Wall clock time and date at job start Tue Mar 31 2020 20:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47179 * 2 1 4 4 C 1.53003 * 109.46924 * 240.00020 * 2 1 3 5 5 C 1.50706 * 109.46922 * 119.99839 * 2 1 3 6 6 N 1.29933 * 125.37374 * 60.30792 * 5 2 1 7 7 C 1.36069 * 108.47139 * 180.19705 * 6 5 2 8 8 C 1.47426 * 126.44720 * 179.82133 * 7 6 5 9 9 O 1.21609 * 119.99771 * 179.71333 * 8 7 6 10 10 N 1.34776 * 119.99992 * 359.71293 * 8 7 6 11 11 C 1.46496 * 120.00278 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47440 * 180.02562 * 11 10 8 13 13 N 1.46896 * 109.46872 * 180.02562 * 12 11 10 14 14 C 1.46901 * 110.99875 * 180.02562 * 13 12 11 15 15 C 1.50694 * 109.47408 * 179.97438 * 14 13 12 16 16 O 1.21292 * 120.00177 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00293 * 179.97438 * 15 14 13 18 18 C 1.37093 * 120.00007 * 180.02562 * 17 15 14 19 19 H 1.07998 * 120.00378 * 359.97438 * 18 17 15 20 20 C 1.38956 * 119.99921 * 180.02562 * 18 17 15 21 21 N 1.31411 * 119.99738 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00262 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47187 * 89.99751 * 22 20 18 24 24 H 1.48501 * 109.47351 * 210.00168 * 22 20 18 25 25 H 1.48500 * 109.47020 * 329.99981 * 22 20 18 26 26 C 1.36090 * 107.10537 * 359.56219 * 7 6 5 27 27 O 1.34042 * 125.37944 * 240.01905 * 5 2 1 28 28 H 1.09009 * 109.47083 * 300.00172 * 1 2 3 29 29 H 1.09003 * 109.47189 * 59.99535 * 1 2 3 30 30 H 1.08996 * 109.47403 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47045 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47442 * 299.99754 * 3 2 1 33 33 H 1.09001 * 109.47405 * 60.00216 * 3 2 1 34 34 H 1.08996 * 109.46863 * 300.00064 * 4 2 1 35 35 H 1.08995 * 109.46982 * 59.99927 * 4 2 1 36 36 H 1.09004 * 109.46546 * 180.02562 * 4 2 1 37 37 H 0.97003 * 119.99512 * 0.02562 * 10 8 7 38 38 H 1.09003 * 109.47006 * 300.00513 * 11 10 8 39 39 H 1.09001 * 109.46897 * 60.00357 * 11 10 8 40 40 H 1.08990 * 109.47112 * 300.00328 * 12 11 10 41 41 H 1.09001 * 109.46825 * 60.00262 * 12 11 10 42 42 H 1.00890 * 111.00344 * 56.05138 * 13 12 11 43 43 H 1.09003 * 109.46868 * 300.00319 * 14 13 12 44 44 H 1.09005 * 109.47388 * 60.00038 * 14 13 12 45 45 H 0.96998 * 119.99487 * 359.97438 * 17 15 14 46 46 H 0.97005 * 120.00296 * 180.02562 * 21 20 18 47 47 H 1.07998 * 126.52864 * 180.25961 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7104 1.2305 6 7 1.7882 -1.9495 1.5360 7 6 2.4033 -2.2317 2.7165 8 6 2.3822 -3.5224 3.4285 9 8 2.9807 -3.6468 4.4798 10 7 1.6996 -4.5646 2.9143 11 6 1.6790 -5.8474 3.6215 12 6 0.8404 -6.8529 2.8298 13 7 0.8194 -8.1390 3.5393 14 6 0.0221 -9.1315 2.8065 15 6 0.0241 -10.4350 3.5626 16 8 0.6298 -10.5280 4.6094 17 7 -0.6479 -11.4973 3.0763 18 6 -0.6464 -12.6830 3.7645 19 1 -0.1064 -12.7660 4.6961 20 6 -1.3388 -13.7783 3.2629 21 7 -1.9955 -13.6775 2.1291 22 14 -1.3363 -15.3941 4.2002 23 1 -2.4798 -15.4189 5.1472 24 1 -1.4621 -16.5221 3.2425 25 1 -0.0648 -15.5259 4.9559 26 6 3.0463 -1.0998 3.1134 27 8 2.8059 -0.1654 2.1799 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2492 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7216 -1.2490 37 1 1.2225 -4.4654 2.0756 38 1 2.6973 -6.2233 3.7219 39 1 1.2433 -5.7098 4.6111 40 1 -0.1777 -6.4772 2.7291 41 1 1.2766 -6.9904 1.8404 42 1 0.4789 -8.0262 4.4823 43 1 -1.0018 -8.7716 2.7048 44 1 0.4531 -9.2852 1.8171 45 1 -1.1332 -11.4226 2.2398 46 1 -2.4792 -14.4420 1.7790 47 1 3.6375 -0.9768 4.0088 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127172557.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:24 Heat of formation + Delta-G solvation = -91.173433 kcal Electronic energy + Delta-G solvation = -27692.090590 eV Core-core repulsion = 23488.945890 eV Total energy + Delta-G solvation = -4203.144700 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.56611 -40.72900 -40.14965 -37.96257 -37.53210 -36.04446 -35.91114 -35.19570 -33.27224 -31.25582 -30.44276 -28.27983 -28.21740 -27.79641 -25.98464 -24.73307 -24.21383 -23.07162 -21.83286 -21.10703 -20.59719 -19.92130 -19.06619 -17.93670 -17.85904 -17.45671 -17.28966 -17.15045 -16.56559 -16.25393 -16.22705 -15.89021 -15.44842 -15.31693 -15.02882 -14.96079 -14.86313 -14.56650 -14.26105 -14.03281 -13.53032 -13.33546 -13.25988 -13.09666 -12.94692 -12.63893 -12.60921 -12.59748 -12.51517 -12.41973 -12.39197 -12.12090 -12.08484 -11.96924 -11.79481 -11.51125 -11.47697 -10.37574 -10.35692 -10.02716 -10.01873 -9.41098 -8.47017 -5.95757 0.00375 0.88351 1.38189 1.42208 1.47682 1.54971 1.86160 2.04676 2.13565 2.30041 2.66644 3.00678 3.20270 3.50092 3.62102 3.66235 3.84429 3.88643 3.93309 4.06027 4.08130 4.30893 4.40937 4.43081 4.48847 4.54806 4.59399 4.73866 4.75127 4.81050 4.84894 4.86585 4.91352 4.95777 4.96068 5.06694 5.20407 5.28680 5.34610 5.38312 5.40941 5.81993 6.05451 6.20185 6.30741 6.51202 6.59779 6.98002 7.12342 7.55637 8.11237 8.70267 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023513 B = 0.001508 C = 0.001432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.560933 B =18565.543429 C =19547.101213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.030 3.970 3 C -0.145 4.145 4 C -0.138 4.138 5 C 0.209 3.791 6 N -0.472 5.472 7 C -0.099 4.099 8 C 0.601 3.399 9 O -0.570 6.570 10 N -0.699 5.699 11 C 0.127 3.873 12 C 0.059 3.941 13 N -0.683 5.683 14 C 0.068 3.932 15 C 0.436 3.564 16 O -0.625 6.625 17 N -0.572 5.572 18 C -0.336 4.336 19 H 0.078 0.922 20 C -0.011 4.011 21 N -0.919 5.919 22 Si 0.993 3.007 23 H -0.270 1.270 24 H -0.270 1.270 25 H -0.274 1.274 26 C 0.024 3.976 27 O -0.191 6.191 28 H 0.056 0.944 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.097 0.903 36 H 0.055 0.945 37 H 0.418 0.582 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.091 0.909 42 H 0.347 0.653 43 H 0.073 0.927 44 H 0.109 0.891 45 H 0.397 0.603 46 H 0.278 0.722 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.239 33.942 -10.616 35.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.028 3.972 3 C -0.203 4.203 4 C -0.196 4.196 5 C -0.001 4.001 6 N -0.202 5.202 7 C -0.218 4.218 8 C 0.387 3.613 9 O -0.450 6.450 10 N -0.350 5.350 11 C 0.003 3.997 12 C -0.070 4.070 13 N -0.316 5.316 14 C -0.065 4.065 15 C 0.223 3.777 16 O -0.511 6.511 17 N -0.209 5.209 18 C -0.466 4.466 19 H 0.096 0.904 20 C -0.211 4.211 21 N -0.560 5.560 22 Si 0.817 3.183 23 H -0.196 1.196 24 H -0.195 1.195 25 H -0.199 1.199 26 C -0.050 4.050 27 O -0.077 6.077 28 H 0.075 0.925 29 H 0.115 0.885 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.115 0.885 36 H 0.075 0.925 37 H 0.255 0.745 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.110 0.890 42 H 0.166 0.834 43 H 0.091 0.909 44 H 0.127 0.873 45 H 0.231 0.769 46 H 0.087 0.913 47 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 5.168 32.988 -9.933 34.837 hybrid contribution -0.841 -0.442 0.606 1.128 sum 4.327 32.546 -9.327 34.131 Atomic orbital electron populations 1.21926 0.90747 1.03154 1.03771 1.19453 0.97060 0.95253 0.85409 1.21939 1.01786 0.92399 1.04154 1.21926 1.01302 1.00861 0.95522 1.27012 0.91873 0.88174 0.93001 1.70654 1.22661 1.14563 1.12277 1.21646 1.06748 0.96928 0.96462 1.16940 0.78469 0.82433 0.83459 1.90829 1.46245 1.84002 1.23897 1.45567 1.51863 1.10641 1.26957 1.21166 1.01229 0.81691 0.95572 1.22037 0.99182 0.87568 0.98220 1.59886 1.57949 1.07710 1.06095 1.21529 0.97839 0.89271 0.97832 1.20896 0.82579 0.86783 0.87433 1.90502 1.48493 1.85240 1.26889 1.41911 1.45788 1.09854 1.23345 1.19678 1.31464 0.89078 1.06382 0.90390 1.26028 0.95483 1.02486 0.97141 1.69667 1.32830 1.33418 1.20057 0.84926 0.78663 0.76869 0.77867 1.19587 1.19467 1.19921 1.25783 0.99363 0.85510 0.94336 1.84437 1.54207 1.40559 1.28469 0.92517 0.88481 0.92245 0.92001 0.88670 0.91981 0.92240 0.88477 0.92541 0.74512 0.91577 0.91732 0.92668 0.89020 0.83414 0.90938 0.87346 0.76856 0.91261 0.73002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 8.46 71.98 0.61 -0.42 16 2 C 0.03 0.26 0.99 -52.93 -0.05 0.21 16 3 C -0.15 -0.78 8.01 71.98 0.58 -0.21 16 4 C -0.14 -1.04 8.45 71.98 0.61 -0.44 16 5 C 0.21 3.21 6.44 88.39 0.57 3.78 16 6 N -0.47 -9.01 11.05 -293.04 -3.24 -12.25 16 7 C -0.10 -2.07 6.99 40.41 0.28 -1.79 16 8 C 0.60 15.08 7.81 86.66 0.68 15.76 16 9 O -0.57 -17.83 16.89 -4.06 -0.07 -17.90 16 10 N -0.70 -15.12 5.55 -466.37 -2.59 -17.71 16 11 C 0.13 3.03 5.93 86.38 0.51 3.54 16 12 C 0.06 1.31 5.80 86.30 0.50 1.81 16 13 N -0.68 -21.32 6.12 -517.95 -3.17 -24.49 16 14 C 0.07 2.25 6.17 85.56 0.53 2.78 16 15 C 0.44 20.80 7.82 87.65 0.69 21.48 16 16 O -0.62 -35.14 15.78 -3.07 -0.05 -35.19 16 17 N -0.57 -29.38 5.29 -306.99 -1.62 -31.00 16 18 C -0.34 -19.27 9.68 84.04 0.81 -18.45 16 19 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 20 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 21 N -0.92 -49.48 13.05 21.66 0.28 -49.19 16 22 Si 0.99 43.15 29.55 68.60 2.03 45.18 16 23 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 24 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 25 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 26 C 0.02 0.40 11.95 67.32 0.80 1.20 16 27 O -0.19 -2.93 10.11 0.47 0.00 -2.92 16 28 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 29 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 33 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 36 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.42 7.47 8.20 -92.71 -0.76 6.71 16 38 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 41 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.35 11.45 8.43 -89.70 -0.76 10.69 16 43 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.11 3.21 8.14 -2.38 -0.02 3.19 16 45 H 0.40 19.21 7.90 -92.71 -0.73 18.48 16 46 H 0.28 13.99 8.31 -92.70 -0.77 13.22 16 47 H 0.25 2.61 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -75.32 404.91 -2.08 -77.40 By element: Atomic # 1 Polarization: 40.21 SS G_CDS: -1.23 Total: 38.97 kcal Atomic # 6 Polarization: 21.52 SS G_CDS: 7.58 Total: 29.10 kcal Atomic # 7 Polarization: -124.30 SS G_CDS: -10.34 Total: -134.64 kcal Atomic # 8 Polarization: -55.89 SS G_CDS: -0.11 Total: -56.01 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -75.32 -2.08 -77.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127172557.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.769 kcal (2) G-P(sol) polarization free energy of solvation -75.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds