Wall clock time and date at job start Tue Mar 31 2020 21:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37096 * 120.00426 * 2 1 4 4 H 1.07993 * 120.00352 * 169.77324 * 3 2 1 5 5 C 1.38947 * 119.99528 * 349.77663 * 3 2 1 6 6 N 1.31418 * 120.00282 * 7.07385 * 5 3 2 7 7 Si 1.86805 * 119.99940 * 187.07120 * 5 3 2 8 8 H 1.48498 * 109.46952 * 60.00307 * 7 5 3 9 9 H 1.48503 * 109.47309 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47366 * 300.00015 * 7 5 3 11 11 C 1.34775 * 119.99969 * 180.02562 * 2 1 3 12 12 O 1.21294 * 120.00069 * 4.61841 * 11 2 1 13 13 C 1.50703 * 120.00438 * 184.62136 * 11 2 1 14 14 H 1.09007 * 109.46896 * 317.41323 * 13 11 2 15 15 C 1.52998 * 109.47047 * 77.40499 * 13 11 2 16 16 C 1.50705 * 109.47142 * 184.77749 * 15 13 11 17 17 C 1.34663 * 126.58892 * 84.97796 * 16 15 13 18 18 N 1.34129 * 108.02156 * 180.02562 * 17 16 15 19 19 C 1.30504 * 109.25130 * 0.02562 * 18 17 16 20 20 N 1.35036 * 108.70225 * 0.02562 * 19 18 17 21 21 H 0.97003 * 126.39724 * 180.02562 * 20 19 18 22 22 N 1.46491 * 109.47425 * 197.40985 * 13 11 2 23 23 C 1.34785 * 120.00205 * 154.99677 * 22 13 11 24 24 O 1.21512 * 119.99745 * 0.02562 * 23 22 13 25 25 O 1.34629 * 119.99916 * 179.97438 * 23 22 13 26 26 C 1.45206 * 116.99449 * 179.97438 * 25 23 22 27 27 C 1.53002 * 109.47166 * 60.00709 * 26 25 23 28 28 C 1.53006 * 109.47038 * 180.02562 * 26 25 23 29 29 C 1.53001 * 109.47532 * 300.00177 * 26 25 23 30 30 H 1.09003 * 109.47148 * 184.33470 * 1 2 3 31 31 H 1.08996 * 109.47022 * 304.33603 * 1 2 3 32 32 H 1.08994 * 109.47200 * 64.33411 * 1 2 3 33 33 H 0.97002 * 119.99938 * 179.97438 * 6 5 3 34 34 H 1.09005 * 109.46983 * 64.77816 * 15 13 11 35 35 H 1.08999 * 109.47755 * 304.78070 * 15 13 11 36 36 H 1.08003 * 125.99008 * 0.02562 * 17 16 15 37 37 H 1.08002 * 125.64385 * 179.97438 * 19 18 17 38 38 H 0.96998 * 120.00525 * 334.99833 * 22 13 11 39 39 H 1.09001 * 109.47475 * 59.99269 * 27 26 25 40 40 H 1.09000 * 109.47411 * 179.97438 * 27 26 25 41 41 H 1.08998 * 109.46729 * 299.99582 * 27 26 25 42 42 H 1.08997 * 109.47121 * 59.99943 * 28 26 25 43 43 H 1.08996 * 109.47384 * 180.02562 * 28 26 25 44 44 H 1.09001 * 109.46755 * 300.00210 * 28 26 25 45 45 H 1.08998 * 109.47020 * 60.00015 * 29 26 25 46 46 H 1.08996 * 109.46946 * 180.02562 * 29 26 25 47 47 H 1.08997 * 109.46942 * 300.00249 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.2176 1.1946 0.1660 5 6 1.4723 2.3810 -0.2136 6 7 0.1597 2.3888 -0.2769 7 14 2.4264 3.9749 -0.4107 8 1 3.3368 3.8656 -1.5788 9 1 1.4774 5.0965 -0.6268 10 1 3.2235 4.2297 0.8160 11 6 2.1388 -1.1672 -0.0005 12 8 1.5353 -2.2159 -0.0856 13 6 3.6422 -1.1695 0.1046 14 1 4.0522 -0.3857 -0.5324 15 6 4.0523 -0.9133 1.5562 16 6 5.5526 -0.7989 1.6416 17 6 6.2866 0.3095 1.4266 18 7 7.5781 -0.0078 1.6011 19 6 7.6722 -1.2709 1.9155 20 7 6.4311 -1.8020 1.9507 21 1 6.2045 -2.7221 2.1577 22 7 4.1600 -2.4701 -0.3269 23 6 5.4179 -2.5714 -0.8001 24 8 6.1227 -1.5839 -0.8684 25 8 5.8939 -3.7669 -1.1962 26 6 7.2570 -3.8010 -1.6954 27 6 8.2129 -3.3198 -0.6019 28 6 7.6181 -5.2332 -2.0950 29 6 7.3763 -2.8862 -2.9159 30 1 -0.3633 -1.0247 0.0777 31 1 -0.3633 0.5796 0.8486 32 1 -0.3633 0.4451 -0.9262 33 1 -0.3137 3.2223 -0.4256 34 1 3.7149 -1.7407 2.1805 35 1 3.5968 0.0137 1.9044 36 1 5.9026 1.2832 1.1604 37 1 8.5906 -1.8034 2.1138 38 1 3.5976 -3.2585 -0.2721 39 1 8.1279 -3.9716 0.2676 40 1 9.2361 -3.3459 -0.9765 41 1 7.9555 -2.2995 -0.3177 42 1 6.9371 -5.5757 -2.8741 43 1 8.6414 -5.2590 -2.4693 44 1 7.5330 -5.8853 -1.2257 45 1 7.1189 -1.8658 -2.6317 46 1 8.3994 -2.9122 -3.2909 47 1 6.6953 -3.2290 -3.6949 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177084098.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:31 Heat of formation + Delta-G solvation = -39.600237 kcal Electronic energy + Delta-G solvation = -32000.142283 eV Core-core repulsion = 27799.233964 eV Total energy + Delta-G solvation = -4200.908319 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.70723 -40.43007 -39.00061 -37.05078 -35.12403 -34.49862 -33.94371 -32.11988 -31.71592 -31.19886 -28.23686 -27.44810 -27.36627 -26.32078 -24.87062 -23.67209 -21.72922 -21.14555 -20.27065 -19.85111 -19.26970 -18.35248 -17.43180 -17.24063 -16.31472 -15.99288 -15.87083 -15.02595 -14.84555 -14.57240 -14.21371 -14.17361 -14.09073 -13.92320 -13.68063 -13.27711 -13.07959 -12.83168 -12.81366 -12.56673 -12.27139 -12.17373 -11.86068 -11.83796 -11.65798 -11.58765 -11.43585 -11.22999 -11.14360 -10.99955 -10.73111 -10.50159 -10.44575 -10.23853 -9.73265 -9.56980 -9.55179 -9.20554 -8.97630 -8.62002 -8.06918 -7.73967 -6.43350 -4.05100 2.39014 2.48030 3.07631 3.16826 3.17601 3.20025 3.46727 3.62412 3.73716 3.97642 4.37365 4.64694 4.71076 4.73574 4.88640 4.95246 5.01812 5.27142 5.37771 5.43638 5.47921 5.57281 5.62396 5.65690 5.70885 5.78667 5.84924 5.91948 5.99019 6.07533 6.10818 6.28401 6.33166 6.35545 6.57875 6.72342 6.74202 6.86666 7.12889 7.21178 7.28252 7.36801 7.59206 7.73729 7.84706 8.21316 8.49117 8.75544 8.89919 9.31186 9.69263 10.49271 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012945 B = 0.004308 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.550870 B = 6497.506265 C = 7285.356439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.426 5.426 3 C -0.341 4.341 4 H 0.106 0.894 5 C 0.042 3.958 6 N -0.868 5.868 7 Si 0.924 3.076 8 H -0.269 1.269 9 H -0.282 1.282 10 H -0.268 1.268 11 C 0.436 3.564 12 O -0.613 6.613 13 C 0.169 3.831 14 H 0.114 0.886 15 C -0.052 4.052 16 C 0.008 3.992 17 C -0.009 4.009 18 N -0.488 5.488 19 C 0.172 3.828 20 N -0.565 5.565 21 H 0.409 0.591 22 N -0.692 5.692 23 C 0.642 3.358 24 O -0.548 6.548 25 O -0.371 6.371 26 C 0.139 3.861 27 C -0.187 4.187 28 C -0.140 4.140 29 C -0.183 4.183 30 H 0.036 0.964 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.270 0.730 34 H 0.070 0.930 35 H 0.113 0.887 36 H 0.162 0.838 37 H 0.192 0.808 38 H 0.409 0.591 39 H 0.051 0.949 40 H 0.065 0.935 41 H 0.101 0.899 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.063 0.937 45 H 0.091 0.909 46 H 0.065 0.935 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.961 -9.922 1.302 15.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.142 5.142 3 C -0.469 4.469 4 H 0.123 0.877 5 C -0.164 4.164 6 N -0.506 5.506 7 Si 0.750 3.250 8 H -0.194 1.194 9 H -0.207 1.207 10 H -0.193 1.193 11 C 0.223 3.777 12 O -0.502 6.502 13 C 0.062 3.938 14 H 0.131 0.869 15 C -0.093 4.093 16 C -0.107 4.107 17 C -0.157 4.157 18 N -0.207 5.207 19 C -0.111 4.111 20 N -0.168 5.168 21 H 0.245 0.755 22 N -0.353 5.353 23 C 0.394 3.606 24 O -0.435 6.435 25 O -0.286 6.286 26 C 0.102 3.898 27 C -0.244 4.244 28 C -0.197 4.197 29 C -0.240 4.240 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.131 0.869 36 H 0.180 0.820 37 H 0.209 0.791 38 H 0.246 0.754 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.120 0.880 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.110 0.890 46 H 0.084 0.916 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.544 -9.150 1.065 15.563 hybrid contribution -0.547 -0.460 -0.052 0.717 sum 11.997 -9.610 1.013 15.405 Atomic orbital electron populations 1.21623 0.79151 0.97716 1.03670 1.43665 1.06481 1.04481 1.59577 1.19791 0.93812 0.83208 1.50050 0.87674 1.25341 0.95701 0.99924 0.95389 1.70204 1.06391 1.27980 1.46026 0.86019 0.79149 0.80241 0.79636 1.19430 1.20728 1.19276 1.19577 0.88026 0.84349 0.85744 1.90523 1.69300 1.31412 1.58991 1.20599 0.93251 0.84346 0.95631 0.86863 1.20450 0.88026 1.04600 0.96197 1.20960 0.92679 0.89166 1.07944 1.21836 0.88558 0.98516 1.06752 1.70167 1.20659 1.12147 1.17733 1.24475 0.88205 0.91572 1.06832 1.43132 1.07617 1.11561 1.54488 0.75540 1.44575 1.11561 1.12484 1.66640 1.18072 0.83060 0.81965 0.77508 1.90970 1.57203 1.36627 1.58727 1.86287 1.32561 1.32859 1.76930 1.21938 0.77565 0.96422 0.93874 1.22636 0.98906 1.04944 0.97900 1.21849 1.01794 0.93838 1.02227 1.22499 1.02162 1.02612 0.96712 0.94538 0.91620 0.91223 0.91877 0.91154 0.86916 0.82033 0.79096 0.75404 0.92965 0.91623 0.88032 0.91611 0.90452 0.91767 0.89025 0.91589 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.85 8.86 59.85 0.53 3.38 16 2 N -0.43 -10.08 3.03 -122.20 -0.37 -10.45 16 3 C -0.34 -8.01 8.61 -14.94 -0.13 -8.13 16 4 H 0.11 2.31 5.41 -52.49 -0.28 2.03 16 5 C 0.04 1.00 5.46 -17.47 -0.10 0.90 16 6 N -0.87 -21.32 9.51 55.50 0.53 -20.79 16 7 Si 0.92 18.79 29.56 -169.99 -5.02 13.76 16 8 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 9 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 10 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 11 C 0.44 9.69 6.90 -10.98 -0.08 9.62 16 12 O -0.61 -14.78 15.24 5.55 0.08 -14.69 16 13 C 0.17 3.15 1.80 -69.09 -0.12 3.03 16 14 H 0.11 2.34 6.30 -51.93 -0.33 2.01 16 15 C -0.05 -0.86 5.17 -27.88 -0.14 -1.00 16 16 C 0.01 0.12 4.21 -81.60 -0.34 -0.22 16 17 C -0.01 -0.16 11.24 -17.81 -0.20 -0.36 16 18 N -0.49 -8.24 11.25 -14.67 -0.17 -8.40 16 19 C 0.17 2.31 11.11 -90.38 -1.00 1.31 16 20 N -0.56 -7.35 5.11 -10.30 -0.05 -7.40 16 21 H 0.41 4.44 8.96 -40.82 -0.37 4.08 16 22 N -0.69 -11.78 5.00 -59.87 -0.30 -12.08 16 23 C 0.64 10.52 6.85 54.06 0.37 10.89 16 24 O -0.55 -9.72 8.81 -19.28 -0.17 -9.89 16 25 O -0.37 -5.44 9.94 -40.29 -0.40 -5.84 16 26 C 0.14 1.68 1.13 -90.62 -0.10 1.58 16 27 C -0.19 -2.11 8.30 37.16 0.31 -1.80 16 28 C -0.14 -1.28 8.85 37.16 0.33 -0.95 16 29 C -0.18 -2.31 8.37 37.16 0.31 -2.00 16 30 H 0.04 0.84 6.93 -51.93 -0.36 0.48 16 31 H 0.07 1.57 7.22 -51.93 -0.37 1.19 16 32 H 0.07 1.72 6.91 -51.93 -0.36 1.36 16 33 H 0.27 6.35 8.31 -40.82 -0.34 6.01 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.11 1.94 6.95 -51.93 -0.36 1.58 16 36 H 0.16 2.79 8.06 -52.48 -0.42 2.36 16 37 H 0.19 1.88 8.06 -52.49 -0.42 1.45 16 38 H 0.41 6.96 7.83 -40.82 -0.32 6.64 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.10 1.42 3.98 -51.93 -0.21 1.21 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.09 1.44 5.88 -51.93 -0.31 1.13 16 46 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 371.60 15.07 5.60 5.60 Total: -1.00 -28.59 371.60 -7.27 -35.86 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: -6.63 Total: 18.09 kcal Atomic # 6 Polarization: 16.60 SS G_CDS: -0.37 Total: 16.23 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: -0.36 Total: -59.12 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -0.49 Total: -30.42 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.02 Total: 13.76 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.59 -7.27 -35.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177084098.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.741 kcal (2) G-P(sol) polarization free energy of solvation -28.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds