Wall clock time and date at job start Tue Mar 31 2020 20:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52995 * 109.47251 * 2 1 4 4 C 1.50707 * 109.47124 * 180.02562 * 3 2 1 5 5 N 1.30618 * 125.42477 * 89.97854 * 4 3 2 6 6 C 1.33693 * 108.99164 * 179.78809 * 5 4 3 7 7 C 1.50704 * 126.26848 * 180.25757 * 6 5 4 8 8 C 1.36335 * 107.45490 * 0.36509 * 6 5 4 9 9 C 1.46725 * 126.64382 * 179.90053 * 8 6 5 10 10 O 1.21683 * 119.99962 * 359.71329 * 9 8 6 11 11 N 1.34777 * 119.99832 * 179.71004 * 9 8 6 12 12 C 1.46499 * 119.99665 * 179.72438 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 N 1.46898 * 109.46947 * 180.02562 * 13 12 11 15 15 C 1.46904 * 110.99459 * 179.97438 * 14 13 12 16 16 C 1.50705 * 109.46807 * 179.97438 * 15 14 13 17 17 O 1.21290 * 120.00074 * 0.02562 * 16 15 14 18 18 N 1.34775 * 119.99911 * 179.97438 * 16 15 14 19 19 C 1.37094 * 120.00169 * 179.97438 * 18 16 15 20 20 H 1.07999 * 120.00091 * 0.02562 * 19 18 16 21 21 C 1.38953 * 120.00239 * 180.02562 * 19 18 16 22 22 N 1.31409 * 120.00067 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00103 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47049 * 59.99983 * 23 21 19 25 25 H 1.48492 * 109.47066 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.46841 * 300.00220 * 23 21 19 27 27 O 1.33663 * 125.41666 * 269.99463 * 4 3 2 28 28 H 1.08999 * 109.47194 * 300.00063 * 1 2 3 29 29 H 1.08996 * 109.47607 * 60.00400 * 1 2 3 30 30 H 1.09001 * 109.47270 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47106 * 239.99452 * 2 1 3 32 32 H 1.09001 * 109.47517 * 120.00081 * 2 1 3 33 33 H 1.08992 * 109.47359 * 60.00169 * 3 2 1 34 34 H 1.09001 * 109.47091 * 299.99913 * 3 2 1 35 35 H 1.09002 * 109.46788 * 270.12865 * 7 6 5 36 36 H 1.08994 * 109.47235 * 30.13179 * 7 6 5 37 37 H 1.09002 * 109.46931 * 150.13323 * 7 6 5 38 38 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 39 39 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 40 40 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 41 41 H 1.08995 * 109.46638 * 300.00121 * 13 12 11 42 42 H 1.09006 * 109.47139 * 60.00254 * 13 12 11 43 43 H 1.00894 * 111.00658 * 56.04933 * 14 13 12 44 44 H 1.08992 * 109.47591 * 299.99636 * 15 14 13 45 45 H 1.09001 * 109.47600 * 60.00212 * 15 14 13 46 46 H 0.97001 * 120.00445 * 0.02562 * 18 16 15 47 47 H 0.96999 * 120.00459 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.3037 1.4422 -1.0653 6 6 5.5861 1.4469 -0.6877 7 6 6.7846 1.4538 -1.6014 8 6 5.6110 1.4419 0.6754 9 6 6.8041 1.4424 1.5295 10 8 7.9122 1.4424 1.0268 11 7 6.6726 1.4429 2.8708 12 6 7.8639 1.4373 3.7236 13 6 7.4389 1.4321 5.1934 14 7 8.6335 1.4271 6.0484 15 6 8.2632 1.4227 7.4700 16 6 9.5116 1.4170 8.3142 17 8 10.6024 1.4171 7.7838 18 7 9.4160 1.4128 9.6585 19 6 10.5516 1.4071 10.4265 20 1 11.5229 1.4064 9.9543 21 6 10.4531 1.4023 11.8125 22 7 9.2713 1.4026 12.3872 23 14 12.0005 1.3952 12.8589 24 1 12.8052 2.6071 12.5607 25 1 11.6262 1.3901 14.2959 26 1 12.8000 0.1822 12.5518 27 8 4.3221 1.4423 1.0883 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6766 1.9563 -0.8900 35 1 7.0764 0.4277 -1.8255 36 1 6.5324 1.9703 -2.5274 37 1 7.6116 1.9681 -1.1120 38 1 5.7893 1.4426 3.2717 39 1 8.4568 0.5470 3.5137 40 1 8.4601 2.3269 3.5209 41 1 6.8461 2.3224 5.4032 42 1 6.8428 0.5424 5.3962 43 1 9.2348 2.2084 5.8342 44 1 7.6759 2.3128 7.6953 45 1 7.6729 0.5329 7.6890 46 1 8.5437 1.4131 10.0828 47 1 9.2024 1.3989 13.3547 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147940437.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:01 Heat of formation + Delta-G solvation = -93.597639 kcal Electronic energy + Delta-G solvation = -27501.594511 eV Core-core repulsion = 23298.344690 eV Total energy + Delta-G solvation = -4203.249822 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.61205 -40.79115 -40.14775 -37.61294 -36.62675 -36.23556 -35.97633 -35.25991 -33.27336 -32.72113 -30.88124 -29.44046 -28.47587 -27.35066 -25.60188 -23.85174 -23.31186 -22.76986 -22.26003 -21.64066 -21.10441 -19.92799 -19.40889 -18.13899 -17.79234 -17.38883 -17.21901 -17.01742 -16.56040 -16.22601 -16.10604 -15.90487 -15.59850 -15.35810 -15.30427 -14.88872 -14.50936 -14.37171 -14.22734 -14.08719 -14.00454 -13.52190 -13.38069 -13.31347 -13.10167 -12.94075 -12.70024 -12.62909 -12.47626 -12.42745 -12.33315 -12.12250 -12.08036 -11.98328 -11.64390 -11.50416 -11.39930 -10.45255 -10.36857 -10.01791 -9.90056 -9.40481 -8.46754 -5.95499 -0.38377 1.17590 1.21884 1.40183 1.42422 1.53047 1.85636 1.87957 2.05298 2.30203 2.74310 2.99705 3.20650 3.49264 3.54859 3.60778 3.83167 3.97497 4.02224 4.07196 4.13578 4.30850 4.31122 4.43507 4.47579 4.49823 4.60055 4.62747 4.64040 4.68712 4.79414 4.84275 4.87686 4.89057 4.91381 5.09930 5.19471 5.23130 5.28091 5.40914 5.44255 5.82182 6.05448 6.15633 6.31264 6.46655 6.60028 6.84361 7.12566 7.56083 8.11663 8.70225 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019208 B = 0.001523 C = 0.001421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.340776 B =18377.502051 C =19698.765454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.027 4.027 4 C 0.236 3.764 5 N -0.510 5.510 6 C 0.076 3.924 7 C -0.080 4.080 8 C -0.139 4.139 9 C 0.609 3.391 10 O -0.541 6.541 11 N -0.702 5.702 12 C 0.127 3.873 13 C 0.058 3.942 14 N -0.684 5.684 15 C 0.068 3.932 16 C 0.435 3.565 17 O -0.625 6.625 18 N -0.572 5.572 19 C -0.337 4.337 20 H 0.078 0.922 21 C -0.011 4.011 22 N -0.919 5.919 23 Si 0.992 3.008 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.273 1.273 27 O -0.187 6.187 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.417 0.583 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.057 0.943 42 H 0.093 0.907 43 H 0.347 0.653 44 H 0.073 0.927 45 H 0.109 0.891 46 H 0.397 0.603 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.237 0.497 -24.264 32.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.065 4.065 4 C 0.030 3.970 5 N -0.240 5.240 6 C -0.048 4.048 7 C -0.137 4.137 8 C -0.193 4.193 9 C 0.395 3.605 10 O -0.421 6.421 11 N -0.353 5.353 12 C 0.004 3.996 13 C -0.072 4.072 14 N -0.317 5.317 15 C -0.064 4.064 16 C 0.223 3.777 17 O -0.511 6.511 18 N -0.209 5.209 19 C -0.467 4.467 20 H 0.096 0.904 21 C -0.211 4.211 22 N -0.559 5.559 23 Si 0.816 3.184 24 H -0.197 1.197 25 H -0.194 1.194 26 H -0.198 1.198 27 O -0.074 6.074 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.254 0.746 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.111 0.889 43 H 0.166 0.834 44 H 0.091 0.909 45 H 0.127 0.873 46 H 0.231 0.769 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.956 -0.180 -25.294 32.847 hybrid contribution 0.147 0.807 1.836 2.010 sum -20.808 0.627 -23.458 31.363 Atomic orbital electron populations 1.21733 0.93009 1.02766 1.03080 1.21512 0.97783 0.93778 1.02653 1.20646 0.77620 1.00614 1.07597 1.27487 0.97631 0.93929 0.77916 1.70404 1.01536 1.21291 1.30791 1.22432 0.94186 0.96552 0.91680 1.20423 0.91370 1.04258 0.97639 1.22664 0.82699 1.18866 0.95103 1.16337 0.85333 0.76840 0.81958 1.90872 1.24890 1.51955 1.74380 1.45614 1.11321 1.73660 1.04726 1.21208 0.86631 1.02894 0.88900 1.22061 0.91966 1.02944 0.90190 1.59896 1.17542 1.51830 1.02429 1.21527 0.93722 1.03624 0.87571 1.20919 0.91665 0.82287 0.82878 1.90503 1.30948 1.56683 1.73003 1.41908 1.09130 1.64979 1.04888 1.19640 0.87919 1.50162 0.88946 0.90380 1.26015 1.01295 0.96192 0.97586 1.69654 1.24250 1.50148 1.11897 0.85000 0.77480 0.78913 0.77016 1.19723 1.19424 1.19838 1.84433 1.15570 1.69772 1.37624 0.91362 0.91558 0.92053 0.92047 0.91701 0.86050 0.85789 0.89273 0.89091 0.89586 0.74586 0.91278 0.91405 0.92483 0.88875 0.83386 0.90899 0.87318 0.76856 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 9.91 71.98 0.71 0.17 16 2 C -0.12 -0.79 5.92 30.59 0.18 -0.61 16 3 C -0.03 -0.18 5.84 29.85 0.17 -0.01 16 4 C 0.24 3.70 7.57 88.29 0.67 4.36 16 5 N -0.51 -10.36 11.26 -291.05 -3.28 -13.64 16 6 C 0.08 1.65 7.16 41.83 0.30 1.95 16 7 C -0.08 -1.48 9.87 71.24 0.70 -0.78 16 8 C -0.14 -2.99 7.18 24.05 0.17 -2.82 16 9 C 0.61 14.27 7.79 86.46 0.67 14.94 16 10 O -0.54 -15.80 14.80 -4.29 -0.06 -15.87 16 11 N -0.70 -12.98 5.55 -467.03 -2.59 -15.57 16 12 C 0.13 2.68 5.93 86.38 0.51 3.19 16 13 C 0.06 1.13 5.80 86.30 0.50 1.63 16 14 N -0.68 -20.13 6.13 -517.92 -3.17 -23.31 16 15 C 0.07 2.16 6.17 85.56 0.53 2.69 16 16 C 0.43 20.31 7.82 87.66 0.69 21.00 16 17 O -0.62 -34.52 15.78 -3.06 -0.05 -34.57 16 18 N -0.57 -28.90 5.29 -306.98 -1.62 -30.52 16 19 C -0.34 -19.07 9.68 84.04 0.81 -18.26 16 20 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 21 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 22 N -0.92 -48.97 13.05 21.66 0.28 -48.68 16 23 Si 0.99 42.71 29.55 68.60 2.03 44.74 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 26 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 27 O -0.19 -3.30 10.57 -7.15 -0.08 -3.38 16 28 H 0.07 0.15 8.14 -2.39 -0.02 0.13 16 29 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.09 1.78 6.47 -2.39 -0.02 1.77 16 38 H 0.42 5.54 8.27 -92.71 -0.77 4.78 16 39 H 0.07 1.71 8.14 -2.38 -0.02 1.70 16 40 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 43 H 0.35 10.88 8.43 -89.70 -0.76 10.12 16 44 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 46 H 0.40 18.87 7.90 -92.71 -0.73 18.14 16 47 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -74.30 404.10 -2.68 -76.98 By element: Atomic # 1 Polarization: 37.70 SS G_CDS: -1.23 Total: 36.46 kcal Atomic # 6 Polarization: 20.27 SS G_CDS: 7.09 Total: 27.36 kcal Atomic # 7 Polarization: -121.34 SS G_CDS: -10.38 Total: -131.73 kcal Atomic # 8 Polarization: -53.63 SS G_CDS: -0.19 Total: -53.82 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -74.30 -2.68 -76.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147940437.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.613 kcal (2) G-P(sol) polarization free energy of solvation -74.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds