Wall clock time and date at job start Tue Mar 31 2020 20:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46830 * 2 1 4 4 C 1.52994 * 109.47291 * 239.99699 * 2 1 3 5 5 C 1.50702 * 109.46951 * 119.99743 * 2 1 3 6 6 C 1.35322 * 126.66263 * 59.71147 * 5 2 1 7 7 C 1.42268 * 103.91957 * 180.26212 * 6 5 2 8 8 C 1.48328 * 126.94131 * 180.02562 * 7 6 5 9 9 O 1.21497 * 119.99518 * 359.97114 * 8 7 6 10 10 N 1.34772 * 120.00549 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00454 * 179.97438 * 10 8 7 12 12 C 1.52993 * 109.47239 * 180.02562 * 11 10 8 13 13 N 1.46901 * 109.47276 * 180.02562 * 12 11 10 14 14 C 1.46898 * 111.00259 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.46918 * 180.02562 * 14 13 12 16 16 O 1.21296 * 120.00294 * 359.97438 * 15 14 13 17 17 N 1.34780 * 119.99684 * 179.97438 * 15 14 13 18 18 C 1.37098 * 120.00011 * 179.97438 * 17 15 14 19 19 H 1.08008 * 119.99878 * 0.02562 * 18 17 15 20 20 C 1.38944 * 120.00360 * 180.02562 * 18 17 15 21 21 N 1.31417 * 119.99959 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00289 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46852 * 60.00311 * 22 20 18 24 24 H 1.48504 * 109.46881 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47165 * 300.00288 * 22 20 18 26 26 N 1.30996 * 106.12420 * 0.02562 * 7 6 5 27 27 O 1.20899 * 111.43755 * 0.02562 * 26 7 6 28 28 H 1.08996 * 109.47414 * 300.00072 * 1 2 3 29 29 H 1.09007 * 109.46922 * 60.00379 * 1 2 3 30 30 H 1.09003 * 109.46857 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46886 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47176 * 299.99531 * 3 2 1 33 33 H 1.08996 * 109.47181 * 59.99785 * 3 2 1 34 34 H 1.08994 * 109.47568 * 300.00238 * 4 2 1 35 35 H 1.09007 * 109.47201 * 60.00093 * 4 2 1 36 36 H 1.08995 * 109.47524 * 180.02562 * 4 2 1 37 37 H 1.07999 * 128.03809 * 0.26399 * 6 5 2 38 38 H 0.96997 * 119.99873 * 359.97438 * 10 8 7 39 39 H 1.08999 * 109.46805 * 300.00462 * 11 10 8 40 40 H 1.08999 * 109.46886 * 59.99681 * 11 10 8 41 41 H 1.08999 * 109.47433 * 299.99874 * 12 11 10 42 42 H 1.08999 * 109.47608 * 59.99920 * 12 11 10 43 43 H 1.00904 * 111.00245 * 56.04263 * 13 12 11 44 44 H 1.09002 * 109.46602 * 299.99579 * 14 13 12 45 45 H 1.08994 * 109.47205 * 60.00111 * 14 13 12 46 46 H 0.96997 * 120.00564 * 0.02562 * 17 15 14 47 47 H 0.97001 * 119.99966 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0323 -0.7104 1.2305 6 6 1.7854 -1.9942 1.5797 7 6 2.4791 -2.1533 2.8116 8 6 2.5482 -3.3791 3.6439 9 8 1.9709 -4.3876 3.2891 10 7 3.2511 -3.3743 4.7938 11 6 3.3188 -4.5848 5.6161 12 6 4.1722 -4.3118 6.8563 13 7 4.2406 -5.5258 7.6806 14 6 5.0533 -5.3004 8.8833 15 6 5.1008 -6.5650 9.7017 16 8 4.5148 -7.5563 9.3207 17 7 5.7945 -6.5944 10.8569 18 6 5.8373 -7.7446 11.6017 19 1 5.3155 -8.6274 11.2625 20 6 6.5519 -7.7749 12.7929 21 7 7.1864 -6.7007 13.2059 22 14 6.6096 -9.3419 13.8081 23 1 7.2121 -10.4328 13.0005 24 1 7.4320 -9.1143 15.0235 25 1 5.2313 -9.7244 14.2068 26 7 3.0447 -0.9987 3.0624 27 8 2.8043 -0.1913 2.1952 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2490 37 1 1.1983 -2.7276 1.0470 38 1 3.7123 -2.5693 5.0769 39 1 2.3133 -4.8719 5.9234 40 1 3.7664 -5.3927 5.0373 41 1 5.1778 -4.0244 6.5494 42 1 3.7243 -3.5040 7.4350 43 1 4.5929 -6.3061 7.1466 44 1 6.0650 -5.0193 8.5907 45 1 4.6108 -4.5000 9.4762 46 1 6.2628 -5.8016 11.1618 47 1 7.6856 -6.7219 14.0374 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131209156.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:14 Heat of formation + Delta-G solvation = -47.401755 kcal Electronic energy + Delta-G solvation = -27493.674488 eV Core-core repulsion = 23292.427870 eV Total energy + Delta-G solvation = -4201.246618 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.24213 -40.89743 -40.16551 -38.29527 -37.60022 -36.04763 -35.46150 -35.00429 -33.28156 -32.04719 -30.72099 -28.36109 -28.16764 -27.84662 -26.19374 -25.00059 -24.27949 -23.19530 -22.41382 -21.12264 -20.74653 -19.93095 -18.92437 -18.35810 -18.13032 -17.63199 -17.32199 -17.20666 -16.60213 -16.32910 -15.97917 -15.83684 -15.37333 -15.32014 -15.00396 -14.97813 -14.90992 -14.63270 -14.44215 -14.06175 -13.53921 -13.37217 -13.24342 -13.21437 -12.95866 -12.74796 -12.64674 -12.55996 -12.51866 -12.43777 -12.28051 -12.12752 -12.01989 -11.79298 -11.66040 -11.64394 -11.51377 -10.50692 -10.39417 -10.37916 -10.02864 -9.43647 -8.47549 -5.96512 -0.06550 0.58082 1.39493 1.41594 1.52252 1.59900 1.87909 1.91583 2.03733 2.29063 2.71497 2.98677 3.19699 3.31214 3.53682 3.74817 3.80187 3.91375 3.95446 3.98471 4.03798 4.21485 4.29036 4.38370 4.39408 4.47247 4.57619 4.78232 4.78352 4.79564 4.80479 4.84084 4.89447 5.01038 5.01517 5.07447 5.09977 5.30150 5.39241 5.39927 5.42794 5.79462 6.03618 6.13941 6.28248 6.58854 6.77720 6.92963 7.11417 7.54654 8.10129 8.69468 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.043779 B = 0.001351 C = 0.001324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.420603 B =20717.075985 C =21147.505234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.017 3.983 3 C -0.149 4.149 4 C -0.143 4.143 5 C -0.004 4.004 6 C -0.190 4.190 7 C -0.042 4.042 8 C 0.597 3.403 9 O -0.555 6.555 10 N -0.700 5.700 11 C 0.127 3.873 12 C 0.058 3.942 13 N -0.683 5.683 14 C 0.067 3.933 15 C 0.435 3.565 16 O -0.625 6.625 17 N -0.571 5.571 18 C -0.338 4.338 19 H 0.078 0.922 20 C -0.011 4.011 21 N -0.919 5.919 22 Si 0.993 3.007 23 H -0.272 1.272 24 H -0.269 1.269 25 H -0.273 1.273 26 N -0.344 5.344 27 O 0.130 5.870 28 H 0.057 0.943 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.057 0.943 37 H 0.189 0.811 38 H 0.417 0.583 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.056 0.944 42 H 0.092 0.908 43 H 0.348 0.652 44 H 0.073 0.927 45 H 0.109 0.891 46 H 0.397 0.603 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.778 21.931 -29.267 37.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.015 3.985 3 C -0.206 4.206 4 C -0.200 4.200 5 C -0.067 4.067 6 C -0.212 4.212 7 C -0.200 4.200 8 C 0.381 3.619 9 O -0.431 6.431 10 N -0.352 5.352 11 C 0.003 3.997 12 C -0.071 4.071 13 N -0.316 5.316 14 C -0.065 4.065 15 C 0.223 3.777 16 O -0.511 6.511 17 N -0.208 5.208 18 C -0.467 4.467 19 H 0.096 0.904 20 C -0.211 4.211 21 N -0.560 5.560 22 Si 0.816 3.184 23 H -0.197 1.197 24 H -0.194 1.194 25 H -0.198 1.198 26 N -0.043 5.043 27 O 0.053 5.947 28 H 0.076 0.924 29 H 0.111 0.889 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.076 0.924 37 H 0.206 0.794 38 H 0.254 0.746 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.111 0.889 43 H 0.166 0.834 44 H 0.091 0.909 45 H 0.127 0.873 46 H 0.231 0.769 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.254 21.085 -28.183 36.394 hybrid contribution 1.019 -0.756 0.391 1.328 sum -8.235 20.329 -27.792 35.405 Atomic orbital electron populations 1.21994 0.90984 1.03244 1.03801 1.19436 0.96761 0.95710 0.86558 1.21950 1.01804 0.93008 1.03871 1.21988 1.01579 1.00785 0.95648 1.25050 0.94703 0.93129 0.93831 1.22538 1.05036 0.97886 0.95768 1.23390 1.03536 0.94112 0.98977 1.17063 0.78836 0.85350 0.80611 1.90808 1.46589 1.33667 1.72082 1.45639 1.51545 1.16340 1.21690 1.21219 1.01416 0.86238 0.90833 1.22048 0.99175 0.93142 0.92760 1.59883 1.56836 1.06831 1.08061 1.21529 0.97721 0.95049 0.92175 1.20889 0.82487 0.91048 0.83319 1.90502 1.49640 1.38456 1.72516 1.41906 1.45663 1.13637 1.19636 1.19647 1.31438 0.92185 1.03437 0.90360 1.26023 0.95446 1.01738 0.97849 1.69663 1.32859 1.29645 1.23801 0.84997 0.78476 0.77477 0.77441 1.19703 1.19383 1.19794 1.74167 1.18909 1.00231 1.11025 1.84748 1.51043 1.34861 1.24080 0.92375 0.88896 0.91910 0.92009 0.89305 0.92034 0.91914 0.88901 0.92355 0.79406 0.74627 0.91248 0.91408 0.92585 0.88935 0.83355 0.90944 0.87334 0.76866 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.67 8.36 71.98 0.60 -0.07 16 2 C 0.02 0.11 0.94 -52.93 -0.05 0.06 16 3 C -0.15 -0.69 8.07 71.98 0.58 -0.11 16 4 C -0.14 -0.66 8.36 71.98 0.60 -0.06 16 5 C 0.00 -0.05 5.76 25.01 0.14 0.09 16 6 C -0.19 -3.17 10.40 22.60 0.24 -2.93 16 7 C -0.04 -0.91 7.19 42.96 0.31 -0.60 16 8 C 0.60 15.12 7.85 86.93 0.68 15.80 16 9 O -0.55 -17.68 16.95 -3.71 -0.06 -17.75 16 10 N -0.70 -14.85 5.55 -465.52 -2.59 -17.43 16 11 C 0.13 2.94 5.93 86.38 0.51 3.45 16 12 C 0.06 1.26 5.80 86.30 0.50 1.76 16 13 N -0.68 -21.10 6.13 -517.95 -3.17 -24.27 16 14 C 0.07 2.24 6.17 85.56 0.53 2.77 16 15 C 0.44 20.72 7.82 87.66 0.69 21.41 16 16 O -0.62 -35.02 15.78 -3.08 -0.05 -35.06 16 17 N -0.57 -29.32 5.29 -306.97 -1.62 -30.95 16 18 C -0.34 -19.30 9.68 84.04 0.81 -18.49 16 19 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 20 C -0.01 -0.57 5.50 84.92 0.47 -0.10 16 21 N -0.92 -49.52 13.05 21.66 0.28 -49.23 16 22 Si 0.99 43.10 29.55 68.60 2.03 45.13 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 24 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 26 N -0.34 -6.84 11.84 -49.51 -0.59 -7.43 16 27 O 0.13 2.13 10.65 71.90 0.77 2.89 16 28 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.09 0.10 8.14 -2.38 -0.02 0.08 16 30 H 0.06 0.34 8.03 -2.39 -0.02 0.32 16 31 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.09 0.10 8.14 -2.39 -0.02 0.08 16 33 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.06 0.33 8.03 -2.39 -0.02 0.31 16 35 H 0.09 0.09 8.14 -2.38 -0.02 0.07 16 36 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.19 2.68 8.06 -2.91 -0.02 2.66 16 38 H 0.42 7.09 8.23 -92.71 -0.76 6.33 16 39 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 42 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.35 11.34 8.43 -89.69 -0.76 10.58 16 44 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 46 H 0.40 19.21 7.90 -92.71 -0.73 18.47 16 47 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -74.02 403.94 0.37 -73.65 By element: Atomic # 1 Polarization: 38.69 SS G_CDS: -1.24 Total: 37.45 kcal Atomic # 6 Polarization: 16.38 SS G_CDS: 6.61 Total: 22.99 kcal Atomic # 7 Polarization: -121.62 SS G_CDS: -7.68 Total: -129.31 kcal Atomic # 8 Polarization: -50.57 SS G_CDS: 0.65 Total: -49.92 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -74.02 0.37 -73.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131209156.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.244 kcal (2) G-P(sol) polarization free energy of solvation -74.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds