Wall clock time and date at job start Tue Mar 31 2020 20:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.50709 * 109.47048 * 2 1 4 4 N 1.30616 * 125.42467 * 90.01913 * 3 2 1 5 5 C 1.33694 * 108.99186 * 179.97438 * 4 3 2 6 6 C 1.50698 * 126.26901 * 180.02562 * 5 4 3 7 7 C 1.36338 * 107.45333 * 0.02562 * 5 4 3 8 8 C 1.46724 * 126.63979 * 179.97438 * 7 5 4 9 9 O 1.21685 * 120.00495 * 0.02562 * 8 7 5 10 10 N 1.34777 * 119.99823 * 180.02562 * 8 7 5 11 11 C 1.46502 * 120.00055 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.46999 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.46647 * 180.02562 * 12 11 10 14 14 N 1.46902 * 109.46903 * 180.02562 * 13 12 11 15 15 C 1.46903 * 111.00032 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.46888 * 179.97438 * 15 14 13 17 17 O 1.21290 * 120.00149 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99829 * 179.97438 * 16 15 14 19 19 C 1.37092 * 120.00154 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00057 * 0.02562 * 19 18 16 21 21 C 1.38951 * 120.00004 * 180.02562 * 19 18 16 22 22 N 1.31408 * 120.00476 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99966 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47126 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47099 * 119.99901 * 23 21 19 26 26 H 1.48491 * 109.47289 * 240.00317 * 23 21 19 27 27 O 1.33664 * 125.41524 * 269.99908 * 3 2 1 28 28 H 1.09003 * 109.47799 * 300.00032 * 1 2 3 29 29 H 1.08998 * 109.47219 * 60.00598 * 1 2 3 30 30 H 1.09000 * 109.47404 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47799 * 239.99968 * 2 1 3 32 32 H 1.08998 * 109.47219 * 119.99402 * 2 1 3 33 33 H 1.09001 * 109.47281 * 89.98056 * 6 5 4 34 34 H 1.08995 * 109.47025 * 209.97560 * 6 5 4 35 35 H 1.08998 * 109.47247 * 329.97933 * 6 5 4 36 36 H 0.96998 * 120.00230 * 0.02562 * 10 8 7 37 37 H 1.09000 * 109.46926 * 300.00331 * 11 10 8 38 38 H 1.09002 * 109.46945 * 60.00441 * 11 10 8 39 39 H 1.08997 * 109.46976 * 299.99901 * 12 11 10 40 40 H 1.08994 * 109.47146 * 60.00097 * 12 11 10 41 41 H 1.09001 * 109.47522 * 299.99672 * 13 12 11 42 42 H 1.09002 * 109.47387 * 60.00292 * 13 12 11 43 43 H 1.00899 * 111.00405 * 56.04455 * 14 13 12 44 44 H 1.08996 * 109.46977 * 299.99664 * 15 14 13 45 45 H 1.08996 * 109.47400 * 59.99804 * 15 14 13 46 46 H 0.97003 * 119.99926 * 0.02562 * 18 16 15 47 47 H 0.96993 * 120.00583 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2849 2.1346 1.0644 5 6 2.7128 3.3434 0.6862 6 6 3.1133 4.4733 1.5993 7 6 2.7202 3.3666 -0.6770 8 6 3.1174 4.4912 -1.5315 9 8 3.4876 5.5359 -1.0293 10 7 3.0723 4.3671 -2.8728 11 6 3.4694 5.4898 -3.7261 12 6 3.3255 5.0893 -5.1957 13 6 3.7409 6.2616 -6.0868 14 7 3.6022 5.8773 -7.4978 15 6 3.9937 6.9808 -8.3850 16 6 3.8391 6.5500 -9.8208 17 8 3.4414 5.4338 -10.0796 18 7 4.1418 7.4055 -10.8173 19 6 4.0007 7.0139 -12.1235 20 1 3.6465 6.0200 -12.3540 21 6 4.3132 7.8957 -13.1508 22 7 4.7446 9.1048 -12.8705 23 14 4.1202 7.3622 -14.9307 24 1 3.6213 5.9643 -14.9772 25 1 3.1505 8.2563 -15.6130 26 1 5.4347 7.4422 -15.6167 27 8 2.2904 2.1512 -1.0893 28 1 -0.3635 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8932 -0.5137 0.8900 33 1 4.1786 4.4025 1.8193 34 1 2.9056 5.4257 1.1116 35 1 2.5456 4.4090 2.5276 36 1 2.7769 3.5345 -3.2732 37 1 2.8294 6.3475 -3.5192 38 1 4.5071 5.7529 -3.5208 39 1 3.9653 4.2315 -5.4028 40 1 2.2878 4.8265 -5.4007 41 1 3.1015 7.1198 -5.8798 42 1 4.7788 6.5240 -5.8817 43 1 2.6628 5.5681 -7.6978 44 1 3.3566 7.8443 -8.1937 45 1 5.0335 7.2475 -8.1960 46 1 4.4595 8.2983 -10.6103 47 1 4.9632 9.7203 -13.5876 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170196720.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:36 Heat of formation + Delta-G solvation = -94.909902 kcal Electronic energy + Delta-G solvation = -27311.436573 eV Core-core repulsion = 23108.129847 eV Total energy + Delta-G solvation = -4203.306726 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.60298 -40.75965 -40.15473 -37.73283 -36.65197 -36.08437 -35.64483 -35.20460 -33.30268 -32.60870 -31.75898 -29.31582 -28.28978 -26.60688 -25.78105 -24.51884 -22.87466 -22.64285 -22.51631 -21.58648 -21.06351 -19.91844 -19.28358 -18.17878 -17.88553 -17.28628 -17.18343 -16.99206 -16.61373 -16.35528 -15.99550 -15.76729 -15.56512 -15.45869 -15.07643 -14.93444 -14.68718 -14.37447 -14.27374 -14.17518 -13.64336 -13.57055 -13.38557 -13.31877 -13.18671 -12.86935 -12.73588 -12.64796 -12.46072 -12.40244 -12.22042 -12.11043 -12.08640 -11.97479 -11.88404 -11.51577 -11.35277 -10.41885 -10.35775 -10.01906 -9.89084 -9.33387 -8.47077 -5.95989 -0.37378 1.21456 1.22584 1.36864 1.42320 1.56476 1.86793 1.97483 2.04813 2.29468 2.77134 2.93936 3.20332 3.51442 3.54856 3.56476 3.97629 4.07040 4.11128 4.13332 4.18173 4.21893 4.33674 4.37279 4.48578 4.55300 4.56294 4.58944 4.63539 4.66959 4.74820 4.76654 4.91256 4.94807 5.00356 5.06419 5.15454 5.21561 5.28042 5.31707 5.40987 5.88246 6.09694 6.16367 6.40979 6.47247 6.59660 6.84735 7.12288 7.55907 8.10983 8.70495 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023598 B = 0.001394 C = 0.001323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.249516 B =20087.865338 C =21155.490796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.032 4.032 3 C 0.233 3.767 4 N -0.512 5.512 5 C 0.075 3.925 6 C -0.079 4.079 7 C -0.142 4.142 8 C 0.609 3.391 9 O -0.541 6.541 10 N -0.707 5.707 11 C 0.126 3.874 12 C -0.117 4.117 13 C 0.063 3.937 14 N -0.685 5.685 15 C 0.065 3.935 16 C 0.437 3.563 17 O -0.624 6.624 18 N -0.573 5.573 19 C -0.335 4.335 20 H 0.079 0.921 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.994 3.006 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.271 1.271 27 O -0.189 6.189 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.415 0.585 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.044 0.956 42 H 0.081 0.919 43 H 0.345 0.655 44 H 0.068 0.932 45 H 0.104 0.896 46 H 0.397 0.603 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.986 -12.922 28.960 32.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.069 4.069 3 C 0.028 3.972 4 N -0.242 5.242 5 C -0.049 4.049 6 C -0.136 4.136 7 C -0.197 4.197 8 C 0.395 3.605 9 O -0.421 6.421 10 N -0.357 5.357 11 C 0.003 3.997 12 C -0.155 4.155 13 C -0.066 4.066 14 N -0.317 5.317 15 C -0.068 4.068 16 C 0.224 3.776 17 O -0.510 6.510 18 N -0.211 5.211 19 C -0.465 4.465 20 H 0.097 0.903 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.817 3.183 24 H -0.198 1.198 25 H -0.196 1.196 26 H -0.196 1.196 27 O -0.076 6.076 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.118 0.882 31 H 0.138 0.862 32 H 0.143 0.857 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.251 0.749 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.062 0.938 42 H 0.100 0.900 43 H 0.164 0.836 44 H 0.086 0.914 45 H 0.122 0.878 46 H 0.231 0.769 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.390 -13.279 29.499 32.796 hybrid contribution -0.587 0.910 -1.675 1.995 sum -5.977 -12.369 27.823 31.030 Atomic orbital electron populations 1.21790 0.91939 1.04625 1.02286 1.20554 0.97551 0.81285 1.07535 1.27602 0.94157 0.97544 0.77898 1.70400 1.19192 1.03835 1.30809 1.22458 0.96334 0.94447 0.91706 1.20422 1.02713 0.92909 0.97563 1.22775 1.14844 0.86828 0.95236 1.16331 0.77810 0.84309 0.82051 1.90852 1.49033 1.27778 1.74423 1.45833 1.66532 1.18590 1.04777 1.21368 1.01266 0.88383 0.88681 1.21600 1.03156 0.99190 0.91602 1.21900 1.02239 0.96435 0.86005 1.60037 1.32645 1.35911 1.03147 1.21534 1.03220 0.93318 0.88713 1.20913 0.82695 0.85669 0.88312 1.90485 1.52503 1.22719 1.85339 1.41944 1.58728 1.15072 1.05307 1.19721 1.43668 1.00324 0.82766 0.90286 1.26043 0.96070 0.95015 1.04104 1.69672 1.44759 1.06469 1.35208 0.84860 0.78303 0.78226 0.76873 1.19777 1.19585 1.19639 1.84441 1.63744 1.21748 1.37704 0.92771 0.92565 0.88205 0.86164 0.85732 0.89177 0.89429 0.89244 0.74873 0.90790 0.90781 0.90344 0.90491 0.93759 0.90028 0.83623 0.91434 0.87764 0.76945 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.89 71.98 0.71 -0.07 16 2 C -0.03 -0.19 6.56 29.85 0.20 0.00 16 3 C 0.23 3.62 7.57 88.29 0.67 4.29 16 4 N -0.51 -10.19 11.26 -291.06 -3.28 -13.46 16 5 C 0.07 1.56 7.16 41.83 0.30 1.86 16 6 C -0.08 -1.35 9.87 71.24 0.70 -0.65 16 7 C -0.14 -2.95 7.18 24.05 0.17 -2.77 16 8 C 0.61 13.07 7.79 86.46 0.67 13.74 16 9 O -0.54 -14.12 14.79 -4.30 -0.06 -14.18 16 10 N -0.71 -11.81 5.55 -467.03 -2.59 -14.41 16 11 C 0.13 2.03 5.67 86.38 0.49 2.52 16 12 C -0.12 -1.92 5.59 30.60 0.17 -1.75 16 13 C 0.06 1.29 5.69 86.30 0.49 1.78 16 14 N -0.68 -20.29 6.12 -517.92 -3.17 -23.47 16 15 C 0.06 2.14 6.17 85.56 0.53 2.67 16 16 C 0.44 20.60 7.82 87.66 0.69 21.28 16 17 O -0.62 -34.36 15.78 -3.06 -0.05 -34.41 16 18 N -0.57 -29.31 5.29 -306.99 -1.62 -30.94 16 19 C -0.34 -19.04 9.68 84.04 0.81 -18.22 16 20 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 21 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 22 N -0.92 -49.49 13.05 21.66 0.28 -49.20 16 23 Si 0.99 42.75 29.55 68.60 2.03 44.78 16 24 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 26 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 27 O -0.19 -3.34 10.57 -7.11 -0.08 -3.42 16 28 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 31 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.09 1.65 6.47 -2.39 -0.02 1.63 16 35 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.41 5.51 8.27 -92.71 -0.77 4.75 16 37 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.35 10.65 8.43 -89.69 -0.76 9.89 16 44 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 45 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 46 H 0.40 19.21 7.90 -92.71 -0.73 18.48 16 47 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -74.41 404.09 -2.70 -77.11 By element: Atomic # 1 Polarization: 38.35 SS G_CDS: -1.23 Total: 37.12 kcal Atomic # 6 Polarization: 17.41 SS G_CDS: 7.07 Total: 24.48 kcal Atomic # 7 Polarization: -121.10 SS G_CDS: -10.38 Total: -131.48 kcal Atomic # 8 Polarization: -51.82 SS G_CDS: -0.19 Total: -52.01 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -74.41 -2.70 -77.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170196720.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.795 kcal (2) G-P(sol) polarization free energy of solvation -74.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds