Wall clock time and date at job start Tue Mar 31 2020 20:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52995 * 109.47251 * 2 1 4 4 C 1.50707 * 109.47124 * 180.02562 * 3 2 1 5 5 N 1.30618 * 125.42477 * 89.97854 * 4 3 2 6 6 C 1.33693 * 108.99164 * 179.78809 * 5 4 3 7 7 C 1.50704 * 126.26848 * 180.25757 * 6 5 4 8 8 C 1.36335 * 107.45490 * 0.36509 * 6 5 4 9 9 C 1.46725 * 126.64382 * 179.90053 * 8 6 5 10 10 O 1.21683 * 119.99962 * 359.71329 * 9 8 6 11 11 N 1.34777 * 119.99832 * 179.71004 * 9 8 6 12 12 C 1.46499 * 119.99665 * 179.72438 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 N 1.46898 * 109.46947 * 180.02562 * 13 12 11 15 15 C 1.46904 * 110.99459 * 179.97438 * 14 13 12 16 16 C 1.50705 * 109.46807 * 179.97438 * 15 14 13 17 17 O 1.21290 * 120.00074 * 0.02562 * 16 15 14 18 18 N 1.34775 * 119.99911 * 179.97438 * 16 15 14 19 19 C 1.37094 * 120.00169 * 179.97438 * 18 16 15 20 20 H 1.07999 * 120.00091 * 0.02562 * 19 18 16 21 21 C 1.38953 * 120.00239 * 180.02562 * 19 18 16 22 22 N 1.31409 * 120.00067 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00103 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47049 * 59.99983 * 23 21 19 25 25 H 1.48492 * 109.47066 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.46841 * 300.00220 * 23 21 19 27 27 O 1.33663 * 125.41666 * 269.99463 * 4 3 2 28 28 H 1.08999 * 109.47194 * 300.00063 * 1 2 3 29 29 H 1.08996 * 109.47607 * 60.00400 * 1 2 3 30 30 H 1.09001 * 109.47270 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47106 * 239.99452 * 2 1 3 32 32 H 1.09001 * 109.47517 * 120.00081 * 2 1 3 33 33 H 1.08992 * 109.47359 * 60.00169 * 3 2 1 34 34 H 1.09001 * 109.47091 * 299.99913 * 3 2 1 35 35 H 1.09002 * 109.46788 * 270.12865 * 7 6 5 36 36 H 1.08994 * 109.47235 * 30.13179 * 7 6 5 37 37 H 1.09002 * 109.46931 * 150.13323 * 7 6 5 38 38 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 39 39 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 40 40 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 41 41 H 1.08995 * 109.46638 * 300.00121 * 13 12 11 42 42 H 1.09006 * 109.47139 * 60.00254 * 13 12 11 43 43 H 1.00894 * 111.00658 * 56.04933 * 14 13 12 44 44 H 1.08992 * 109.47591 * 299.99636 * 15 14 13 45 45 H 1.09001 * 109.47600 * 60.00212 * 15 14 13 46 46 H 0.97001 * 120.00445 * 0.02562 * 18 16 15 47 47 H 0.96999 * 120.00459 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.3037 1.4422 -1.0653 6 6 5.5861 1.4469 -0.6877 7 6 6.7846 1.4538 -1.6014 8 6 5.6110 1.4419 0.6754 9 6 6.8041 1.4424 1.5295 10 8 7.9122 1.4424 1.0268 11 7 6.6726 1.4429 2.8708 12 6 7.8639 1.4373 3.7236 13 6 7.4389 1.4321 5.1934 14 7 8.6335 1.4271 6.0484 15 6 8.2632 1.4227 7.4700 16 6 9.5116 1.4170 8.3142 17 8 10.6024 1.4171 7.7838 18 7 9.4160 1.4128 9.6585 19 6 10.5516 1.4071 10.4265 20 1 11.5229 1.4064 9.9543 21 6 10.4531 1.4023 11.8125 22 7 9.2713 1.4026 12.3872 23 14 12.0005 1.3952 12.8589 24 1 12.8052 2.6071 12.5607 25 1 11.6262 1.3901 14.2959 26 1 12.8000 0.1822 12.5518 27 8 4.3221 1.4423 1.0883 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6766 1.9563 -0.8900 35 1 7.0764 0.4277 -1.8255 36 1 6.5324 1.9703 -2.5274 37 1 7.6116 1.9681 -1.1120 38 1 5.7893 1.4426 3.2717 39 1 8.4568 0.5470 3.5137 40 1 8.4601 2.3269 3.5209 41 1 6.8461 2.3224 5.4032 42 1 6.8428 0.5424 5.3962 43 1 9.2348 2.2084 5.8342 44 1 7.6759 2.3128 7.6953 45 1 7.6729 0.5329 7.6890 46 1 8.5437 1.4131 10.0828 47 1 9.2024 1.3989 13.3547 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147940437.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:02 Heat of formation + Delta-G solvation = -65.227300 kcal Electronic energy + Delta-G solvation = -27500.364281 eV Core-core repulsion = 23298.344690 eV Total energy + Delta-G solvation = -4202.019592 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.87391 -39.86600 -38.34909 -36.50918 -36.01401 -35.62697 -34.42691 -33.77748 -32.04601 -31.26219 -29.80108 -28.87500 -27.56519 -25.91423 -24.04926 -23.19200 -22.44374 -21.93072 -21.74691 -20.86012 -19.32270 -18.55282 -17.91542 -17.38238 -16.49910 -16.41837 -16.22300 -15.88284 -15.68633 -15.18737 -14.94533 -14.70507 -14.51695 -14.05524 -14.01305 -13.83232 -13.59436 -13.49546 -13.40781 -13.18118 -12.87465 -12.66830 -12.47428 -12.26967 -11.98124 -11.96258 -11.56945 -11.51113 -11.48587 -11.41257 -11.33217 -11.23756 -11.02772 -10.49610 -10.45307 -10.23168 -9.55508 -9.52110 -9.12633 -8.53932 -8.17174 -7.98829 -6.43770 -3.84742 0.39940 1.92245 1.96936 2.71599 2.73592 3.19270 3.25090 3.29665 3.37614 3.87493 4.08181 4.20664 4.26488 4.30602 4.35588 4.43773 4.59168 4.78373 4.85545 4.91427 4.98158 5.08327 5.13646 5.14135 5.14388 5.23485 5.32079 5.34038 5.42665 5.46705 5.54502 5.59247 5.66908 5.67892 5.72456 5.81891 5.90266 5.92575 6.02727 6.21730 6.93410 7.05967 7.22064 7.51975 7.53327 7.69188 8.03576 8.58560 9.15550 9.51330 10.02646 10.73804 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019208 B = 0.001523 C = 0.001421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.340776 B =18377.502051 C =19698.765454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.028 4.028 4 C 0.225 3.775 5 N -0.487 5.487 6 C 0.085 3.915 7 C -0.082 4.082 8 C -0.121 4.121 9 C 0.610 3.390 10 O -0.509 6.509 11 N -0.716 5.716 12 C 0.119 3.881 13 C 0.049 3.951 14 N -0.665 5.665 15 C 0.052 3.948 16 C 0.439 3.561 17 O -0.582 6.582 18 N -0.562 5.562 19 C -0.301 4.301 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.932 3.068 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 O -0.188 6.188 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.404 0.596 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.034 0.966 42 H 0.078 0.922 43 H 0.353 0.647 44 H 0.045 0.955 45 H 0.087 0.913 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.980 0.277 -24.449 31.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.066 4.066 4 C 0.019 3.981 5 N -0.217 5.217 6 C -0.040 4.040 7 C -0.139 4.139 8 C -0.176 4.176 9 C 0.395 3.605 10 O -0.386 6.386 11 N -0.367 5.367 12 C -0.004 4.004 13 C -0.081 4.081 14 N -0.298 5.298 15 C -0.080 4.080 16 C 0.225 3.775 17 O -0.466 6.466 18 N -0.199 5.199 19 C -0.431 4.431 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.759 3.241 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 O -0.075 6.075 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.128 0.872 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.115 0.885 38 H 0.239 0.761 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.052 0.948 42 H 0.097 0.903 43 H 0.173 0.827 44 H 0.063 0.937 45 H 0.106 0.894 46 H 0.225 0.775 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.635 -0.397 -25.488 31.577 hybrid contribution -0.460 0.886 1.981 2.218 sum -19.096 0.489 -23.507 30.290 Atomic orbital electron populations 1.21751 0.94268 1.02544 1.02332 1.21551 0.96822 0.94275 1.03439 1.20340 0.80444 1.00019 1.05791 1.26578 0.96377 0.96556 0.78596 1.70368 1.01571 1.19871 1.29880 1.22108 0.93481 0.97093 0.91281 1.20420 0.92150 1.03895 0.97466 1.22879 0.82326 1.17187 0.95216 1.16234 0.85458 0.77292 0.81517 1.90892 1.23649 1.50353 1.73736 1.45792 1.10989 1.74499 1.05409 1.21399 0.86450 1.03959 0.88576 1.22076 0.93403 1.01196 0.91463 1.59937 1.15457 1.51638 1.02754 1.21673 0.97096 1.01372 0.87894 1.19759 0.89986 0.84708 0.83081 1.90534 1.28432 1.55376 1.72283 1.41844 1.09637 1.64282 1.04135 1.19671 0.87774 1.47775 0.87844 0.87914 1.25265 0.98263 0.97218 0.97122 1.69599 1.22918 1.50455 1.11340 0.85903 0.80989 0.79114 0.78137 1.19893 1.20974 1.19852 1.84435 1.16120 1.69586 1.37376 0.92212 0.92201 0.91967 0.90882 0.91209 0.88343 0.87154 0.89830 0.90381 0.88511 0.76097 0.89589 0.90760 0.94794 0.90336 0.82742 0.93670 0.89438 0.77452 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.44 9.91 37.15 0.37 -0.07 16 2 C -0.12 -0.51 5.92 -26.74 -0.16 -0.67 16 3 C -0.03 -0.13 5.84 -27.88 -0.16 -0.29 16 4 C 0.22 1.92 7.57 -12.79 -0.10 1.83 16 5 N -0.49 -5.14 11.26 -7.07 -0.08 -5.22 16 6 C 0.08 0.93 7.16 -82.47 -0.59 0.34 16 7 C -0.08 -0.75 9.87 36.01 0.36 -0.40 16 8 C -0.12 -1.33 7.18 -36.84 -0.26 -1.60 16 9 C 0.61 7.19 7.79 -12.83 -0.10 7.09 16 10 O -0.51 -7.26 14.80 5.20 0.08 -7.18 16 11 N -0.72 -7.02 5.55 -61.60 -0.34 -7.37 16 12 C 0.12 1.31 5.93 -4.04 -0.02 1.28 16 13 C 0.05 0.54 5.80 -3.82 -0.02 0.52 16 14 N -0.66 -10.25 6.13 -115.05 -0.70 -10.95 16 15 C 0.05 0.89 6.17 -4.97 -0.03 0.85 16 16 C 0.44 10.25 7.82 -10.98 -0.09 10.17 16 17 O -0.58 -15.75 15.78 5.55 0.09 -15.66 16 18 N -0.56 -14.12 5.29 -10.96 -0.06 -14.18 16 19 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 20 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 22 N -0.90 -24.33 13.05 55.50 0.72 -23.61 16 23 Si 0.93 20.97 29.55 -169.99 -5.02 15.94 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 O -0.19 -1.79 10.57 4.41 0.05 -1.74 16 28 H 0.06 0.15 8.14 -51.93 -0.42 -0.28 16 29 H 0.06 0.15 8.14 -51.93 -0.42 -0.28 16 30 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.11 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.10 0.97 6.47 -51.93 -0.34 0.63 16 38 H 0.40 3.10 8.27 -40.82 -0.34 2.76 16 39 H 0.09 1.07 8.14 -51.92 -0.42 0.65 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.35 5.62 8.43 -39.29 -0.33 5.29 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 46 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 47 H 0.27 6.96 8.31 -40.82 -0.34 6.63 16 LS Contribution 404.10 15.07 6.09 6.09 Total: -1.00 -33.85 404.10 -7.41 -41.26 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -7.18 Total: 11.57 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: -1.05 Total: 11.05 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: -0.46 Total: -61.32 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: 0.21 Total: -24.59 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.85 -7.41 -41.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147940437.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.963 kcal (2) G-P(sol) polarization free energy of solvation -33.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds