Wall clock time and date at job start Tue Mar 31 2020 21:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46700 * 2 1 4 4 C 1.52998 * 109.47043 * 240.00264 * 2 1 3 5 5 O 1.45201 * 109.47486 * 120.00041 * 2 1 3 6 6 C 1.34632 * 116.99862 * 60.00003 * 5 2 1 7 7 O 1.21514 * 120.00321 * 0.02562 * 6 5 2 8 8 N 1.34781 * 119.99652 * 180.02562 * 6 5 2 9 9 C 1.46509 * 119.99738 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.46680 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.46737 * 180.02562 * 10 9 8 12 12 N 1.46494 * 109.47347 * 180.02562 * 11 10 9 13 13 C 1.35048 * 124.88177 * 125.01981 * 12 11 10 14 14 C 1.35356 * 107.23963 * 180.02562 * 13 12 11 15 15 C 1.41539 * 105.50448 * 0.02562 * 14 13 12 16 16 C 1.47603 * 126.52572 * 179.97438 * 15 14 13 17 17 O 1.21608 * 120.00024 * 359.97438 * 16 15 14 18 18 N 1.34774 * 120.00164 * 180.02562 * 16 15 14 19 19 C 1.36915 * 120.00301 * 179.97438 * 18 16 15 20 20 H 1.08009 * 119.99474 * 0.02562 * 19 18 16 21 21 C 1.39011 * 120.00503 * 179.97438 * 19 18 16 22 22 N 1.31389 * 119.99937 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00484 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.46844 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47400 * 120.00031 * 23 21 19 26 26 H 1.48497 * 109.47380 * 240.00239 * 23 21 19 27 27 N 1.28470 * 124.87684 * 305.02558 * 12 11 10 28 28 H 1.08999 * 109.47097 * 299.99630 * 1 2 3 29 29 H 1.08996 * 109.47388 * 60.00367 * 1 2 3 30 30 H 1.09011 * 109.46759 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46959 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.46908 * 299.99823 * 3 2 1 33 33 H 1.08994 * 109.47322 * 59.99948 * 3 2 1 34 34 H 1.08994 * 109.47289 * 299.99512 * 4 2 1 35 35 H 1.08996 * 109.47544 * 59.99464 * 4 2 1 36 36 H 1.09004 * 109.47192 * 179.97438 * 4 2 1 37 37 H 0.96996 * 119.99972 * 0.02562 * 8 6 5 38 38 H 1.09000 * 109.46748 * 59.99623 * 9 8 6 39 39 H 1.09004 * 109.46998 * 299.99872 * 9 8 6 40 40 H 1.08996 * 109.47280 * 60.00224 * 10 9 8 41 41 H 1.08993 * 109.46920 * 299.99706 * 10 9 8 42 42 H 1.09000 * 109.46753 * 59.99700 * 11 10 9 43 43 H 1.09004 * 109.46936 * 299.99984 * 11 10 9 44 44 H 1.07998 * 126.37852 * 0.02562 * 13 12 11 45 45 H 1.08000 * 127.24234 * 179.97438 * 14 13 12 46 46 H 0.96999 * 120.00200 * 359.97438 * 18 16 15 47 47 H 0.96995 * 119.99905 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6524 -1.9723 1.3383 7 8 0.9517 -2.5097 0.5035 8 7 2.0675 -2.6653 2.4171 9 6 1.6743 -4.0669 2.5831 10 6 2.2745 -4.6147 3.8795 11 6 1.8644 -6.0786 4.0525 12 7 2.4385 -6.6031 5.2940 13 6 1.7310 -7.1831 6.2874 14 6 2.6104 -7.5320 7.2554 15 6 3.8793 -7.1249 6.7785 16 6 5.1715 -7.2836 7.4738 17 8 5.2118 -7.8096 8.5695 18 7 6.3067 -6.8448 6.8948 19 6 7.5054 -6.9916 7.5400 20 1 7.5412 -7.4595 8.5128 21 6 8.6763 -6.5395 6.9426 22 7 8.6329 -5.9717 5.7586 23 14 10.3118 -6.7404 7.8226 24 1 10.0910 -7.4059 9.1317 25 1 11.2220 -7.5696 6.9925 26 1 10.9224 -5.4049 8.0436 27 7 3.6873 -6.5773 5.5943 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6765 1.9564 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6768 -1.7488 -1.2493 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 2.6265 -2.2362 3.0836 38 1 2.0415 -4.6497 1.7383 39 1 0.5874 -4.1366 2.6275 40 1 1.9076 -4.0320 4.7244 41 1 3.3612 -4.5451 3.8346 42 1 2.2316 -6.6610 3.2075 43 1 0.7776 -6.1486 4.0972 44 1 0.6625 -7.3394 6.3060 45 1 2.3900 -8.0180 8.1944 46 1 6.2746 -6.4250 6.0210 47 1 9.4499 -5.6559 5.3419 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143315940.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:46 Heat of formation + Delta-G solvation = -74.229198 kcal Electronic energy + Delta-G solvation = -28315.208456 eV Core-core repulsion = 24112.798513 eV Total energy + Delta-G solvation = -4202.409943 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.43793 -41.79787 -39.84346 -38.70762 -36.86270 -36.05863 -35.31138 -34.52829 -33.36782 -31.59475 -31.49822 -28.34986 -28.29361 -27.95765 -26.64656 -24.39265 -23.14319 -22.59600 -22.12971 -21.03999 -20.62436 -20.00244 -19.17673 -18.44765 -17.75799 -17.47962 -17.34479 -16.93402 -16.61083 -16.15831 -16.00640 -15.77753 -15.55867 -15.33973 -15.13560 -14.79575 -14.57305 -14.38955 -13.98662 -13.71683 -13.50261 -13.38674 -13.22871 -13.07292 -12.94835 -12.91964 -12.86079 -12.74744 -12.50456 -12.46352 -12.30984 -12.10977 -12.07026 -11.61872 -11.59048 -11.38619 -11.13561 -10.68294 -10.24444 -10.15704 -10.04283 -9.86813 -8.52686 -6.00072 0.75639 1.12528 1.33074 1.40986 1.48323 1.57144 1.72590 1.74237 2.28473 2.53534 3.10698 3.19610 3.28671 3.54725 3.75599 3.80053 3.81076 3.91678 3.95681 3.99440 4.14287 4.33843 4.40459 4.51239 4.56712 4.62102 4.63002 4.76178 4.77689 4.85941 4.88463 4.90709 4.92270 4.97351 5.04363 5.13598 5.23997 5.29083 5.35069 5.36490 5.49800 5.57129 5.93344 6.08693 6.34604 6.50122 6.99403 7.09973 7.30432 7.49475 8.01369 8.65010 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010871 B = 0.002123 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.048878 B =13186.126567 C =15355.059010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.124 3.876 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.374 6.374 6 C 0.646 3.354 7 O -0.590 6.590 8 N -0.707 5.707 9 C 0.148 3.852 10 C -0.138 4.138 11 C 0.120 3.880 12 N -0.283 5.283 13 C 0.010 3.990 14 C -0.216 4.216 15 C -0.024 4.024 16 C 0.506 3.494 17 O -0.632 6.632 18 N -0.547 5.547 19 C -0.339 4.339 20 H 0.086 0.914 21 C -0.012 4.012 22 N -0.913 5.913 23 Si 1.003 2.997 24 H -0.269 1.269 25 H -0.268 1.268 26 H -0.267 1.267 27 N -0.291 5.291 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.103 0.897 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.057 0.943 37 H 0.414 0.586 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.104 0.896 43 H 0.154 0.846 44 H 0.236 0.764 45 H 0.156 0.844 46 H 0.399 0.601 47 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.168 12.785 -15.311 28.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.088 3.912 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.288 6.288 6 C 0.399 3.601 7 O -0.481 6.481 8 N -0.367 5.367 9 C 0.026 3.974 10 C -0.176 4.176 11 C 0.001 3.999 12 N -0.071 5.071 13 C -0.133 4.133 14 C -0.245 4.245 15 C -0.183 4.183 16 C 0.293 3.707 17 O -0.519 6.519 18 N -0.181 5.181 19 C -0.469 4.469 20 H 0.104 0.896 21 C -0.213 4.213 22 N -0.553 5.553 23 Si 0.825 3.175 24 H -0.193 1.193 25 H -0.193 1.193 26 H -0.192 1.192 27 N -0.128 5.128 28 H 0.081 0.919 29 H 0.109 0.891 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.121 0.879 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.076 0.924 37 H 0.250 0.750 38 H 0.092 0.908 39 H 0.109 0.891 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.122 0.878 43 H 0.172 0.828 44 H 0.253 0.747 45 H 0.174 0.826 46 H 0.233 0.767 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.820 12.886 -16.208 28.664 hybrid contribution 0.938 -0.208 0.971 1.366 sum -18.882 12.678 -15.238 27.376 Atomic orbital electron populations 1.22462 0.93574 1.03838 1.03621 1.22422 0.94848 0.92562 0.81412 1.21900 1.02288 0.90943 1.04356 1.22479 1.01456 1.02361 0.97456 1.86326 1.71657 1.23341 1.47503 1.18223 0.78775 0.80810 0.82279 1.90889 1.42262 1.70939 1.44003 1.44763 1.55434 1.13031 1.23469 1.21199 1.00844 0.78400 0.96981 1.21926 1.02386 0.95326 0.97997 1.22221 1.01435 0.93965 0.82233 1.45892 1.02935 1.41542 1.16731 1.23450 1.00914 1.01013 0.87971 1.21947 0.90488 1.08951 1.03081 1.21998 0.95586 1.06634 0.94082 1.17258 0.83030 0.84335 0.86095 1.90543 1.86974 1.51383 1.23015 1.41849 1.05539 1.51223 1.19528 1.19883 0.84416 1.38965 1.03633 0.89561 1.26267 1.03098 0.95308 0.96639 1.69713 1.31053 1.38835 1.15706 0.84743 0.76078 0.78577 0.78121 1.19329 1.19266 1.19194 1.73528 1.01624 1.21556 1.16076 0.91948 0.89090 0.91643 0.91592 0.87863 0.91215 0.91714 0.89016 0.92387 0.75000 0.90805 0.89081 0.89861 0.91509 0.87761 0.82781 0.74736 0.82629 0.76683 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.63 8.37 71.98 0.60 -2.03 16 2 C 0.12 1.99 1.13 -10.79 -0.01 1.97 16 3 C -0.14 -1.48 8.85 71.98 0.64 -0.84 16 4 C -0.18 -2.91 8.37 71.98 0.60 -2.31 16 5 O -0.37 -7.68 9.94 -55.41 -0.55 -8.23 16 6 C 0.65 14.02 8.06 129.79 1.05 15.07 16 7 O -0.59 -14.89 11.88 19.80 0.24 -14.65 16 8 N -0.71 -12.24 5.56 -590.82 -3.29 -15.52 16 9 C 0.15 2.02 5.67 86.38 0.49 2.51 16 10 C -0.14 -2.08 5.43 30.60 0.17 -1.91 16 11 C 0.12 1.65 6.40 86.38 0.55 2.20 16 12 N -0.28 -7.14 3.41 -347.95 -1.19 -8.33 16 13 C 0.01 0.22 11.40 83.53 0.95 1.17 16 14 C -0.22 -7.44 10.81 22.42 0.24 -7.19 16 15 C -0.02 -1.06 7.13 42.43 0.30 -0.76 16 16 C 0.51 28.09 7.77 86.72 0.67 28.76 16 17 O -0.63 -38.78 16.50 -4.06 -0.07 -38.84 16 18 N -0.55 -31.60 5.28 -309.83 -1.63 -33.24 16 19 C -0.34 -20.44 9.68 84.09 0.81 -19.62 16 20 H 0.09 5.43 7.15 -2.91 -0.02 5.41 16 21 C -0.01 -0.69 5.50 84.94 0.47 -0.22 16 22 N -0.91 -51.40 13.05 21.67 0.28 -51.11 16 23 Si 1.00 43.79 29.55 68.60 2.03 45.82 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 26 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 27 N -0.29 -10.98 11.36 -48.20 -0.55 -11.53 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.06 1.29 5.88 -2.38 -0.01 1.28 16 31 H 0.06 0.74 8.14 -2.38 -0.02 0.73 16 32 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.06 1.37 5.88 -2.39 -0.01 1.36 16 35 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.41 6.36 8.58 -92.71 -0.80 5.57 16 38 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 40 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.07 1.44 8.08 -2.39 -0.02 1.42 16 42 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.15 0.62 8.04 -2.38 -0.02 0.60 16 44 H 0.24 2.32 8.06 -2.91 -0.02 2.30 16 45 H 0.16 5.18 8.06 -2.91 -0.02 5.15 16 46 H 0.40 22.61 7.62 -92.71 -0.71 21.91 16 47 H 0.28 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -83.87 397.65 2.31 -81.55 By element: Atomic # 1 Polarization: 37.78 SS G_CDS: -0.50 Total: 37.28 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: 7.54 Total: 16.81 kcal Atomic # 7 Polarization: -113.36 SS G_CDS: -6.37 Total: -119.73 kcal Atomic # 8 Polarization: -61.34 SS G_CDS: -0.38 Total: -61.73 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -83.87 2.31 -81.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143315940.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.324 kcal (2) G-P(sol) polarization free energy of solvation -83.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds