Wall clock time and date at job start Tue Mar 31 2020 21:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36007 * 117.00440 * 2 1 4 4 N 1.31043 * 125.88816 * 359.97438 * 3 2 1 5 5 N 1.40058 * 108.37972 * 180.02562 * 4 3 2 6 6 C 1.46501 * 126.00030 * 180.02562 * 5 4 3 7 7 C 1.35807 * 108.00365 * 359.77481 * 5 4 3 8 8 C 1.35777 * 107.62942 * 0.36263 * 7 5 4 9 9 N 1.40555 * 126.11669 * 179.89743 * 8 7 5 10 10 C 1.34777 * 119.99842 * 359.69142 * 9 8 7 11 11 O 1.21409 * 119.99817 * 0.02562 * 10 9 8 12 12 C 1.49316 * 120.00188 * 179.97438 * 10 9 8 13 13 O 1.21368 * 119.99450 * 0.02562 * 12 10 9 14 14 N 1.34777 * 120.00192 * 180.02562 * 12 10 9 15 15 C 1.46496 * 119.99875 * 180.02562 * 14 12 10 16 16 C 1.53002 * 109.47037 * 179.97438 * 15 14 12 17 17 C 1.52997 * 109.46817 * 299.99555 * 16 15 14 18 18 C 1.52997 * 109.47415 * 59.99682 * 16 15 14 19 19 C 1.52996 * 109.46972 * 179.97438 * 16 15 14 20 20 C 1.50702 * 109.47218 * 179.97438 * 19 16 15 21 21 H 1.08003 * 119.99606 * 0.02562 * 20 19 16 22 22 C 1.37874 * 120.00627 * 179.97438 * 20 19 16 23 23 N 1.31516 * 119.99500 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00390 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46950 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46931 * 119.99838 * 24 22 20 27 27 H 1.48500 * 109.47074 * 240.00166 * 24 22 20 28 28 H 1.09000 * 109.47064 * 60.00518 * 1 2 3 29 29 H 1.09002 * 109.47247 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47134 * 300.00725 * 1 2 3 31 31 H 1.08997 * 109.46881 * 89.97536 * 6 5 4 32 32 H 1.08999 * 109.47108 * 209.97531 * 6 5 4 33 33 H 1.09002 * 109.46745 * 329.97680 * 6 5 4 34 34 H 1.07995 * 126.18081 * 180.22969 * 7 5 4 35 35 H 0.96999 * 120.00111 * 179.69410 * 9 8 7 36 36 H 0.96999 * 120.00043 * 359.97438 * 14 12 10 37 37 H 1.09000 * 109.46876 * 299.99570 * 15 14 12 38 38 H 1.08996 * 109.47565 * 59.99371 * 15 14 12 39 39 H 1.09002 * 109.47153 * 60.00231 * 17 16 15 40 40 H 1.09001 * 109.47289 * 180.02562 * 17 16 15 41 41 H 1.09004 * 109.47261 * 300.00059 * 17 16 15 42 42 H 1.09000 * 109.47140 * 59.99976 * 18 16 15 43 43 H 1.08998 * 109.47624 * 180.02562 * 18 16 15 44 44 H 1.09002 * 109.47045 * 300.00068 * 18 16 15 45 45 H 1.08999 * 109.47631 * 299.99210 * 19 16 15 46 46 H 1.09000 * 109.47380 * 60.00304 * 19 16 15 47 47 H 0.97002 * 119.99804 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 7 1.4494 2.3783 -0.0005 5 7 2.4313 3.3770 -0.0009 6 6 2.1899 4.8220 -0.0009 7 6 3.6466 2.7709 0.0044 8 6 3.4371 1.4294 -0.0001 9 7 4.4310 0.4356 0.0010 10 6 5.7328 0.7845 0.0007 11 8 6.0469 1.9573 0.0000 12 6 6.7888 -0.2712 0.0024 13 8 6.4747 -1.4435 0.0036 14 7 8.0906 0.0778 0.0026 15 6 9.1265 -0.9580 0.0038 16 6 10.5071 -0.2985 0.0032 17 6 10.6564 0.5707 -1.2470 18 6 10.6564 0.5735 1.2514 19 6 11.5891 -1.3802 0.0050 20 6 12.9489 -0.7307 0.0037 21 1 13.0330 0.3460 0.0023 22 6 14.0857 -1.5109 0.0055 23 7 13.9833 -2.8220 0.0079 24 14 15.7713 -0.7057 0.0033 25 1 15.6144 0.7710 0.0002 26 1 16.5198 -1.1209 1.2168 27 1 16.5195 -1.1270 -1.2083 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5140 0.8900 31 1 2.1299 5.1803 1.0267 32 1 3.0078 5.3270 -0.5147 33 1 1.2522 5.0336 -0.5149 34 1 4.6062 3.2663 0.0091 35 1 4.1800 -0.5014 0.0019 36 1 8.3415 1.0148 0.0013 37 1 9.0199 -1.5775 0.8942 38 1 9.0205 -1.5790 -0.8857 39 1 9.8856 1.3414 -1.2479 40 1 11.6401 1.0403 -1.2478 41 1 10.5501 -0.0505 -2.1364 42 1 10.5500 -0.0458 2.1421 43 1 11.6397 1.0437 1.2508 44 1 9.8856 1.3442 1.2505 45 1 11.4826 -1.9992 0.8958 46 1 11.4830 -2.0018 -0.8842 47 1 14.7830 -3.3710 0.0095 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117423645.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:27 Heat of formation + Delta-G solvation = -28.000578 kcal Electronic energy + Delta-G solvation = -28938.417259 eV Core-core repulsion = 24738.011939 eV Total energy + Delta-G solvation = -4200.405320 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.90761 -40.51798 -38.76013 -38.49100 -37.18072 -35.31783 -33.64213 -32.70681 -32.09392 -29.89364 -28.28226 -27.41505 -26.85409 -26.52103 -26.10406 -24.30704 -22.79380 -21.84193 -21.28323 -20.09743 -19.20737 -18.27053 -17.34075 -17.21088 -16.68816 -16.44309 -16.29848 -15.91717 -15.49176 -15.35225 -15.24412 -14.90872 -14.49883 -14.49299 -13.98144 -13.51448 -13.42819 -13.13692 -13.13426 -13.08649 -12.79754 -12.31307 -12.19340 -12.08133 -11.60272 -11.55247 -11.19570 -11.17332 -11.13166 -11.03352 -10.83934 -10.65869 -10.45109 -10.26305 -9.91399 -9.72288 -9.29969 -9.20081 -8.95921 -8.94065 -8.37406 -8.01133 -6.01348 -4.02474 1.17911 1.52939 1.82679 2.30711 2.44134 2.92260 3.27335 3.29909 3.38165 3.40610 3.62672 4.14505 4.43228 4.46718 4.67666 4.78521 4.79164 4.90006 4.98479 5.03571 5.17167 5.23182 5.34366 5.38345 5.40790 5.56056 5.71984 5.96991 6.14729 6.15229 6.18959 6.35239 6.37336 6.60957 6.62316 6.67476 6.84683 6.87493 7.03290 7.05702 7.08952 7.26129 7.39755 7.61826 7.68805 7.73327 7.97181 8.03937 8.39029 9.02380 9.60843 11.10093 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.026275 B = 0.001953 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.382285 B =14329.899832 C =15188.315786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.291 6.291 3 C 0.258 3.742 4 N -0.331 5.331 5 N -0.367 5.367 6 C 0.111 3.889 7 C 0.074 3.926 8 C -0.013 4.013 9 N -0.605 5.605 10 C 0.506 3.494 11 O -0.519 6.519 12 C 0.506 3.494 13 O -0.523 6.523 14 N -0.684 5.684 15 C 0.124 3.876 16 C -0.073 4.073 17 C -0.130 4.130 18 C -0.130 4.130 19 C 0.036 3.964 20 C -0.510 4.510 21 H 0.061 0.939 22 C 0.055 3.945 23 N -0.894 5.894 24 Si 0.889 3.111 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.285 1.285 28 H 0.058 0.942 29 H 0.102 0.898 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.209 0.791 35 H 0.428 0.572 36 H 0.411 0.589 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.031 0.969 40 H 0.069 0.931 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.069 0.931 44 H 0.031 0.969 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.129 12.670 -0.080 29.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.195 6.195 3 C 0.051 3.949 4 N -0.170 5.170 5 N -0.156 5.156 6 C -0.030 4.030 7 C -0.073 4.073 8 C -0.118 4.118 9 N -0.251 5.251 10 C 0.288 3.712 11 O -0.395 6.395 12 C 0.285 3.715 13 O -0.400 6.400 14 N -0.337 5.337 15 C 0.002 3.998 16 C -0.073 4.073 17 C -0.187 4.187 18 C -0.187 4.187 19 C -0.001 4.001 20 C -0.549 4.549 21 H 0.079 0.921 22 C -0.146 4.146 23 N -0.534 5.534 24 Si 0.717 3.283 25 H -0.198 1.198 26 H -0.212 1.212 27 H -0.211 1.211 28 H 0.076 0.924 29 H 0.120 0.880 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.226 0.774 35 H 0.266 0.734 36 H 0.249 0.751 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.050 0.950 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.088 0.912 44 H 0.050 0.950 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -27.011 12.862 -0.083 29.917 hybrid contribution 1.440 -0.067 0.017 1.442 sum -25.571 12.794 -0.066 28.593 Atomic orbital electron populations 1.22986 0.77021 1.03758 1.02180 1.86286 1.22622 1.21002 1.89602 1.20202 0.89305 0.85887 0.99474 1.77300 1.13950 0.94300 1.31453 1.47784 1.02709 1.05848 1.59268 1.21878 1.04230 0.73306 1.03590 1.23100 0.91596 0.91203 1.01365 1.16960 0.85405 0.88837 1.20596 1.42468 1.03195 1.09960 1.69523 1.20387 0.83390 0.89420 0.77968 1.90594 1.81654 1.18836 1.48438 1.19645 0.84109 0.88323 0.79442 1.90788 1.81986 1.18383 1.48832 1.46034 1.04498 1.12500 1.70660 1.21864 0.86035 0.89378 1.02506 1.20934 0.92970 0.98038 0.95375 1.21794 1.01383 0.98419 0.97141 1.21793 1.01382 0.98402 0.97157 1.19102 0.91307 0.92154 0.97586 1.21215 0.90518 0.92967 1.50177 0.92134 1.25019 0.99183 0.94814 0.95555 1.69973 1.28819 1.03643 1.50921 0.86581 0.84603 0.79560 0.77511 1.19777 1.21156 1.21149 0.92377 0.87971 0.92384 0.90593 0.88924 0.89225 0.77449 0.73408 0.75106 0.90997 0.91003 0.95011 0.91231 0.93248 0.93243 0.91236 0.95019 0.96227 0.96231 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.69 101.05 1.08 1.33 16 2 O -0.29 -3.07 10.58 -19.76 -0.21 -3.28 16 3 C 0.26 3.02 7.91 -16.94 -0.13 2.89 16 4 N -0.33 -3.70 11.95 30.65 0.37 -3.34 16 5 N -0.37 -3.44 4.04 -67.81 -0.27 -3.71 16 6 C 0.11 0.51 11.48 59.85 0.69 1.20 16 7 C 0.07 0.79 10.37 -16.67 -0.17 0.61 16 8 C -0.01 -0.16 6.96 -83.79 -0.58 -0.74 16 9 N -0.61 -7.29 5.46 -10.38 -0.06 -7.34 16 10 C 0.51 6.66 7.86 -11.65 -0.09 6.57 16 11 O -0.52 -7.01 13.63 5.45 0.07 -6.93 16 12 C 0.51 7.45 7.88 -11.65 -0.09 7.36 16 13 O -0.52 -8.84 16.48 5.48 0.09 -8.75 16 14 N -0.68 -10.00 4.95 -60.78 -0.30 -10.30 16 15 C 0.12 2.09 4.56 -4.04 -0.02 2.08 16 16 C -0.07 -1.34 0.54 -154.51 -0.08 -1.43 16 17 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 18 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 19 C 0.04 0.86 4.04 -27.88 -0.11 0.75 16 20 C -0.51 -13.33 7.65 -34.44 -0.26 -13.60 16 21 H 0.06 1.53 5.68 -52.48 -0.30 1.23 16 22 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 23 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 24 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.21 2.07 5.84 -52.49 -0.31 1.77 16 35 H 0.43 4.85 8.29 -40.82 -0.34 4.51 16 36 H 0.41 5.56 5.63 -40.82 -0.23 5.33 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 40 H 0.07 1.30 6.62 -51.93 -0.34 0.95 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.07 1.30 6.62 -51.93 -0.34 0.95 16 44 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 391.15 15.07 5.89 5.89 Total: -1.00 -32.34 391.15 -4.76 -37.11 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.78 Total: 5.46 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 0.72 Total: 4.53 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: 0.47 Total: -50.03 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.04 Total: -18.96 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.34 -4.76 -37.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117423645.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.108 kcal (2) G-P(sol) polarization free energy of solvation -32.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds