 eV Total energy + Delta-G solvation = -4202.750473 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.52260 -41.60032 -39.91964 -38.96384 -36.73068 -35.64303 -35.19712 -34.97221 -33.08143 -32.67573 -31.10071 -28.92520 -27.92726 -27.77427 -25.91990 -24.59539 -23.00485 -22.47015 -21.91303 -21.41125 -20.91134 -19.36173 -18.78947 -18.18388 -17.57549 -17.48470 -17.36374 -16.95519 -16.92646 -16.32049 -16.14178 -15.92766 -15.56092 -15.24480 -14.96020 -14.83493 -14.75037 -14.32409 -14.13285 -13.84008 -13.68297 -13.64913 -13.53427 -13.17506 -12.99428 -12.72731 -12.69606 -12.67210 -12.61427 -12.25420 -12.19093 -12.17100 -11.69398 -11.59336 -11.48749 -11.44527 -11.06990 -10.74860 -10.71072 -10.39954 -9.66825 -9.24386 -8.33480 -6.50868 0.02793 0.83475 1.06843 1.38655 1.40290 1.48979 1.69972 1.80584 2.22956 2.33576 2.55147 2.96982 3.20490 3.48127 3.58206 3.80498 3.96479 4.08070 4.09854 4.26429 4.32963 4.41878 4.59977 4.65062 4.65813 4.71565 4.78719 4.82522 4.89766 4.93909 4.96481 4.96994 5.06361 5.08846 5.09549 5.20349 5.29903 5.40747 5.50980 5.52727 5.78420 5.79760 5.81609 6.14262 6.22177 6.53587 6.60542 6.75204 6.82677 6.93374 7.20133 8.72728 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.027250 B = 0.001728 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.288598 B =16197.146842 C =16373.444438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.144 4.144 4 C 0.104 3.896 5 H 0.109 0.891 6 O -0.570 6.570 7 C 0.082 3.918 8 N -0.677 5.677 9 C 0.524 3.476 10 O -0.537 6.537 11 C 0.515 3.485 12 O -0.507 6.507 13 N -0.600 5.600 14 C 0.266 3.734 15 C -0.293 4.293 16 C 0.091 3.909 17 C -0.086 4.086 18 N -0.338 5.338 19 C 0.274 3.726 20 C -0.556 4.556 21 H 0.050 0.950 22 C 0.025 3.975 23 N -0.917 5.917 24 Si 0.970 3.030 25 H -0.277 1.277 26 H -0.273 1.273 27 H -0.264 1.264 28 N -0.353 5.353 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.389 0.611 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.423 0.577 40 H 0.428 0.572 41 H 0.175 0.825 42 H 0.095 0.905 43 H 0.067 0.933 44 H 0.105 0.895 45 H 0.025 0.975 46 H 0.056 0.944 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.458 -17.476 0.376 30.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.182 4.182 4 C 0.044 3.956 5 H 0.126 0.874 6 O -0.378 6.378 7 C -0.041 4.041 8 N -0.330 5.330 9 C 0.303 3.697 10 O -0.414 6.414 11 C 0.296 3.704 12 O -0.380 6.380 13 N -0.250 5.250 14 C 0.012 3.988 15 C -0.323 4.323 16 C -0.039 4.039 17 C -0.144 4.144 18 N -0.120 5.120 19 C 0.155 3.845 20 C -0.594 4.594 21 H 0.068 0.932 22 C -0.176 4.176 23 N -0.555 5.555 24 Si 0.794 3.206 25 H -0.203 1.203 26 H -0.197 1.197 27 H -0.189 1.189 28 N -0.184 5.184 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.239 0.761 37 H 0.108 0.892 38 H 0.102 0.898 39 H 0.261 0.739 40 H 0.267 0.733 41 H 0.192 0.808 42 H 0.113 0.887 43 H 0.086 0.914 44 H 0.124 0.876 45 H 0.043 0.957 46 H 0.074 0.926 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -24.955 -16.480 0.970 29.921 hybrid contribution 0.152 0.542 -1.004 1.151 sum -24.802 -15.938 -0.034 29.482 Atomic orbital electron populations 1.21787 0.95534 1.01807 1.02002 1.21430 0.95884 0.96171 1.02294 1.22207 0.93575 0.98163 1.04236 1.22179 0.94078 0.90861 0.88452 0.87361 1.86607 1.77265 1.57580 1.16342 1.22503 0.77458 0.99686 1.04425 1.45604 1.08371 1.08545 1.70472 1.19390 0.86469 0.85189 0.78608 1.90797 1.69463 1.31878 1.49272 1.20429 0.89294 0.83122 0.77577 1.90700 1.69585 1.31227 1.46471 1.42121 1.01901 1.11339 1.69618 1.19198 0.84423 0.93173 1.02010 1.21462 0.89623 1.00147 1.21116 1.21807 0.98461 0.84694 0.98968 1.20533 0.91743 0.97786 1.04359 1.48863 1.03991 1.05575 1.53611 1.19295 0.78350 0.89043 0.97794 1.21412 1.13501 1.32342 0.92143 0.93153 1.25706 0.95407 0.94831 1.01703 1.69988 1.19289 1.34551 1.31638 0.85427 0.77727 0.78645 0.78822 1.20265 1.19741 1.18891 1.77247 0.88597 1.21608 1.30943 0.92495 0.92583 0.92773 0.91983 0.92151 0.89782 0.90305 0.76133 0.89247 0.89844 0.73932 0.73325 0.80762 0.88685 0.91396 0.87600 0.95725 0.92641 0.91706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 71.98 0.71 -0.29 16 2 C -0.12 -0.85 5.83 30.60 0.18 -0.67 16 3 C -0.14 -0.75 4.89 30.59 0.15 -0.60 16 4 C 0.10 0.77 3.05 30.59 0.09 0.86 16 5 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 6 O -0.57 -5.58 12.62 -148.98 -1.88 -7.46 16 7 C 0.08 0.86 5.34 86.38 0.46 1.32 16 8 N -0.68 -10.88 5.44 -464.51 -2.53 -13.41 16 9 C 0.52 12.14 7.89 87.23 0.69 12.83 16 10 O -0.54 -14.45 16.48 -3.29 -0.05 -14.51 16 11 C 0.51 14.71 7.85 87.23 0.69 15.40 16 12 O -0.51 -15.66 13.60 -3.35 -0.05 -15.70 16 13 N -0.60 -19.67 5.43 -308.89 -1.68 -21.35 16 14 C 0.27 10.86 8.10 133.40 1.08 11.94 16 15 C -0.29 -11.51 9.51 22.11 0.21 -11.30 16 16 C 0.09 3.73 6.92 41.38 0.29 4.02 16 17 C -0.09 -2.74 9.89 71.24 0.70 -2.04 16 18 N -0.34 -16.24 3.59 -338.45 -1.22 -17.45 16 19 C 0.27 14.41 5.81 85.64 0.50 14.90 16 20 C -0.56 -31.04 9.39 25.60 0.24 -30.80 16 21 H 0.05 2.90 7.81 -2.91 -0.02 2.87 16 22 C 0.02 1.35 5.46 84.65 0.46 1.81 16 23 N -0.92 -51.56 13.29 21.45 0.28 -51.28 16 24 Si 0.97 42.94 29.54 68.60 2.03 44.97 16 25 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 27 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 28 N -0.35 -16.79 12.60 -54.54 -0.69 -17.48 16 29 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.05 0.36 8.14 -2.39 -0.02 0.35 16 32 H 0.06 0.55 7.82 -2.39 -0.02 0.53 16 33 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 36 H 0.39 1.67 9.05 -74.06 -0.67 1.00 16 37 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.42 6.47 7.82 -92.71 -0.72 5.74 16 40 H 0.43 12.87 8.29 -92.71 -0.77 12.10 16 41 H 0.18 6.29 5.91 -2.91 -0.02 6.27 16 42 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 43 H 0.07 2.39 7.71 -2.39 -0.02 2.38 16 44 H 0.11 2.72 8.14 -2.38 -0.02 2.70 16 45 H 0.02 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.06 2.86 7.65 -2.39 -0.02 2.84 16 47 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -70.15 401.82 -0.47 -70.62 By element: Atomic # 1 Polarization: 26.81 SS G_CDS: -1.14 Total: 25.67 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: 6.45 Total: 17.39 kcal Atomic # 7 Polarization: -115.14 SS G_CDS: -5.82 Total: -120.97 kcal Atomic # 8 Polarization: -35.69 SS G_CDS: -1.98 Total: -37.67 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -70.15 -0.47 -70.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116435989.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.464 kcal (2) G-P(sol) polarization free energy of solvation -70.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds