Wall clock time and date at job start Tue Mar 31 2020 20:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47138 * 2 1 4 4 C 1.50700 * 109.47152 * 179.97438 * 3 2 1 5 5 C 1.35320 * 126.66312 * 90.26168 * 4 3 2 6 6 C 1.42274 * 103.91678 * 180.11044 * 5 4 3 7 7 C 1.48336 * 126.93448 * 179.91290 * 6 5 4 8 8 O 1.21494 * 119.99933 * 359.70492 * 7 6 5 9 9 N 1.34777 * 119.99811 * 179.71121 * 7 6 5 10 10 C 1.46496 * 119.99613 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.46846 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47294 * 179.97438 * 11 10 9 13 13 N 1.46894 * 109.47127 * 180.02562 * 12 11 10 14 14 C 1.46901 * 110.99811 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47185 * 180.02562 * 14 13 12 16 16 O 1.21299 * 120.00108 * 359.97438 * 15 14 13 17 17 N 1.34781 * 120.00125 * 180.02562 * 15 14 13 18 18 C 1.37101 * 119.99811 * 180.02562 * 17 15 14 19 19 H 1.07996 * 120.00073 * 359.97438 * 18 17 15 20 20 C 1.38954 * 119.99517 * 179.97438 * 18 17 15 21 21 N 1.31411 * 120.00379 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99754 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46942 * 90.00134 * 22 20 18 24 24 H 1.48499 * 109.47560 * 209.99858 * 22 20 18 25 25 H 1.48501 * 109.47285 * 330.00295 * 22 20 18 26 26 N 1.30981 * 106.12641 * 359.64730 * 6 5 4 27 27 O 1.20910 * 111.43698 * 0.22425 * 26 6 5 28 28 H 1.09003 * 109.47293 * 300.00338 * 1 2 3 29 29 H 1.09007 * 109.46799 * 60.00321 * 1 2 3 30 30 H 1.08998 * 109.47452 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47386 * 240.00143 * 2 1 3 32 32 H 1.08997 * 109.47176 * 120.00060 * 2 1 3 33 33 H 1.08998 * 109.46865 * 59.99824 * 3 2 1 34 34 H 1.08997 * 109.47136 * 300.00084 * 3 2 1 35 35 H 1.08002 * 128.04189 * 0.02562 * 5 4 3 36 36 H 0.96996 * 119.99871 * 359.97438 * 9 7 6 37 37 H 1.09002 * 109.47226 * 299.99334 * 10 9 7 38 38 H 1.08999 * 109.47406 * 59.99933 * 10 9 7 39 39 H 1.08995 * 109.47938 * 299.99929 * 11 10 9 40 40 H 1.09004 * 109.47171 * 59.99908 * 11 10 9 41 41 H 1.09002 * 109.47200 * 300.00133 * 12 11 10 42 42 H 1.08996 * 109.47037 * 59.99695 * 12 11 10 43 43 H 1.00898 * 111.00657 * 56.04978 * 13 12 11 44 44 H 1.08995 * 109.47240 * 299.99735 * 14 13 12 45 45 H 1.09007 * 109.47195 * 60.00089 * 14 13 12 46 46 H 0.97000 * 119.99849 * 0.02562 * 17 15 14 47 47 H 0.96997 * 119.99886 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3555 1.4473 -1.0845 6 6 5.6673 1.4423 -0.5339 7 6 6.9481 1.4426 -1.2821 8 8 6.9418 1.4423 -2.4971 9 7 8.1187 1.4433 -0.6143 10 6 9.3836 1.4442 -1.3533 11 6 10.5516 1.4454 -0.3651 12 6 11.8728 1.4457 -1.1369 13 7 12.9941 1.4463 -0.1880 14 6 14.2819 1.4460 -0.8950 15 6 15.4059 1.4459 0.1088 16 8 15.1587 1.4465 1.2963 17 7 16.6861 1.4462 -0.3130 18 6 17.7087 1.4456 0.6002 19 1 17.4885 1.4453 1.6574 20 6 19.0284 1.4453 0.1653 21 7 19.2963 1.4462 -1.1212 22 14 20.4217 1.4452 1.4094 23 1 20.7907 0.0451 1.7392 24 1 21.5987 2.1450 0.8347 25 1 19.9835 2.1454 2.6435 26 7 5.5158 1.4430 0.7672 27 8 4.3468 1.4432 1.0759 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 4.0710 1.4523 -2.1264 36 1 8.1237 1.4438 0.3557 37 1 9.4387 0.5543 -1.9804 38 1 9.4376 2.3343 -1.9801 39 1 10.4965 2.3354 0.2617 40 1 10.4979 0.5555 0.2621 41 1 11.9278 0.5555 -1.7634 42 1 11.9267 2.3354 -1.7643 43 1 12.9307 0.6650 0.4473 44 1 14.3532 0.5557 -1.5197 45 1 14.3531 2.3357 -1.5207 46 1 16.8838 1.4468 -1.2627 47 1 20.2176 1.4456 -1.4248 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169893097.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:18 Heat of formation + Delta-G solvation = -29.564895 kcal Electronic energy + Delta-G solvation = -26777.400967 eV Core-core repulsion = 22576.927813 eV Total energy + Delta-G solvation = -4200.473154 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.55457 -39.97730 -38.32013 -36.64595 -36.31811 -34.99039 -34.39362 -33.84105 -32.28416 -31.44336 -31.08897 -27.63468 -27.43718 -25.61581 -24.32215 -23.35776 -22.93514 -22.22034 -21.77590 -20.32349 -19.21691 -18.27518 -18.08336 -17.87080 -17.20832 -16.53941 -16.23761 -15.89222 -15.76003 -15.41646 -15.08407 -14.64090 -14.42121 -14.35034 -14.19249 -14.07105 -13.90647 -13.51152 -13.41963 -13.05672 -12.94647 -12.28083 -12.10782 -12.03032 -11.98583 -11.87216 -11.82662 -11.48010 -11.44492 -11.35180 -11.10268 -10.97608 -10.90989 -10.66723 -10.38986 -10.21531 -9.94620 -9.50764 -9.50291 -8.47484 -8.07912 -7.95838 -6.41489 -3.82369 0.65109 1.18080 2.38177 2.56748 2.75996 3.18171 3.26860 3.32984 3.49847 3.90620 3.91643 4.08100 4.28174 4.28821 4.30990 4.47742 4.55199 4.70434 4.77347 4.88058 4.96578 5.00126 5.01191 5.05906 5.12373 5.16304 5.25776 5.35213 5.38585 5.44327 5.47364 5.49786 5.58380 5.63693 5.78002 5.88159 5.97276 5.98488 6.06379 6.26806 6.96283 7.18333 7.51198 7.55490 7.63470 7.69100 8.06556 8.61517 9.18075 9.54505 10.05943 10.76291 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.042720 B = 0.001204 C = 0.001180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.275239 B =23246.112083 C =23714.492645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.040 4.040 4 C -0.029 4.029 5 C -0.181 4.181 6 C -0.025 4.025 7 C 0.598 3.402 8 O -0.522 6.522 9 N -0.712 5.712 10 C 0.120 3.880 11 C -0.130 4.130 12 C 0.063 3.937 13 N -0.669 5.669 14 C 0.051 3.949 15 C 0.440 3.560 16 O -0.584 6.584 17 N -0.563 5.563 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.283 1.283 25 H -0.269 1.269 26 N -0.331 5.331 27 O 0.124 5.876 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.181 0.819 36 H 0.409 0.591 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.030 0.970 42 H 0.075 0.925 43 H 0.349 0.651 44 H 0.044 0.956 45 H 0.087 0.913 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.684 -1.598 -2.289 36.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.078 4.078 4 C -0.092 4.092 5 C -0.204 4.204 6 C -0.184 4.184 7 C 0.381 3.619 8 O -0.396 6.396 9 N -0.364 5.364 10 C -0.003 4.003 11 C -0.169 4.169 12 C -0.067 4.067 13 N -0.302 5.302 14 C -0.082 4.082 15 C 0.226 3.774 16 O -0.468 6.468 17 N -0.200 5.200 18 C -0.430 4.430 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 N -0.031 5.031 27 O 0.048 5.952 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.119 0.881 35 H 0.198 0.802 36 H 0.244 0.756 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.048 0.952 42 H 0.093 0.907 43 H 0.168 0.832 44 H 0.062 0.938 45 H 0.105 0.895 46 H 0.226 0.774 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -35.698 -0.908 -1.404 35.737 hybrid contribution 0.706 -0.894 -0.715 1.345 sum -34.991 -1.802 -2.119 35.102 Atomic orbital electron populations 1.21768 0.94671 1.02367 1.02232 1.21575 0.96544 0.94806 1.03262 1.20302 0.83028 0.99249 1.05238 1.24534 0.96291 1.02996 0.85353 1.22443 0.89592 1.06739 1.01595 1.23498 0.96790 1.07902 0.90216 1.16857 0.81614 0.77038 0.86347 1.90818 1.86766 1.49573 1.12453 1.45877 1.05427 1.73951 1.11116 1.21447 0.81126 1.03031 0.94737 1.21757 0.92859 1.03933 0.98311 1.21817 0.89708 1.00890 0.94291 1.60048 1.00197 1.51359 1.18584 1.21674 0.89410 1.01302 0.95827 1.19814 0.83690 0.84501 0.89436 1.90522 1.83669 1.55443 1.17179 1.41863 1.04126 1.64328 1.09677 1.19715 0.84476 1.47629 0.91167 0.87914 1.25259 0.98624 0.97283 0.96715 1.69612 1.20816 1.50586 1.13309 0.85857 0.79896 0.78373 0.80167 1.20425 1.20899 1.19380 1.74194 0.97384 1.16023 1.15527 1.84784 1.11046 1.65874 1.33489 0.92290 0.92347 0.92161 0.91213 0.91190 0.88915 0.88103 0.80166 0.75608 0.90895 0.90665 0.89939 0.91092 0.95163 0.90680 0.83154 0.93793 0.89514 0.77440 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.29 9.91 37.16 0.37 0.07 16 2 C -0.12 -0.33 5.92 -26.73 -0.16 -0.49 16 3 C -0.04 -0.11 5.78 -27.88 -0.16 -0.27 16 4 C -0.03 -0.17 6.73 -35.35 -0.24 -0.41 16 5 C -0.18 -1.39 10.92 -39.07 -0.43 -1.82 16 6 C -0.02 -0.25 7.19 -82.52 -0.59 -0.84 16 7 C 0.60 6.88 7.85 -12.10 -0.09 6.79 16 8 O -0.52 -7.39 16.95 5.37 0.09 -7.30 16 9 N -0.71 -6.98 5.55 -61.10 -0.34 -7.32 16 10 C 0.12 1.14 5.67 -4.05 -0.02 1.12 16 11 C -0.13 -1.28 5.59 -26.73 -0.15 -1.43 16 12 C 0.06 0.74 5.69 -3.82 -0.02 0.72 16 13 N -0.67 -10.71 6.13 -115.06 -0.70 -11.42 16 14 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 15 C 0.44 10.50 7.82 -10.98 -0.09 10.42 16 16 O -0.58 -16.02 15.78 5.54 0.09 -15.94 16 17 N -0.56 -14.41 5.29 -10.96 -0.06 -14.47 16 18 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 19 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 20 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 21 N -0.90 -24.68 13.05 55.50 0.72 -23.96 16 22 Si 0.93 21.16 29.55 -169.99 -5.02 16.14 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 N -0.33 -3.24 11.84 33.29 0.39 -2.85 16 27 O 0.12 1.01 11.18 17.26 0.19 1.20 16 28 H 0.06 0.09 8.14 -51.93 -0.42 -0.33 16 29 H 0.06 0.09 8.14 -51.93 -0.42 -0.33 16 30 H 0.06 0.13 8.14 -51.93 -0.42 -0.30 16 31 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 34 H 0.10 0.13 8.14 -51.93 -0.42 -0.29 16 35 H 0.18 1.11 8.06 -52.49 -0.42 0.68 16 36 H 0.41 3.51 8.23 -40.82 -0.34 3.17 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.35 5.73 8.43 -39.29 -0.33 5.40 16 44 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 46 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 47 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 407.26 15.07 6.14 6.14 Total: -1.00 -34.16 407.26 -7.62 -41.78 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -7.26 Total: 11.35 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: -1.86 Total: 6.64 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: 0.02 Total: -60.01 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: 0.37 Total: -22.04 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.16 -7.62 -41.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169893097.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.213 kcal (2) G-P(sol) polarization free energy of solvation -34.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds