Wall clock time and date at job start Tue Mar 31 2020 20:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47023 * 2 1 4 4 N 1.29933 * 125.37805 * 89.99467 * 3 2 1 5 5 C 1.36067 * 108.47372 * 179.97438 * 4 3 2 6 6 C 1.47425 * 126.44626 * 180.02562 * 5 4 3 7 7 O 1.21613 * 120.00006 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99743 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72398 * 8 6 5 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 C 1.52997 * 109.47000 * 179.97438 * 10 9 8 12 12 N 1.46904 * 109.46983 * 179.97438 * 11 10 9 13 13 C 1.46903 * 111.00204 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.46998 * 179.97438 * 13 12 11 15 15 O 1.21295 * 120.00000 * 0.02562 * 14 13 12 16 16 N 1.34775 * 119.99798 * 179.97438 * 14 13 12 17 17 C 1.37094 * 120.00027 * 180.02562 * 16 14 13 18 18 H 1.07996 * 120.00216 * 0.02562 * 17 16 14 19 19 C 1.38956 * 120.00110 * 180.02562 * 17 16 14 20 20 N 1.31408 * 119.99736 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00089 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47206 * 89.99962 * 21 19 17 23 23 H 1.48498 * 109.46991 * 210.00427 * 21 19 17 24 24 H 1.48499 * 109.46978 * 330.00358 * 21 19 17 25 25 C 1.36084 * 107.10479 * 0.26712 * 5 4 3 26 26 C 1.50708 * 126.52553 * 179.73899 * 25 5 4 27 27 O 1.34057 * 125.37580 * 269.95854 * 3 2 1 28 28 H 1.08995 * 109.47371 * 300.00205 * 1 2 3 29 29 H 1.09004 * 109.46802 * 60.00436 * 1 2 3 30 30 H 1.09001 * 109.47344 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47371 * 239.99795 * 2 1 3 32 32 H 1.08991 * 109.47138 * 119.99684 * 2 1 3 33 33 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 34 34 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 35 35 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 36 36 H 1.08995 * 109.46638 * 300.00121 * 10 9 8 37 37 H 1.09006 * 109.47139 * 60.00254 * 10 9 8 38 38 H 1.08995 * 109.47672 * 299.99669 * 11 10 9 39 39 H 1.09007 * 109.47288 * 60.00489 * 11 10 9 40 40 H 1.00901 * 110.99709 * 56.04986 * 12 11 10 41 41 H 1.08999 * 109.46830 * 300.00221 * 13 12 11 42 42 H 1.09000 * 109.46616 * 60.00377 * 13 12 11 43 43 H 0.97003 * 119.99741 * 0.02562 * 16 14 13 44 44 H 0.97007 * 120.00002 * 179.97438 * 20 19 17 45 45 H 1.08994 * 109.46849 * 89.99572 * 26 25 5 46 46 H 1.08994 * 109.46966 * 209.99933 * 26 25 5 47 47 H 1.08999 * 109.46502 * 329.99791 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2830 2.1302 1.0594 5 6 2.7175 3.3574 0.6638 6 6 3.1123 4.4723 1.5438 7 8 3.4845 5.5250 1.0617 8 7 3.0608 4.3249 2.8825 9 6 3.4590 5.4308 3.7569 10 6 3.3142 5.0027 5.2187 11 6 3.7306 6.1575 6.1319 12 7 3.5910 5.7467 7.5354 13 6 3.9824 6.8331 8.4434 14 6 3.8257 6.3758 9.8708 15 8 3.4276 5.2549 10.1083 16 7 4.1289 7.2119 10.8834 17 6 3.9868 6.7958 12.1819 18 1 3.6324 5.7978 12.3934 19 6 4.2989 7.6580 13.2259 20 7 4.7296 8.8725 12.9686 21 14 4.1047 7.0912 14.9952 22 1 5.3720 6.4708 15.4582 23 1 3.7809 8.2573 15.8558 24 1 3.0067 6.0949 15.0781 25 6 2.7138 3.3637 -0.6971 26 6 3.1118 4.5109 -1.5898 27 8 2.2918 2.1523 -1.0931 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8899 33 1 2.7643 3.4852 3.2670 34 1 4.4972 5.6964 3.5572 35 1 2.8202 6.2932 3.5660 36 1 2.2761 4.7373 5.4183 37 1 3.9530 4.1404 5.4097 38 1 4.7688 6.4226 5.9321 39 1 3.0921 7.0201 5.9410 40 1 4.1231 4.9099 7.7218 41 1 5.0224 7.1030 8.2600 42 1 3.3456 7.7002 8.2681 43 1 4.4476 8.1082 10.6934 44 1 4.9471 9.4746 13.6974 45 1 4.1776 4.4477 -1.8091 46 1 2.5458 4.4607 -2.5199 47 1 2.8999 5.4538 -1.0858 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168129480.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:23 Heat of formation + Delta-G solvation = -96.900500 kcal Electronic energy + Delta-G solvation = -27280.414851 eV Core-core repulsion = 23077.021806 eV Total energy + Delta-G solvation = -4203.393045 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.56294 -40.68245 -40.15264 -37.68931 -36.26262 -36.07211 -35.64002 -35.08502 -33.29597 -32.63602 -32.38643 -28.97611 -28.04265 -26.60527 -25.56269 -24.54313 -23.57886 -22.62490 -22.24020 -21.33357 -21.02375 -19.90891 -19.01259 -18.11347 -17.86958 -17.27218 -17.05581 -16.90257 -16.63343 -16.35992 -15.97564 -15.71042 -15.56248 -15.48260 -15.07545 -15.05370 -14.66770 -14.37713 -14.30815 -14.11387 -13.58891 -13.54073 -13.37728 -13.35769 -13.20146 -12.86739 -12.72058 -12.62780 -12.45896 -12.41466 -12.39611 -12.11703 -12.06662 -11.92758 -11.87408 -11.50715 -11.28635 -10.35803 -10.28184 -10.01876 -9.82057 -9.33487 -8.46766 -5.95741 -0.04536 0.87271 1.38377 1.38628 1.42195 1.55163 1.98074 2.04909 2.13209 2.29733 2.77839 2.94981 3.20494 3.50585 3.51691 3.63252 3.98049 4.05584 4.11154 4.16246 4.20827 4.22942 4.33355 4.34763 4.48413 4.52523 4.54528 4.55917 4.58788 4.66944 4.75860 4.84363 4.96059 4.98750 5.03121 5.06132 5.14044 5.18067 5.32027 5.34363 5.40854 5.88331 6.09811 6.21918 6.40380 6.51712 6.59891 7.00144 7.12283 7.55874 8.11141 8.70575 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023425 B = 0.001391 C = 0.001321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.012502 B =20118.324020 C =21193.966056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.026 4.026 3 C 0.200 3.800 4 N -0.480 5.480 5 C -0.107 4.107 6 C 0.599 3.401 7 O -0.560 6.560 8 N -0.706 5.706 9 C 0.127 3.873 10 C -0.117 4.117 11 C 0.065 3.935 12 N -0.685 5.685 13 C 0.065 3.935 14 C 0.436 3.564 15 O -0.624 6.624 16 N -0.573 5.573 17 C -0.337 4.337 18 H 0.079 0.921 19 C -0.012 4.012 20 N -0.920 5.920 21 Si 0.994 3.006 22 H -0.270 1.270 23 H -0.270 1.270 24 H -0.273 1.273 25 C 0.042 3.958 26 C -0.075 4.075 27 O -0.197 6.197 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.414 0.586 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.045 0.955 39 H 0.081 0.919 40 H 0.345 0.655 41 H 0.068 0.932 42 H 0.104 0.896 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.104 0.896 46 H 0.104 0.896 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.936 -12.638 -32.667 35.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.064 4.064 3 C -0.010 4.010 4 N -0.210 5.210 5 C -0.225 4.225 6 C 0.386 3.614 7 O -0.440 6.440 8 N -0.356 5.356 9 C 0.004 3.996 10 C -0.155 4.155 11 C -0.064 4.064 12 N -0.318 5.318 13 C -0.068 4.068 14 C 0.224 3.776 15 O -0.511 6.511 16 N -0.210 5.210 17 C -0.466 4.466 18 H 0.097 0.903 19 C -0.212 4.212 20 N -0.561 5.561 21 Si 0.818 3.182 22 H -0.196 1.196 23 H -0.195 1.195 24 H -0.198 1.198 25 C -0.015 4.015 26 C -0.131 4.131 27 O -0.084 6.084 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.115 0.885 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.251 0.749 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.063 0.937 39 H 0.100 0.900 40 H 0.163 0.837 41 H 0.086 0.914 42 H 0.123 0.877 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.619 -12.506 -32.039 34.702 hybrid contribution 1.014 0.260 0.534 1.175 sum -3.606 -12.246 -31.505 33.993 Atomic orbital electron populations 1.21789 0.92340 1.04356 1.02157 1.20418 0.97281 0.81563 1.07127 1.27134 0.98398 0.97861 0.77580 1.70705 1.16632 1.02641 1.31004 1.21482 1.13208 0.94884 0.92966 1.16852 0.77238 0.85085 0.82258 1.90766 1.49313 1.28191 1.75696 1.45773 1.66383 1.18422 1.05035 1.21319 1.00921 0.88975 0.88401 1.21592 1.03424 0.98744 0.91738 1.21888 1.00327 0.98180 0.86043 1.60044 1.62657 1.06110 1.02954 1.21537 1.00975 0.95616 0.88649 1.20905 0.82608 0.85966 0.88132 1.90487 1.52286 1.22487 1.85803 1.41933 1.58628 1.15205 1.05230 1.19689 1.43761 1.00306 0.82849 0.90305 1.26050 0.96057 0.95104 1.04010 1.69674 1.44709 1.06790 1.34891 0.84912 0.78740 0.77882 0.76695 1.19566 1.19517 1.19826 1.24217 0.96565 0.86188 0.94500 1.20694 1.03681 0.90613 0.98070 1.84362 1.63902 1.21995 1.38180 0.93154 0.92411 0.88497 0.86292 0.86355 0.74918 0.91043 0.91050 0.90581 0.90721 0.93727 0.90023 0.83651 0.91412 0.87748 0.76935 0.91278 0.87754 0.87714 0.88137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.89 71.98 0.71 -0.19 16 2 C -0.03 -0.18 6.56 29.85 0.20 0.02 16 3 C 0.20 3.13 7.56 88.39 0.67 3.80 16 4 N -0.48 -9.83 11.06 -293.02 -3.24 -13.07 16 5 C -0.11 -2.34 6.99 40.41 0.28 -2.06 16 6 C 0.60 14.27 7.81 86.66 0.68 14.95 16 7 O -0.56 -15.30 14.81 -4.07 -0.06 -15.36 16 8 N -0.71 -14.39 5.55 -466.35 -2.59 -16.97 16 9 C 0.13 2.40 5.67 86.38 0.49 2.89 16 10 C -0.12 -2.22 5.59 30.59 0.17 -2.05 16 11 C 0.06 1.43 5.69 86.30 0.49 1.92 16 12 N -0.69 -21.34 6.12 -517.92 -3.17 -24.51 16 13 C 0.06 2.22 6.17 85.56 0.53 2.74 16 14 C 0.44 20.99 7.82 87.66 0.69 21.68 16 15 O -0.62 -34.99 15.78 -3.07 -0.05 -35.04 16 16 N -0.57 -29.70 5.29 -306.99 -1.62 -31.32 16 17 C -0.34 -19.32 9.68 84.04 0.81 -18.50 16 18 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 19 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 20 N -0.92 -49.87 13.05 21.66 0.28 -49.59 16 21 Si 0.99 43.15 29.55 68.60 2.03 45.18 16 22 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 25 C 0.04 0.77 7.44 25.19 0.19 0.96 16 26 C -0.07 -0.92 9.87 71.24 0.70 -0.22 16 27 O -0.20 -3.27 10.73 0.33 0.00 -3.27 16 28 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.41 7.73 8.20 -92.71 -0.76 6.97 16 34 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.07 1.37 8.14 -2.38 -0.02 1.36 16 38 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 40 H 0.34 11.19 8.43 -89.69 -0.76 10.44 16 41 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 43 H 0.40 19.47 7.90 -92.71 -0.73 18.74 16 44 H 0.28 14.08 8.31 -92.70 -0.77 13.31 16 45 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.10 1.56 6.49 -2.39 -0.02 1.54 16 Total: -1.00 -75.10 404.12 -2.57 -77.67 By element: Atomic # 1 Polarization: 41.77 SS G_CDS: -1.23 Total: 40.54 kcal Atomic # 6 Polarization: 18.66 SS G_CDS: 7.07 Total: 25.74 kcal Atomic # 7 Polarization: -125.11 SS G_CDS: -10.34 Total: -135.45 kcal Atomic # 8 Polarization: -53.56 SS G_CDS: -0.11 Total: -53.67 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -75.10 -2.57 -77.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168129480.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.231 kcal (2) G-P(sol) polarization free energy of solvation -75.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds