Wall clock time and date at job start Tue Mar 31 2020 20:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47023 * 2 1 4 4 N 1.29933 * 125.37805 * 89.99467 * 3 2 1 5 5 C 1.36067 * 108.47372 * 179.97438 * 4 3 2 6 6 C 1.47425 * 126.44626 * 180.02562 * 5 4 3 7 7 O 1.21613 * 120.00006 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99743 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72398 * 8 6 5 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 C 1.52997 * 109.47000 * 179.97438 * 10 9 8 12 12 N 1.46904 * 109.46983 * 179.97438 * 11 10 9 13 13 C 1.46903 * 111.00204 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.46998 * 179.97438 * 13 12 11 15 15 O 1.21295 * 120.00000 * 0.02562 * 14 13 12 16 16 N 1.34775 * 119.99798 * 179.97438 * 14 13 12 17 17 C 1.37094 * 120.00027 * 180.02562 * 16 14 13 18 18 H 1.07996 * 120.00216 * 0.02562 * 17 16 14 19 19 C 1.38956 * 120.00110 * 180.02562 * 17 16 14 20 20 N 1.31408 * 119.99736 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00089 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47206 * 89.99962 * 21 19 17 23 23 H 1.48498 * 109.46991 * 210.00427 * 21 19 17 24 24 H 1.48499 * 109.46978 * 330.00358 * 21 19 17 25 25 C 1.36084 * 107.10479 * 0.26712 * 5 4 3 26 26 C 1.50708 * 126.52553 * 179.73899 * 25 5 4 27 27 O 1.34057 * 125.37580 * 269.95854 * 3 2 1 28 28 H 1.08995 * 109.47371 * 300.00205 * 1 2 3 29 29 H 1.09004 * 109.46802 * 60.00436 * 1 2 3 30 30 H 1.09001 * 109.47344 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47371 * 239.99795 * 2 1 3 32 32 H 1.08991 * 109.47138 * 119.99684 * 2 1 3 33 33 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 34 34 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 35 35 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 36 36 H 1.08995 * 109.46638 * 300.00121 * 10 9 8 37 37 H 1.09006 * 109.47139 * 60.00254 * 10 9 8 38 38 H 1.08995 * 109.47672 * 299.99669 * 11 10 9 39 39 H 1.09007 * 109.47288 * 60.00489 * 11 10 9 40 40 H 1.00901 * 110.99709 * 56.04986 * 12 11 10 41 41 H 1.08999 * 109.46830 * 300.00221 * 13 12 11 42 42 H 1.09000 * 109.46616 * 60.00377 * 13 12 11 43 43 H 0.97003 * 119.99741 * 0.02562 * 16 14 13 44 44 H 0.97007 * 120.00002 * 179.97438 * 20 19 17 45 45 H 1.08994 * 109.46849 * 89.99572 * 26 25 5 46 46 H 1.08994 * 109.46966 * 209.99933 * 26 25 5 47 47 H 1.08999 * 109.46502 * 329.99791 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2830 2.1302 1.0594 5 6 2.7175 3.3574 0.6638 6 6 3.1123 4.4723 1.5438 7 8 3.4845 5.5250 1.0617 8 7 3.0608 4.3249 2.8825 9 6 3.4590 5.4308 3.7569 10 6 3.3142 5.0027 5.2187 11 6 3.7306 6.1575 6.1319 12 7 3.5910 5.7467 7.5354 13 6 3.9824 6.8331 8.4434 14 6 3.8257 6.3758 9.8708 15 8 3.4276 5.2549 10.1083 16 7 4.1289 7.2119 10.8834 17 6 3.9868 6.7958 12.1819 18 1 3.6324 5.7978 12.3934 19 6 4.2989 7.6580 13.2259 20 7 4.7296 8.8725 12.9686 21 14 4.1047 7.0912 14.9952 22 1 5.3720 6.4708 15.4582 23 1 3.7809 8.2573 15.8558 24 1 3.0067 6.0949 15.0781 25 6 2.7138 3.3637 -0.6971 26 6 3.1118 4.5109 -1.5898 27 8 2.2918 2.1523 -1.0931 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8899 33 1 2.7643 3.4852 3.2670 34 1 4.4972 5.6964 3.5572 35 1 2.8202 6.2932 3.5660 36 1 2.2761 4.7373 5.4183 37 1 3.9530 4.1404 5.4097 38 1 4.7688 6.4226 5.9321 39 1 3.0921 7.0201 5.9410 40 1 4.1231 4.9099 7.7218 41 1 5.0224 7.1030 8.2600 42 1 3.3456 7.7002 8.2681 43 1 4.4476 8.1082 10.6934 44 1 4.9471 9.4746 13.6974 45 1 4.1776 4.4477 -1.8091 46 1 2.5458 4.4607 -2.5199 47 1 2.8999 5.4538 -1.0858 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168129480.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:24 Heat of formation + Delta-G solvation = -68.091889 kcal Electronic energy + Delta-G solvation = -27279.165616 eV Core-core repulsion = 23077.021806 eV Total energy + Delta-G solvation = -4202.143809 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.89039 -39.79940 -38.30224 -36.57805 -35.54107 -34.85983 -34.56661 -33.82672 -32.09425 -31.48609 -31.09630 -27.98159 -26.95881 -25.33944 -24.52173 -23.52953 -22.77954 -21.72530 -21.53867 -20.52440 -19.21824 -18.26128 -17.84909 -17.43373 -16.51315 -16.24567 -16.14782 -15.84454 -15.35802 -15.17090 -14.99806 -14.60272 -14.43194 -14.29783 -14.11079 -13.82610 -13.63645 -13.47272 -13.36166 -13.11055 -12.89891 -12.86694 -12.30841 -12.07653 -11.84670 -11.80939 -11.77200 -11.63882 -11.45978 -11.41017 -11.20772 -11.06907 -10.92108 -10.40785 -10.38209 -10.20486 -9.49768 -9.44321 -9.11833 -8.45570 -8.05475 -7.94647 -6.40480 -3.81285 0.67239 1.57663 2.00256 2.78313 2.96895 3.18899 3.27452 3.33627 3.39004 3.92354 4.09945 4.12630 4.30762 4.34582 4.46436 4.54551 4.70482 4.81216 4.83876 4.95502 5.01592 5.03579 5.07849 5.19337 5.21002 5.27240 5.32114 5.42810 5.43602 5.49696 5.53456 5.60425 5.63127 5.70841 5.81002 5.98404 6.00642 6.05272 6.17340 6.28536 6.96831 7.21381 7.28177 7.56418 7.66488 7.85759 8.07674 8.62685 9.19127 9.55716 10.07241 10.77260 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023425 B = 0.001391 C = 0.001321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.012502 B =20118.324020 C =21193.966056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.026 4.026 3 C 0.197 3.803 4 N -0.457 5.457 5 C -0.078 4.078 6 C 0.603 3.397 7 O -0.536 6.536 8 N -0.710 5.710 9 C 0.121 3.879 10 C -0.130 4.130 11 C 0.063 3.937 12 N -0.670 5.670 13 C 0.051 3.949 14 C 0.441 3.559 15 O -0.584 6.584 16 N -0.564 5.564 17 C -0.300 4.300 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.931 3.069 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.269 1.269 25 C 0.041 3.959 26 C -0.077 4.077 27 O -0.196 6.196 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.410 0.590 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.030 0.970 39 H 0.074 0.926 40 H 0.349 0.651 41 H 0.044 0.956 42 H 0.086 0.914 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.092 0.908 46 H 0.080 0.920 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.026 -12.185 -31.601 34.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.065 4.065 3 C -0.013 4.013 4 N -0.186 5.186 5 C -0.198 4.198 6 C 0.389 3.611 7 O -0.414 6.414 8 N -0.361 5.361 9 C -0.003 4.003 10 C -0.168 4.168 11 C -0.067 4.067 12 N -0.302 5.302 13 C -0.082 4.082 14 C 0.226 3.774 15 O -0.468 6.468 16 N -0.200 5.200 17 C -0.430 4.430 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.543 5.543 21 Si 0.758 3.242 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.015 4.015 26 C -0.133 4.133 27 O -0.084 6.084 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.128 0.872 33 H 0.246 0.754 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.048 0.952 39 H 0.093 0.907 40 H 0.168 0.832 41 H 0.062 0.938 42 H 0.105 0.895 43 H 0.226 0.774 44 H 0.081 0.919 45 H 0.111 0.889 46 H 0.099 0.901 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.714 -12.071 -30.964 33.567 hybrid contribution 1.068 0.170 0.278 1.117 sum -3.646 -11.901 -30.687 33.115 Atomic orbital electron populations 1.21802 0.92808 1.03263 1.03108 1.20138 0.97061 0.83740 1.05514 1.26261 0.99908 0.96923 0.78164 1.70730 1.15417 1.02508 1.29972 1.21465 1.11455 0.94568 0.92293 1.16669 0.77539 0.85062 0.81866 1.90790 1.48043 1.27296 1.75261 1.45790 1.66851 1.18181 1.05292 1.21398 1.00929 0.89180 0.88784 1.21747 1.03760 0.99222 0.92070 1.21821 0.99173 0.97402 0.88301 1.60045 1.62369 1.06642 1.01163 1.21671 0.99056 0.94877 0.92594 1.19817 0.84677 0.86864 0.86043 1.90520 1.50932 1.20715 1.84626 1.41863 1.58019 1.14747 1.05411 1.19713 1.41640 1.00616 0.80995 0.87913 1.25264 0.97060 0.95169 1.00449 1.69615 1.44975 1.06236 1.33483 0.85849 0.78784 0.78068 0.81531 1.20440 1.20925 1.19409 1.23764 0.97637 0.85590 0.94535 1.20616 1.02646 0.92296 0.97751 1.84335 1.63907 1.22123 1.37999 0.91539 0.92148 0.90625 0.88689 0.87248 0.75387 0.91146 0.90903 0.90002 0.91155 0.95210 0.90742 0.83162 0.93811 0.89539 0.77441 0.91882 0.88918 0.90080 0.86857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 9.89 37.16 0.37 -0.20 16 2 C -0.03 -0.11 6.56 -27.88 -0.18 -0.30 16 3 C 0.20 1.63 7.56 -13.08 -0.10 1.53 16 4 N -0.46 -4.71 11.06 -7.65 -0.08 -4.79 16 5 C -0.08 -0.85 6.99 -83.02 -0.58 -1.43 16 6 C 0.60 7.12 7.81 -12.52 -0.10 7.03 16 7 O -0.54 -7.27 14.81 5.27 0.08 -7.19 16 8 N -0.71 -7.31 5.55 -61.38 -0.34 -7.65 16 9 C 0.12 1.19 5.67 -4.04 -0.02 1.17 16 10 C -0.13 -1.31 5.59 -26.73 -0.15 -1.46 16 11 C 0.06 0.76 5.69 -3.82 -0.02 0.73 16 12 N -0.67 -10.82 6.12 -115.05 -0.70 -11.52 16 13 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 14 C 0.44 10.54 7.82 -10.99 -0.09 10.45 16 15 O -0.58 -16.04 15.78 5.54 0.09 -15.95 16 16 N -0.56 -14.45 5.29 -10.96 -0.06 -14.51 16 17 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 18 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 19 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 20 N -0.90 -24.68 13.05 55.50 0.72 -23.96 16 21 Si 0.93 21.18 29.55 -169.99 -5.02 16.15 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 C 0.04 0.39 7.44 -35.08 -0.26 0.13 16 26 C -0.08 -0.51 9.87 36.01 0.36 -0.15 16 27 O -0.20 -1.73 10.73 6.50 0.07 -1.66 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.41 3.84 8.20 -40.82 -0.33 3.51 16 34 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.35 5.77 8.43 -39.29 -0.33 5.44 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 44 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 45 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.11 0.88 6.49 -51.93 -0.34 0.55 16 LS Contribution 404.12 15.07 6.09 6.09 Total: -1.00 -34.50 404.12 -7.39 -41.89 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -7.18 Total: 12.84 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: -1.05 Total: 10.26 kcal Atomic # 7 Polarization: -61.96 SS G_CDS: -0.46 Total: -62.43 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: 0.24 Total: -24.80 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.50 -7.39 -41.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168129480.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.207 kcal (2) G-P(sol) polarization free energy of solvation -34.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds