Wall clock time and date at job start Tue Mar 31 2020 20:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.50709 * 109.47048 * 2 1 4 4 N 1.30616 * 125.42467 * 90.01913 * 3 2 1 5 5 C 1.33694 * 108.99186 * 179.97438 * 4 3 2 6 6 C 1.50698 * 126.26901 * 180.02562 * 5 4 3 7 7 C 1.36338 * 107.45333 * 0.02562 * 5 4 3 8 8 C 1.46724 * 126.63979 * 179.97438 * 7 5 4 9 9 O 1.21685 * 120.00495 * 0.02562 * 8 7 5 10 10 N 1.34777 * 119.99823 * 180.02562 * 8 7 5 11 11 C 1.46502 * 120.00055 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.46999 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.46647 * 180.02562 * 12 11 10 14 14 N 1.46902 * 109.46903 * 180.02562 * 13 12 11 15 15 C 1.46903 * 111.00032 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.46888 * 179.97438 * 15 14 13 17 17 O 1.21290 * 120.00149 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99829 * 179.97438 * 16 15 14 19 19 C 1.37092 * 120.00154 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00057 * 0.02562 * 19 18 16 21 21 C 1.38951 * 120.00004 * 180.02562 * 19 18 16 22 22 N 1.31408 * 120.00476 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99966 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47126 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47099 * 119.99901 * 23 21 19 26 26 H 1.48491 * 109.47289 * 240.00317 * 23 21 19 27 27 O 1.33664 * 125.41524 * 269.99908 * 3 2 1 28 28 H 1.09003 * 109.47799 * 300.00032 * 1 2 3 29 29 H 1.08998 * 109.47219 * 60.00598 * 1 2 3 30 30 H 1.09000 * 109.47404 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47799 * 239.99968 * 2 1 3 32 32 H 1.08998 * 109.47219 * 119.99402 * 2 1 3 33 33 H 1.09001 * 109.47281 * 89.98056 * 6 5 4 34 34 H 1.08995 * 109.47025 * 209.97560 * 6 5 4 35 35 H 1.08998 * 109.47247 * 329.97933 * 6 5 4 36 36 H 0.96998 * 120.00230 * 0.02562 * 10 8 7 37 37 H 1.09000 * 109.46926 * 300.00331 * 11 10 8 38 38 H 1.09002 * 109.46945 * 60.00441 * 11 10 8 39 39 H 1.08997 * 109.46976 * 299.99901 * 12 11 10 40 40 H 1.08994 * 109.47146 * 60.00097 * 12 11 10 41 41 H 1.09001 * 109.47522 * 299.99672 * 13 12 11 42 42 H 1.09002 * 109.47387 * 60.00292 * 13 12 11 43 43 H 1.00899 * 111.00405 * 56.04455 * 14 13 12 44 44 H 1.08996 * 109.46977 * 299.99664 * 15 14 13 45 45 H 1.08996 * 109.47400 * 59.99804 * 15 14 13 46 46 H 0.97003 * 119.99926 * 0.02562 * 18 16 15 47 47 H 0.96993 * 120.00583 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2849 2.1346 1.0644 5 6 2.7128 3.3434 0.6862 6 6 3.1133 4.4733 1.5993 7 6 2.7202 3.3666 -0.6770 8 6 3.1174 4.4912 -1.5315 9 8 3.4876 5.5359 -1.0293 10 7 3.0723 4.3671 -2.8728 11 6 3.4694 5.4898 -3.7261 12 6 3.3255 5.0893 -5.1957 13 6 3.7409 6.2616 -6.0868 14 7 3.6022 5.8773 -7.4978 15 6 3.9937 6.9808 -8.3850 16 6 3.8391 6.5500 -9.8208 17 8 3.4414 5.4338 -10.0796 18 7 4.1418 7.4055 -10.8173 19 6 4.0007 7.0139 -12.1235 20 1 3.6465 6.0200 -12.3540 21 6 4.3132 7.8957 -13.1508 22 7 4.7446 9.1048 -12.8705 23 14 4.1202 7.3622 -14.9307 24 1 3.6213 5.9643 -14.9772 25 1 3.1505 8.2563 -15.6130 26 1 5.4347 7.4422 -15.6167 27 8 2.2904 2.1512 -1.0893 28 1 -0.3635 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8932 -0.5137 0.8900 33 1 4.1786 4.4025 1.8193 34 1 2.9056 5.4257 1.1116 35 1 2.5456 4.4090 2.5276 36 1 2.7769 3.5345 -3.2732 37 1 2.8294 6.3475 -3.5192 38 1 4.5071 5.7529 -3.5208 39 1 3.9653 4.2315 -5.4028 40 1 2.2878 4.8265 -5.4007 41 1 3.1015 7.1198 -5.8798 42 1 4.7788 6.5240 -5.8817 43 1 2.6628 5.5681 -7.6978 44 1 3.3566 7.8443 -8.1937 45 1 5.0335 7.2475 -8.1960 46 1 4.4595 8.2983 -10.6103 47 1 4.9632 9.7203 -13.5876 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170196720.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:37 Heat of formation + Delta-G solvation = -66.282905 kcal Electronic energy + Delta-G solvation = -27310.195213 eV Core-core repulsion = 23108.129847 eV Total energy + Delta-G solvation = -4202.065366 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.90998 -39.94140 -38.34091 -36.72000 -35.86128 -34.93708 -34.74375 -33.86441 -31.76951 -31.24445 -31.02457 -28.44186 -27.04485 -25.54276 -24.69109 -23.34784 -22.09315 -21.98903 -21.78205 -20.83532 -19.27290 -18.52371 -17.88296 -17.47391 -16.65968 -16.38003 -16.27872 -15.90302 -15.38677 -15.25027 -14.89277 -14.62875 -14.44415 -14.33625 -14.18465 -13.68767 -13.56030 -13.53137 -13.42819 -13.21919 -12.93713 -12.69214 -12.31708 -12.12099 -11.90531 -11.87337 -11.84108 -11.49766 -11.46737 -11.42225 -11.29510 -11.12806 -10.99246 -10.53123 -10.35359 -10.23720 -9.63845 -9.53462 -9.18169 -8.49477 -8.10146 -7.97510 -6.43031 -3.83959 0.35493 1.89414 1.92784 2.66752 2.69817 3.15461 3.26119 3.33283 3.35210 3.89161 4.05342 4.19751 4.22984 4.26861 4.47998 4.48965 4.65147 4.74613 4.87880 4.98241 5.02323 5.05932 5.14241 5.17040 5.24133 5.26409 5.29535 5.36084 5.41286 5.46345 5.48314 5.55796 5.58872 5.75837 5.82773 5.91456 5.95024 5.96540 6.03637 6.24969 6.89001 7.15901 7.17402 7.54171 7.60947 7.61607 8.05129 8.59773 9.16579 9.52911 10.04155 10.74748 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023598 B = 0.001394 C = 0.001323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.249516 B =20087.865338 C =21155.490796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.031 4.031 3 C 0.226 3.774 4 N -0.488 5.488 5 C 0.085 3.915 6 C -0.082 4.082 7 C -0.124 4.124 8 C 0.610 3.390 9 O -0.513 6.513 10 N -0.716 5.716 11 C 0.120 3.880 12 C -0.130 4.130 13 C 0.063 3.937 14 N -0.670 5.670 15 C 0.051 3.949 16 C 0.440 3.560 17 O -0.584 6.584 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 O -0.188 6.188 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.407 0.593 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.030 0.970 42 H 0.075 0.925 43 H 0.349 0.651 44 H 0.044 0.956 45 H 0.087 0.913 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.780 -12.317 28.582 31.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.069 4.069 3 C 0.020 3.980 4 N -0.218 5.218 5 C -0.039 4.039 6 C -0.139 4.139 7 C -0.178 4.178 8 C 0.395 3.605 9 O -0.391 6.391 10 N -0.367 5.367 11 C -0.003 4.003 12 C -0.168 4.168 13 C -0.067 4.067 14 N -0.302 5.302 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 O -0.075 6.075 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.117 0.883 32 H 0.129 0.871 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.241 0.759 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.048 0.952 42 H 0.093 0.907 43 H 0.168 0.832 44 H 0.062 0.938 45 H 0.105 0.895 46 H 0.226 0.774 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.189 -12.685 29.106 32.171 hybrid contribution -0.622 0.800 -1.629 1.918 sum -5.811 -11.885 27.477 30.496 Atomic orbital electron populations 1.21796 0.92526 1.03445 1.03197 1.20231 0.97260 0.83655 1.05799 1.26641 0.96173 0.96608 0.78552 1.70370 1.17934 1.03605 1.29905 1.22106 0.96665 0.93882 0.91267 1.20414 1.02151 0.93858 0.97486 1.22859 1.13482 0.86296 0.95206 1.16270 0.78085 0.84523 0.81611 1.90874 1.47594 1.26765 1.73870 1.45906 1.67264 1.18190 1.05332 1.21448 1.01329 0.88462 0.89092 1.21754 1.02913 1.00181 0.91996 1.21819 1.01397 0.95188 0.88322 1.60038 1.32770 1.36163 1.01262 1.21671 1.01556 0.92210 0.92763 1.19808 0.84851 0.86617 0.86155 1.90519 1.51207 1.20986 1.84123 1.41871 1.58052 1.14572 1.05518 1.19761 1.41608 1.00680 0.80898 0.87851 1.25267 0.97021 0.95136 1.00516 1.69615 1.44940 1.05923 1.33788 0.85794 0.77872 0.78882 0.81757 1.19220 1.20773 1.20726 1.84441 1.63598 1.22054 1.37369 0.91620 0.91904 0.90442 0.88289 0.87142 0.89843 0.88558 0.90375 0.75854 0.90868 0.90620 0.89981 0.91123 0.95152 0.90670 0.83164 0.93781 0.89516 0.77437 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.53 9.89 37.15 0.37 -0.16 16 2 C -0.03 -0.13 6.56 -27.88 -0.18 -0.31 16 3 C 0.23 1.87 7.57 -12.79 -0.10 1.77 16 4 N -0.49 -4.97 11.26 -7.07 -0.08 -5.05 16 5 C 0.09 0.89 7.16 -82.47 -0.59 0.30 16 6 C -0.08 -0.70 9.87 36.00 0.36 -0.34 16 7 C -0.12 -1.29 7.18 -36.84 -0.26 -1.56 16 8 C 0.61 6.61 7.79 -12.83 -0.10 6.51 16 9 O -0.51 -6.67 14.79 5.20 0.08 -6.59 16 10 N -0.72 -6.31 5.55 -61.60 -0.34 -6.65 16 11 C 0.12 1.05 5.67 -4.04 -0.02 1.02 16 12 C -0.13 -1.18 5.59 -26.73 -0.15 -1.33 16 13 C 0.06 0.71 5.69 -3.82 -0.02 0.68 16 14 N -0.67 -10.41 6.12 -115.05 -0.70 -11.11 16 15 C 0.05 0.88 6.17 -4.97 -0.03 0.85 16 16 C 0.44 10.36 7.82 -10.98 -0.09 10.27 16 17 O -0.58 -15.82 15.78 5.55 0.09 -15.73 16 18 N -0.56 -14.27 5.29 -10.96 -0.06 -14.32 16 19 C -0.30 -8.37 9.68 -14.94 -0.14 -8.51 16 20 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.48 13.05 55.50 0.72 -23.75 16 23 Si 0.93 20.98 29.55 -169.99 -5.02 15.95 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 O -0.19 -1.73 10.57 4.42 0.05 -1.68 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.10 0.88 6.47 -51.93 -0.34 0.55 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.41 2.93 8.27 -40.82 -0.34 2.59 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.35 5.55 8.43 -39.29 -0.33 5.22 16 44 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 46 H 0.39 9.48 7.90 -40.82 -0.32 9.15 16 47 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 404.09 15.07 6.09 6.09 Total: -1.00 -34.23 404.09 -7.42 -41.66 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -7.18 Total: 11.50 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: -1.06 Total: 9.69 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: -0.46 Total: -60.89 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: 0.21 Total: -24.00 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.23 -7.42 -41.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170196720.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.625 kcal (2) G-P(sol) polarization free energy of solvation -34.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds