Wall clock time and date at job start Tue Mar 31 2020 21:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46700 * 2 1 4 4 C 1.52998 * 109.47043 * 240.00264 * 2 1 3 5 5 O 1.45201 * 109.47486 * 120.00041 * 2 1 3 6 6 C 1.34632 * 116.99862 * 60.00003 * 5 2 1 7 7 O 1.21514 * 120.00321 * 0.02562 * 6 5 2 8 8 N 1.34781 * 119.99652 * 180.02562 * 6 5 2 9 9 C 1.46509 * 119.99738 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.46680 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.46737 * 180.02562 * 10 9 8 12 12 N 1.46494 * 109.47347 * 180.02562 * 11 10 9 13 13 C 1.35048 * 124.88177 * 125.01981 * 12 11 10 14 14 C 1.35356 * 107.23963 * 180.02562 * 13 12 11 15 15 C 1.41539 * 105.50448 * 0.02562 * 14 13 12 16 16 C 1.47603 * 126.52572 * 179.97438 * 15 14 13 17 17 O 1.21608 * 120.00024 * 359.97438 * 16 15 14 18 18 N 1.34774 * 120.00164 * 180.02562 * 16 15 14 19 19 C 1.36915 * 120.00301 * 179.97438 * 18 16 15 20 20 H 1.08009 * 119.99474 * 0.02562 * 19 18 16 21 21 C 1.39011 * 120.00503 * 179.97438 * 19 18 16 22 22 N 1.31389 * 119.99937 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00484 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.46844 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47400 * 120.00031 * 23 21 19 26 26 H 1.48497 * 109.47380 * 240.00239 * 23 21 19 27 27 N 1.28470 * 124.87684 * 305.02558 * 12 11 10 28 28 H 1.08999 * 109.47097 * 299.99630 * 1 2 3 29 29 H 1.08996 * 109.47388 * 60.00367 * 1 2 3 30 30 H 1.09011 * 109.46759 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46959 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.46908 * 299.99823 * 3 2 1 33 33 H 1.08994 * 109.47322 * 59.99948 * 3 2 1 34 34 H 1.08994 * 109.47289 * 299.99512 * 4 2 1 35 35 H 1.08996 * 109.47544 * 59.99464 * 4 2 1 36 36 H 1.09004 * 109.47192 * 179.97438 * 4 2 1 37 37 H 0.96996 * 119.99972 * 0.02562 * 8 6 5 38 38 H 1.09000 * 109.46748 * 59.99623 * 9 8 6 39 39 H 1.09004 * 109.46998 * 299.99872 * 9 8 6 40 40 H 1.08996 * 109.47280 * 60.00224 * 10 9 8 41 41 H 1.08993 * 109.46920 * 299.99706 * 10 9 8 42 42 H 1.09000 * 109.46753 * 59.99700 * 11 10 9 43 43 H 1.09004 * 109.46936 * 299.99984 * 11 10 9 44 44 H 1.07998 * 126.37852 * 0.02562 * 13 12 11 45 45 H 1.08000 * 127.24234 * 179.97438 * 14 13 12 46 46 H 0.96999 * 120.00200 * 359.97438 * 18 16 15 47 47 H 0.96995 * 119.99905 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6524 -1.9723 1.3383 7 8 0.9517 -2.5097 0.5035 8 7 2.0675 -2.6653 2.4171 9 6 1.6743 -4.0669 2.5831 10 6 2.2745 -4.6147 3.8795 11 6 1.8644 -6.0786 4.0525 12 7 2.4385 -6.6031 5.2940 13 6 1.7310 -7.1831 6.2874 14 6 2.6104 -7.5320 7.2554 15 6 3.8793 -7.1249 6.7785 16 6 5.1715 -7.2836 7.4738 17 8 5.2118 -7.8096 8.5695 18 7 6.3067 -6.8448 6.8948 19 6 7.5054 -6.9916 7.5400 20 1 7.5412 -7.4595 8.5128 21 6 8.6763 -6.5395 6.9426 22 7 8.6329 -5.9717 5.7586 23 14 10.3118 -6.7404 7.8226 24 1 10.0910 -7.4059 9.1317 25 1 11.2220 -7.5696 6.9925 26 1 10.9224 -5.4049 8.0436 27 7 3.6873 -6.5773 5.5943 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6765 1.9564 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6768 -1.7488 -1.2493 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 2.6265 -2.2362 3.0836 38 1 2.0415 -4.6497 1.7383 39 1 0.5874 -4.1366 2.6275 40 1 1.9076 -4.0320 4.7244 41 1 3.3612 -4.5451 3.8346 42 1 2.2316 -6.6610 3.2075 43 1 0.7776 -6.1486 4.0972 44 1 0.6625 -7.3394 6.3060 45 1 2.3900 -8.0180 8.1944 46 1 6.2746 -6.4250 6.0210 47 1 9.4499 -5.6559 5.3419 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143315940.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:47 Heat of formation + Delta-G solvation = -47.289486 kcal Electronic energy + Delta-G solvation = -28314.040262 eV Core-core repulsion = 24112.798513 eV Total energy + Delta-G solvation = -4201.241750 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.13259 -41.02104 -38.02620 -37.75465 -36.02674 -34.54004 -33.96075 -33.62058 -31.34082 -30.46236 -30.16515 -27.75233 -27.70795 -26.60183 -25.03212 -23.19261 -22.17591 -21.58679 -20.89648 -20.25271 -18.95398 -18.40746 -17.99573 -17.22517 -16.76217 -16.68280 -16.02984 -15.78757 -15.28960 -15.15569 -14.81170 -14.61521 -14.52116 -13.89246 -13.76796 -13.57548 -13.35322 -13.03782 -12.84702 -12.83985 -12.49635 -12.40929 -12.29234 -12.24389 -12.23336 -12.01835 -11.80554 -11.63490 -11.53915 -11.31455 -11.11050 -10.67797 -10.37398 -10.33999 -10.33191 -10.14835 -9.56108 -9.50668 -8.77616 -8.57154 -8.54804 -7.96942 -6.44679 -3.80673 1.83165 2.24772 2.57141 2.71146 2.74785 3.22684 3.27034 3.34890 3.81414 4.16588 4.33872 4.36810 4.41755 4.45584 4.51792 4.55680 4.64742 4.84303 4.94460 5.04106 5.12220 5.16039 5.18610 5.19673 5.32358 5.34656 5.39126 5.43515 5.46146 5.51397 5.64321 5.67947 5.80135 5.90402 5.94774 6.03036 6.07808 6.24493 6.25037 6.41603 6.98749 7.10849 7.17285 7.52837 8.05282 8.09681 8.40022 8.66187 9.15560 9.56970 10.09310 10.72251 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010871 B = 0.002123 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.048878 B =13186.126567 C =15355.059010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.136 3.864 3 C -0.142 4.142 4 C -0.184 4.184 5 O -0.364 6.364 6 C 0.651 3.349 7 O -0.570 6.570 8 N -0.710 5.710 9 C 0.142 3.858 10 C -0.150 4.150 11 C 0.133 3.867 12 N -0.299 5.299 13 C -0.030 4.030 14 C -0.190 4.190 15 C 0.024 3.976 16 C 0.508 3.492 17 O -0.593 6.593 18 N -0.535 5.535 19 C -0.297 4.297 20 H 0.108 0.892 21 C 0.024 3.976 22 N -0.889 5.889 23 Si 0.933 3.067 24 H -0.266 1.266 25 H -0.280 1.280 26 H -0.280 1.280 27 N -0.276 5.276 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.410 0.590 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.101 0.899 44 H 0.173 0.827 45 H 0.156 0.844 46 H 0.400 0.600 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.145 11.857 -13.941 25.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.099 3.901 3 C -0.199 4.199 4 C -0.241 4.241 5 O -0.279 6.279 6 C 0.405 3.595 7 O -0.459 6.459 8 N -0.369 5.369 9 C 0.019 3.981 10 C -0.188 4.188 11 C 0.011 3.989 12 N -0.087 5.087 13 C -0.173 4.173 14 C -0.218 4.218 15 C -0.137 4.137 16 C 0.294 3.706 17 O -0.478 6.478 18 N -0.170 5.170 19 C -0.428 4.428 20 H 0.125 0.875 21 C -0.180 4.180 22 N -0.529 5.529 23 Si 0.759 3.241 24 H -0.190 1.190 25 H -0.206 1.206 26 H -0.206 1.206 27 N -0.110 5.110 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.245 0.755 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.114 0.886 42 H 0.112 0.888 43 H 0.120 0.880 44 H 0.191 0.809 45 H 0.173 0.827 46 H 0.235 0.765 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.807 11.941 -14.818 26.062 hybrid contribution 0.503 0.034 0.680 0.846 sum -17.305 11.974 -14.138 25.352 Atomic orbital electron populations 1.22518 0.93991 1.05033 1.02496 1.22086 0.94338 0.91569 0.82066 1.21872 1.02441 0.92447 1.03126 1.22521 1.01744 1.03470 0.96396 1.86318 1.71499 1.23558 1.46516 1.18041 0.78811 0.80567 0.82121 1.90900 1.41280 1.70504 1.43244 1.44676 1.55776 1.12605 1.23893 1.21202 0.99995 0.79181 0.97709 1.22091 1.04224 0.95034 0.97457 1.21629 0.98670 0.94359 0.84194 1.45348 1.04287 1.43583 1.15454 1.22702 0.99064 1.04880 0.90616 1.21748 0.91228 1.07439 1.01426 1.22563 0.96522 1.02489 0.92134 1.16527 0.81603 0.86092 0.86427 1.90608 1.85815 1.50110 1.21269 1.41813 1.05262 1.50364 1.19533 1.19867 0.82849 1.36557 1.03501 0.87458 1.25369 1.00070 0.96513 0.96005 1.69645 1.29660 1.38839 1.14793 0.85753 0.80813 0.78034 0.79483 1.18995 1.20630 1.20636 1.73627 0.98719 1.21665 1.17037 0.92183 0.91115 0.89396 0.91329 0.90110 0.91434 0.89366 0.91126 0.92030 0.75500 0.90530 0.90826 0.90153 0.88595 0.88843 0.88027 0.80937 0.82666 0.76536 0.91708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.47 8.37 37.16 0.31 -1.16 16 2 C 0.14 1.16 1.13 -90.62 -0.10 1.06 16 3 C -0.14 -0.88 8.85 37.16 0.33 -0.56 16 4 C -0.18 -1.56 8.37 37.16 0.31 -1.25 16 5 O -0.36 -3.83 9.94 -40.30 -0.40 -4.23 16 6 C 0.65 7.25 8.06 54.06 0.44 7.68 16 7 O -0.57 -7.31 11.88 -19.28 -0.23 -7.54 16 8 N -0.71 -6.48 5.56 -65.27 -0.36 -6.84 16 9 C 0.14 1.12 5.67 -4.04 -0.02 1.10 16 10 C -0.15 -1.29 5.43 -26.73 -0.15 -1.44 16 11 C 0.13 1.18 6.40 -4.04 -0.03 1.15 16 12 N -0.30 -4.22 3.41 -61.33 -0.21 -4.42 16 13 C -0.03 -0.41 11.40 -17.16 -0.20 -0.60 16 14 C -0.19 -3.35 10.81 -39.35 -0.43 -3.78 16 15 C 0.02 0.53 7.13 -82.77 -0.59 -0.06 16 16 C 0.51 13.37 7.77 -12.44 -0.10 13.27 16 17 O -0.59 -17.19 16.50 5.27 0.09 -17.10 16 18 N -0.54 -14.63 5.28 -11.90 -0.06 -14.69 16 19 C -0.30 -8.52 9.68 -15.00 -0.15 -8.66 16 20 H 0.11 3.17 7.15 -52.48 -0.38 2.80 16 21 C 0.02 0.64 5.50 -17.45 -0.10 0.54 16 22 N -0.89 -24.56 13.05 55.50 0.72 -23.84 16 23 Si 0.93 21.06 29.55 -169.99 -5.02 16.03 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 N -0.28 -5.24 11.36 33.41 0.38 -4.86 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.89 5.88 -51.92 -0.31 0.58 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.94 5.88 -51.93 -0.31 0.63 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.41 3.27 8.58 -40.82 -0.35 2.92 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.10 1.05 8.08 -51.93 -0.42 0.64 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.10 0.55 8.04 -51.93 -0.42 0.13 16 44 H 0.17 1.49 8.06 -52.49 -0.42 1.06 16 45 H 0.16 2.59 8.06 -52.49 -0.42 2.17 16 46 H 0.40 10.74 7.62 -40.82 -0.31 10.43 16 47 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 397.65 15.07 5.99 5.99 Total: -1.00 -35.62 397.65 -6.68 -42.30 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -7.12 Total: 11.89 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -0.46 Total: 7.31 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.47 Total: -54.65 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -0.54 Total: -28.87 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.62 -6.68 -42.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143315940.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.991 kcal (2) G-P(sol) polarization free energy of solvation -35.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds