Wall clock time and date at job start Tue Mar 31 2020 20:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46830 * 2 1 4 4 C 1.52994 * 109.47291 * 239.99699 * 2 1 3 5 5 C 1.50702 * 109.46951 * 119.99743 * 2 1 3 6 6 C 1.35322 * 126.66263 * 59.71147 * 5 2 1 7 7 C 1.42268 * 103.91957 * 180.26212 * 6 5 2 8 8 C 1.48328 * 126.94131 * 180.02562 * 7 6 5 9 9 O 1.21497 * 119.99518 * 359.97114 * 8 7 6 10 10 N 1.34772 * 120.00549 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00454 * 179.97438 * 10 8 7 12 12 C 1.52993 * 109.47239 * 180.02562 * 11 10 8 13 13 N 1.46901 * 109.47276 * 180.02562 * 12 11 10 14 14 C 1.46898 * 111.00259 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.46918 * 180.02562 * 14 13 12 16 16 O 1.21296 * 120.00294 * 359.97438 * 15 14 13 17 17 N 1.34780 * 119.99684 * 179.97438 * 15 14 13 18 18 C 1.37098 * 120.00011 * 179.97438 * 17 15 14 19 19 H 1.08008 * 119.99878 * 0.02562 * 18 17 15 20 20 C 1.38944 * 120.00360 * 180.02562 * 18 17 15 21 21 N 1.31417 * 119.99959 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00289 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46852 * 60.00311 * 22 20 18 24 24 H 1.48504 * 109.46881 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47165 * 300.00288 * 22 20 18 26 26 N 1.30996 * 106.12420 * 0.02562 * 7 6 5 27 27 O 1.20899 * 111.43755 * 0.02562 * 26 7 6 28 28 H 1.08996 * 109.47414 * 300.00072 * 1 2 3 29 29 H 1.09007 * 109.46922 * 60.00379 * 1 2 3 30 30 H 1.09003 * 109.46857 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46886 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47176 * 299.99531 * 3 2 1 33 33 H 1.08996 * 109.47181 * 59.99785 * 3 2 1 34 34 H 1.08994 * 109.47568 * 300.00238 * 4 2 1 35 35 H 1.09007 * 109.47201 * 60.00093 * 4 2 1 36 36 H 1.08995 * 109.47524 * 180.02562 * 4 2 1 37 37 H 1.07999 * 128.03809 * 0.26399 * 6 5 2 38 38 H 0.96997 * 119.99873 * 359.97438 * 10 8 7 39 39 H 1.08999 * 109.46805 * 300.00462 * 11 10 8 40 40 H 1.08999 * 109.46886 * 59.99681 * 11 10 8 41 41 H 1.08999 * 109.47433 * 299.99874 * 12 11 10 42 42 H 1.08999 * 109.47608 * 59.99920 * 12 11 10 43 43 H 1.00904 * 111.00245 * 56.04263 * 13 12 11 44 44 H 1.09002 * 109.46602 * 299.99579 * 14 13 12 45 45 H 1.08994 * 109.47205 * 60.00111 * 14 13 12 46 46 H 0.96997 * 120.00564 * 0.02562 * 17 15 14 47 47 H 0.97001 * 119.99966 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0323 -0.7104 1.2305 6 6 1.7854 -1.9942 1.5797 7 6 2.4791 -2.1533 2.8116 8 6 2.5482 -3.3791 3.6439 9 8 1.9709 -4.3876 3.2891 10 7 3.2511 -3.3743 4.7938 11 6 3.3188 -4.5848 5.6161 12 6 4.1722 -4.3118 6.8563 13 7 4.2406 -5.5258 7.6806 14 6 5.0533 -5.3004 8.8833 15 6 5.1008 -6.5650 9.7017 16 8 4.5148 -7.5563 9.3207 17 7 5.7945 -6.5944 10.8569 18 6 5.8373 -7.7446 11.6017 19 1 5.3155 -8.6274 11.2625 20 6 6.5519 -7.7749 12.7929 21 7 7.1864 -6.7007 13.2059 22 14 6.6096 -9.3419 13.8081 23 1 7.2121 -10.4328 13.0005 24 1 7.4320 -9.1143 15.0235 25 1 5.2313 -9.7244 14.2068 26 7 3.0447 -0.9987 3.0624 27 8 2.8043 -0.1913 2.1952 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2490 37 1 1.1983 -2.7276 1.0470 38 1 3.7123 -2.5693 5.0769 39 1 2.3133 -4.8719 5.9234 40 1 3.7664 -5.3927 5.0373 41 1 5.1778 -4.0244 6.5494 42 1 3.7243 -3.5040 7.4350 43 1 4.5929 -6.3061 7.1466 44 1 6.0650 -5.0193 8.5907 45 1 4.6108 -4.5000 9.4762 46 1 6.2628 -5.8016 11.1618 47 1 7.6856 -6.7219 14.0374 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131209156.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:15 Heat of formation + Delta-G solvation = -21.502470 kcal Electronic energy + Delta-G solvation = -27492.551410 eV Core-core repulsion = 23292.427870 eV Total energy + Delta-G solvation = -4200.123541 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.51831 -39.89151 -38.32726 -37.93645 -36.39039 -34.56459 -34.26540 -33.74320 -31.40644 -31.23147 -29.54294 -28.01520 -27.92793 -26.38554 -24.85017 -23.70569 -23.61957 -22.20506 -21.70578 -19.95356 -19.28354 -18.19482 -17.93268 -17.74975 -17.16702 -16.26871 -16.23689 -15.89129 -15.34143 -15.21448 -14.76859 -14.70214 -14.55637 -14.39836 -14.10178 -13.93760 -13.90624 -13.44157 -13.19012 -12.99944 -12.94652 -12.47023 -12.30762 -12.23633 -11.95063 -11.82845 -11.73218 -11.54784 -11.50848 -11.47561 -11.46640 -11.01467 -10.85411 -10.62416 -10.44091 -10.21675 -9.89708 -9.50647 -9.40670 -8.51707 -8.14688 -7.97084 -6.42155 -3.83134 0.71280 1.25346 2.39505 2.58491 2.83938 3.20437 3.26102 3.30730 3.54485 3.83258 3.89463 4.12122 4.18856 4.23394 4.35447 4.44111 4.57267 4.73911 4.84962 4.89695 4.96447 4.98971 5.05054 5.14188 5.16006 5.24139 5.24505 5.25262 5.32601 5.35645 5.43977 5.54110 5.63032 5.67055 5.70640 5.75658 5.85017 5.92953 6.03585 6.23842 7.00755 7.10262 7.54409 7.54908 7.57778 7.77201 8.05207 8.60304 9.17128 9.53061 10.04436 10.75442 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.043779 B = 0.001351 C = 0.001324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.420603 B =20717.075985 C =21147.505234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.015 3.985 3 C -0.149 4.149 4 C -0.143 4.143 5 C -0.020 4.020 6 C -0.178 4.178 7 C -0.023 4.023 8 C 0.598 3.402 9 O -0.518 6.518 10 N -0.712 5.712 11 C 0.119 3.881 12 C 0.049 3.951 13 N -0.665 5.665 14 C 0.052 3.948 15 C 0.440 3.560 16 O -0.582 6.582 17 N -0.562 5.562 18 C -0.301 4.301 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.273 1.273 26 N -0.334 5.334 27 O 0.126 5.874 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.180 0.820 38 H 0.407 0.593 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.034 0.966 42 H 0.079 0.921 43 H 0.353 0.647 44 H 0.045 0.955 45 H 0.088 0.912 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.967 20.116 -28.318 35.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.014 3.986 3 C -0.206 4.206 4 C -0.200 4.200 5 C -0.083 4.083 6 C -0.201 4.201 7 C -0.182 4.182 8 C 0.381 3.619 9 O -0.392 6.392 10 N -0.364 5.364 11 C -0.004 4.004 12 C -0.081 4.081 13 N -0.298 5.298 14 C -0.080 4.080 15 C 0.225 3.775 16 O -0.466 6.466 17 N -0.199 5.199 18 C -0.430 4.430 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 N -0.034 5.034 27 O 0.050 5.950 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.197 0.803 38 H 0.241 0.759 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.052 0.948 42 H 0.097 0.903 43 H 0.172 0.828 44 H 0.063 0.937 45 H 0.106 0.894 46 H 0.226 0.774 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.470 19.215 -27.249 34.661 hybrid contribution 1.108 -0.272 0.186 1.156 sum -8.361 18.943 -27.063 34.076 Atomic orbital electron populations 1.21967 0.91851 1.03129 1.03080 1.19226 0.96208 0.95396 0.87757 1.21923 1.01995 0.93598 1.03091 1.21961 1.01868 1.00718 0.95469 1.24489 0.96373 0.93583 0.93886 1.22360 1.04605 0.96923 0.96189 1.23488 1.02111 0.94434 0.98146 1.16818 0.79408 0.85214 0.80413 1.90834 1.44972 1.32235 1.71134 1.45759 1.52061 1.16265 1.22303 1.21395 1.02322 0.85983 0.90680 1.22073 0.97984 0.94665 0.93409 1.59923 1.56879 1.05252 1.07750 1.21672 0.95615 0.98437 0.92305 1.19765 0.84461 0.89480 0.83805 1.90533 1.48322 1.36127 1.71659 1.41844 1.44948 1.14107 1.19003 1.19670 1.29879 0.91651 1.01847 0.87927 1.25262 0.96414 0.98677 0.97504 1.69606 1.32979 1.28340 1.23392 0.85908 0.78421 0.81165 0.78672 1.19905 1.20967 1.19850 1.74180 1.18566 1.00341 1.10326 1.84773 1.51058 1.35167 1.23972 0.91826 0.90858 0.91673 0.91654 0.91184 0.91647 0.91684 0.90856 0.91846 0.80271 0.75864 0.89635 0.90809 0.94756 0.90294 0.82759 0.93664 0.89414 0.77442 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.47 8.36 37.16 0.31 -0.16 16 2 C 0.02 0.06 0.94 -155.66 -0.15 -0.08 16 3 C -0.15 -0.50 8.07 37.16 0.30 -0.20 16 4 C -0.14 -0.47 8.36 37.15 0.31 -0.16 16 5 C -0.02 -0.14 5.76 -35.35 -0.20 -0.34 16 6 C -0.18 -1.52 10.40 -39.07 -0.41 -1.93 16 7 C -0.02 -0.24 7.19 -82.52 -0.59 -0.84 16 8 C 0.60 7.51 7.85 -12.11 -0.10 7.42 16 9 O -0.52 -8.03 16.95 5.37 0.09 -7.94 16 10 N -0.71 -7.75 5.55 -61.10 -0.34 -8.09 16 11 C 0.12 1.41 5.93 -4.05 -0.02 1.39 16 12 C 0.05 0.58 5.80 -3.83 -0.02 0.56 16 13 N -0.66 -10.63 6.13 -115.06 -0.70 -11.34 16 14 C 0.05 0.91 6.17 -4.98 -0.03 0.88 16 15 C 0.44 10.43 7.82 -10.98 -0.09 10.34 16 16 O -0.58 -15.96 15.78 5.54 0.09 -15.87 16 17 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 18 C -0.30 -8.45 9.68 -14.94 -0.14 -8.59 16 19 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 20 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 21 N -0.90 -24.56 13.05 55.50 0.72 -23.84 16 22 Si 0.93 21.15 29.55 -169.99 -5.02 16.13 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 N -0.33 -3.42 11.84 33.29 0.39 -3.03 16 27 O 0.13 1.09 10.65 17.25 0.18 1.27 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.06 0.22 8.03 -51.93 -0.42 -0.19 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 33 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.06 0.22 8.03 -51.93 -0.42 -0.20 16 35 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 36 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.18 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.41 3.71 8.23 -40.82 -0.34 3.37 16 39 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.35 5.81 8.43 -39.29 -0.33 5.47 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 46 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 47 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 403.94 15.07 6.09 6.09 Total: -1.00 -33.78 403.94 -6.74 -40.51 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -7.25 Total: 11.66 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: -0.93 Total: 8.81 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: 0.02 Total: -60.65 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: 0.36 Total: -22.54 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.78 -6.74 -40.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131209156.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.011 kcal (2) G-P(sol) polarization free energy of solvation -33.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds