Wall clock time and date at job start Tue Mar 31 2020 20:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47138 * 2 1 4 4 C 1.50700 * 109.47152 * 179.97438 * 3 2 1 5 5 C 1.35320 * 126.66312 * 90.26168 * 4 3 2 6 6 C 1.42274 * 103.91678 * 180.11044 * 5 4 3 7 7 C 1.48336 * 126.93448 * 179.91290 * 6 5 4 8 8 O 1.21494 * 119.99933 * 359.70492 * 7 6 5 9 9 N 1.34777 * 119.99811 * 179.71121 * 7 6 5 10 10 C 1.46496 * 119.99613 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.46846 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47294 * 179.97438 * 11 10 9 13 13 N 1.46894 * 109.47127 * 180.02562 * 12 11 10 14 14 C 1.46901 * 110.99811 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47185 * 180.02562 * 14 13 12 16 16 O 1.21299 * 120.00108 * 359.97438 * 15 14 13 17 17 N 1.34781 * 120.00125 * 180.02562 * 15 14 13 18 18 C 1.37101 * 119.99811 * 180.02562 * 17 15 14 19 19 H 1.07996 * 120.00073 * 359.97438 * 18 17 15 20 20 C 1.38954 * 119.99517 * 179.97438 * 18 17 15 21 21 N 1.31411 * 120.00379 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99754 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46942 * 90.00134 * 22 20 18 24 24 H 1.48499 * 109.47560 * 209.99858 * 22 20 18 25 25 H 1.48501 * 109.47285 * 330.00295 * 22 20 18 26 26 N 1.30981 * 106.12641 * 359.64730 * 6 5 4 27 27 O 1.20910 * 111.43698 * 0.22425 * 26 6 5 28 28 H 1.09003 * 109.47293 * 300.00338 * 1 2 3 29 29 H 1.09007 * 109.46799 * 60.00321 * 1 2 3 30 30 H 1.08998 * 109.47452 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47386 * 240.00143 * 2 1 3 32 32 H 1.08997 * 109.47176 * 120.00060 * 2 1 3 33 33 H 1.08998 * 109.46865 * 59.99824 * 3 2 1 34 34 H 1.08997 * 109.47136 * 300.00084 * 3 2 1 35 35 H 1.08002 * 128.04189 * 0.02562 * 5 4 3 36 36 H 0.96996 * 119.99871 * 359.97438 * 9 7 6 37 37 H 1.09002 * 109.47226 * 299.99334 * 10 9 7 38 38 H 1.08999 * 109.47406 * 59.99933 * 10 9 7 39 39 H 1.08995 * 109.47938 * 299.99929 * 11 10 9 40 40 H 1.09004 * 109.47171 * 59.99908 * 11 10 9 41 41 H 1.09002 * 109.47200 * 300.00133 * 12 11 10 42 42 H 1.08996 * 109.47037 * 59.99695 * 12 11 10 43 43 H 1.00898 * 111.00657 * 56.04978 * 13 12 11 44 44 H 1.08995 * 109.47240 * 299.99735 * 14 13 12 45 45 H 1.09007 * 109.47195 * 60.00089 * 14 13 12 46 46 H 0.97000 * 119.99849 * 0.02562 * 17 15 14 47 47 H 0.96997 * 119.99886 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3555 1.4473 -1.0845 6 6 5.6673 1.4423 -0.5339 7 6 6.9481 1.4426 -1.2821 8 8 6.9418 1.4423 -2.4971 9 7 8.1187 1.4433 -0.6143 10 6 9.3836 1.4442 -1.3533 11 6 10.5516 1.4454 -0.3651 12 6 11.8728 1.4457 -1.1369 13 7 12.9941 1.4463 -0.1880 14 6 14.2819 1.4460 -0.8950 15 6 15.4059 1.4459 0.1088 16 8 15.1587 1.4465 1.2963 17 7 16.6861 1.4462 -0.3130 18 6 17.7087 1.4456 0.6002 19 1 17.4885 1.4453 1.6574 20 6 19.0284 1.4453 0.1653 21 7 19.2963 1.4462 -1.1212 22 14 20.4217 1.4452 1.4094 23 1 20.7907 0.0451 1.7392 24 1 21.5987 2.1450 0.8347 25 1 19.9835 2.1454 2.6435 26 7 5.5158 1.4430 0.7672 27 8 4.3468 1.4432 1.0759 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 4.0710 1.4523 -2.1264 36 1 8.1237 1.4438 0.3557 37 1 9.4387 0.5543 -1.9804 38 1 9.4376 2.3343 -1.9801 39 1 10.4965 2.3354 0.2617 40 1 10.4979 0.5555 0.2621 41 1 11.9278 0.5555 -1.7634 42 1 11.9267 2.3354 -1.7643 43 1 12.9307 0.6650 0.4473 44 1 14.3532 0.5557 -1.5197 45 1 14.3531 2.3357 -1.5207 46 1 16.8838 1.4468 -1.2627 47 1 20.2176 1.4456 -1.4248 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169893097.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:17 Heat of formation + Delta-G solvation = -55.319030 kcal Electronic energy + Delta-G solvation = -26778.517750 eV Core-core repulsion = 22576.927813 eV Total energy + Delta-G solvation = -4201.589937 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.20753 -40.86041 -40.16418 -37.73341 -36.63075 -36.20124 -35.73175 -35.06017 -33.30921 -32.82152 -32.24240 -28.77942 -27.95282 -26.94787 -25.68621 -24.22577 -23.73669 -22.66595 -22.55278 -21.20424 -20.94156 -19.91171 -18.92525 -18.67497 -18.02203 -17.81955 -17.29996 -17.07234 -16.68498 -16.41577 -16.01518 -16.00019 -15.67320 -15.57048 -15.11715 -15.07305 -14.65979 -14.58974 -14.34389 -14.15165 -13.58559 -13.41797 -13.35499 -13.22390 -12.88476 -12.79429 -12.54201 -12.49423 -12.46633 -12.42282 -12.17090 -12.12330 -11.92436 -11.64577 -11.59811 -11.51802 -11.51490 -10.47737 -10.36987 -10.33881 -10.02684 -9.35115 -8.47623 -5.96636 -0.04459 0.59735 1.37632 1.41601 1.54459 1.69278 1.93602 1.97539 2.03966 2.28844 2.77672 2.93406 3.19744 3.41145 3.49663 3.85771 3.93274 3.99690 4.06837 4.09245 4.12069 4.16822 4.27376 4.32289 4.46948 4.51975 4.56784 4.61913 4.63512 4.73349 4.79785 4.81268 4.91377 4.98159 5.03421 5.11918 5.23420 5.29147 5.32161 5.40059 5.49318 5.86969 6.08448 6.15380 6.38823 6.59037 6.78714 6.95635 7.11490 7.54988 8.10230 8.69825 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.042720 B = 0.001204 C = 0.001180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.275239 B =23246.112083 C =23714.492645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.038 4.038 4 C -0.010 4.010 5 C -0.193 4.193 6 C -0.046 4.046 7 C 0.596 3.404 8 O -0.555 6.555 9 N -0.705 5.705 10 C 0.125 3.875 11 C -0.118 4.118 12 C 0.064 3.936 13 N -0.685 5.685 14 C 0.064 3.936 15 C 0.436 3.564 16 O -0.624 6.624 17 N -0.572 5.572 18 C -0.337 4.337 19 H 0.079 0.921 20 C -0.011 4.011 21 N -0.920 5.920 22 Si 0.993 3.007 23 H -0.270 1.270 24 H -0.270 1.270 25 H -0.273 1.273 26 N -0.347 5.347 27 O 0.124 5.876 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.108 0.892 34 H 0.121 0.879 35 H 0.193 0.807 36 H 0.415 0.585 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.045 0.955 42 H 0.082 0.918 43 H 0.345 0.655 44 H 0.068 0.932 45 H 0.105 0.895 46 H 0.397 0.603 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.965 -1.548 -2.645 38.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.075 4.075 4 C -0.073 4.073 5 C -0.216 4.216 6 C -0.204 4.204 7 C 0.381 3.619 8 O -0.432 6.432 9 N -0.356 5.356 10 C 0.002 3.998 11 C -0.156 4.156 12 C -0.065 4.065 13 N -0.317 5.317 14 C -0.068 4.068 15 C 0.224 3.776 16 O -0.511 6.511 17 N -0.210 5.210 18 C -0.466 4.466 19 H 0.097 0.903 20 C -0.211 4.211 21 N -0.561 5.561 22 Si 0.816 3.184 23 H -0.196 1.196 24 H -0.195 1.195 25 H -0.198 1.198 26 N -0.047 5.047 27 O 0.047 5.953 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.127 0.873 34 H 0.139 0.861 35 H 0.210 0.790 36 H 0.251 0.749 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.063 0.937 42 H 0.100 0.900 43 H 0.163 0.837 44 H 0.086 0.914 45 H 0.123 0.877 46 H 0.231 0.769 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -36.979 -0.860 -1.772 37.032 hybrid contribution 0.996 -0.916 -0.588 1.475 sum -35.984 -1.775 -2.359 36.105 Atomic orbital electron populations 1.21756 0.93860 1.02409 1.02851 1.21551 0.97163 0.94631 1.02701 1.20527 0.80400 0.99592 1.07021 1.25097 0.97404 1.00704 0.84130 1.22676 0.88865 1.07401 1.02675 1.23499 0.97028 1.09237 0.90638 1.17070 0.82345 0.76444 0.86087 1.90788 1.87307 1.51351 1.13716 1.45863 1.05241 1.73087 1.11451 1.21379 0.80838 1.03044 0.94530 1.21604 0.91989 1.03960 0.98032 1.21889 0.88798 1.01922 0.93886 1.60046 1.00505 1.51493 1.19685 1.21539 0.87837 1.03237 0.94183 1.20911 0.84411 0.82233 0.90091 1.90489 1.84391 1.56733 1.19488 1.41931 1.04552 1.64968 1.09502 1.19688 0.86082 1.50101 0.90751 0.90328 1.26034 1.00278 0.96148 0.98637 1.69670 1.21733 1.50234 1.14474 0.84933 0.77041 0.78692 0.77712 1.19556 1.19480 1.19783 1.74187 0.98300 1.16771 1.15450 1.84754 1.10833 1.65450 1.34220 0.91736 0.91668 0.92458 0.91720 0.91919 0.87325 0.86114 0.78994 0.74903 0.90781 0.90781 0.90433 0.90596 0.93688 0.89954 0.83651 0.91398 0.87713 0.76933 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.31 9.91 71.98 0.71 0.40 16 2 C -0.12 -0.47 5.92 30.59 0.18 -0.29 16 3 C -0.04 -0.11 5.78 29.85 0.17 0.06 16 4 C -0.01 -0.11 6.73 25.01 0.17 0.06 16 5 C -0.19 -2.83 10.92 22.60 0.25 -2.58 16 6 C -0.05 -0.92 7.19 42.96 0.31 -0.61 16 7 C 0.60 13.74 7.85 86.93 0.68 14.42 16 8 O -0.55 -15.81 16.95 -3.70 -0.06 -15.87 16 9 N -0.70 -13.54 5.55 -465.51 -2.59 -16.13 16 10 C 0.13 2.27 5.67 86.38 0.49 2.76 16 11 C -0.12 -2.15 5.59 30.60 0.17 -1.98 16 12 C 0.06 1.39 5.69 86.31 0.49 1.88 16 13 N -0.68 -21.09 6.13 -517.93 -3.17 -24.26 16 14 C 0.06 2.20 6.17 85.56 0.53 2.72 16 15 C 0.44 20.92 7.82 87.66 0.69 21.60 16 16 O -0.62 -34.96 15.78 -3.09 -0.05 -35.00 16 17 N -0.57 -29.62 5.29 -306.97 -1.62 -31.24 16 18 C -0.34 -19.31 9.68 84.04 0.81 -18.50 16 19 H 0.08 4.81 7.16 -2.91 -0.02 4.78 16 20 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 21 N -0.92 -49.88 13.05 21.66 0.28 -49.60 16 22 Si 0.99 43.11 29.55 68.60 2.03 45.13 16 23 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 24 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 25 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 26 N -0.35 -6.69 11.84 -49.51 -0.59 -7.28 16 27 O 0.12 1.91 11.18 71.95 0.80 2.71 16 28 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 29 H 0.06 0.06 8.14 -2.38 -0.02 0.04 16 30 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 34 H 0.12 -0.04 8.14 -2.39 -0.02 -0.06 16 35 H 0.19 2.20 8.06 -2.91 -0.02 2.18 16 36 H 0.41 6.96 8.23 -92.71 -0.76 6.20 16 37 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.34 11.08 8.43 -89.70 -0.76 10.33 16 44 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.10 3.22 8.14 -2.38 -0.02 3.20 16 46 H 0.40 19.43 7.90 -92.71 -0.73 18.70 16 47 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -74.31 407.26 -0.08 -74.39 By element: Atomic # 1 Polarization: 38.57 SS G_CDS: -1.24 Total: 37.33 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: 6.12 Total: 19.81 kcal Atomic # 7 Polarization: -120.83 SS G_CDS: -7.68 Total: -128.51 kcal Atomic # 8 Polarization: -48.86 SS G_CDS: 0.69 Total: -48.16 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -74.31 -0.08 -74.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169893097.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.074 kcal (2) G-P(sol) polarization free energy of solvation -74.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds