Wall clock time and date at job start Tue Mar 31 2020 21:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37096 * 120.00426 * 2 1 4 4 H 1.07993 * 120.00352 * 169.77324 * 3 2 1 5 5 C 1.38947 * 119.99528 * 349.77663 * 3 2 1 6 6 N 1.31418 * 120.00282 * 7.07385 * 5 3 2 7 7 Si 1.86805 * 119.99940 * 187.07120 * 5 3 2 8 8 H 1.48498 * 109.46952 * 60.00307 * 7 5 3 9 9 H 1.48503 * 109.47309 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47366 * 300.00015 * 7 5 3 11 11 C 1.34775 * 119.99969 * 180.02562 * 2 1 3 12 12 O 1.21294 * 120.00069 * 4.61841 * 11 2 1 13 13 C 1.50703 * 120.00438 * 184.62136 * 11 2 1 14 14 H 1.09007 * 109.46896 * 317.41323 * 13 11 2 15 15 C 1.52998 * 109.47047 * 77.40499 * 13 11 2 16 16 C 1.50705 * 109.47142 * 184.77749 * 15 13 11 17 17 C 1.34663 * 126.58892 * 84.97796 * 16 15 13 18 18 N 1.34129 * 108.02156 * 180.02562 * 17 16 15 19 19 C 1.30504 * 109.25130 * 0.02562 * 18 17 16 20 20 N 1.35036 * 108.70225 * 0.02562 * 19 18 17 21 21 H 0.97003 * 126.39724 * 180.02562 * 20 19 18 22 22 N 1.46491 * 109.47425 * 197.40985 * 13 11 2 23 23 C 1.34785 * 120.00205 * 154.99677 * 22 13 11 24 24 O 1.21512 * 119.99745 * 0.02562 * 23 22 13 25 25 O 1.34629 * 119.99916 * 179.97438 * 23 22 13 26 26 C 1.45206 * 116.99449 * 179.97438 * 25 23 22 27 27 C 1.53002 * 109.47166 * 60.00709 * 26 25 23 28 28 C 1.53006 * 109.47038 * 180.02562 * 26 25 23 29 29 C 1.53001 * 109.47532 * 300.00177 * 26 25 23 30 30 H 1.09003 * 109.47148 * 184.33470 * 1 2 3 31 31 H 1.08996 * 109.47022 * 304.33603 * 1 2 3 32 32 H 1.08994 * 109.47200 * 64.33411 * 1 2 3 33 33 H 0.97002 * 119.99938 * 179.97438 * 6 5 3 34 34 H 1.09005 * 109.46983 * 64.77816 * 15 13 11 35 35 H 1.08999 * 109.47755 * 304.78070 * 15 13 11 36 36 H 1.08003 * 125.99008 * 0.02562 * 17 16 15 37 37 H 1.08002 * 125.64385 * 179.97438 * 19 18 17 38 38 H 0.96998 * 120.00525 * 334.99833 * 22 13 11 39 39 H 1.09001 * 109.47475 * 59.99269 * 27 26 25 40 40 H 1.09000 * 109.47411 * 179.97438 * 27 26 25 41 41 H 1.08998 * 109.46729 * 299.99582 * 27 26 25 42 42 H 1.08997 * 109.47121 * 59.99943 * 28 26 25 43 43 H 1.08996 * 109.47384 * 180.02562 * 28 26 25 44 44 H 1.09001 * 109.46755 * 300.00210 * 28 26 25 45 45 H 1.08998 * 109.47020 * 60.00015 * 29 26 25 46 46 H 1.08996 * 109.46946 * 180.02562 * 29 26 25 47 47 H 1.08997 * 109.46942 * 300.00249 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.2176 1.1946 0.1660 5 6 1.4723 2.3810 -0.2136 6 7 0.1597 2.3888 -0.2769 7 14 2.4264 3.9749 -0.4107 8 1 3.3368 3.8656 -1.5788 9 1 1.4774 5.0965 -0.6268 10 1 3.2235 4.2297 0.8160 11 6 2.1388 -1.1672 -0.0005 12 8 1.5353 -2.2159 -0.0856 13 6 3.6422 -1.1695 0.1046 14 1 4.0522 -0.3857 -0.5324 15 6 4.0523 -0.9133 1.5562 16 6 5.5526 -0.7989 1.6416 17 6 6.2866 0.3095 1.4266 18 7 7.5781 -0.0078 1.6011 19 6 7.6722 -1.2709 1.9155 20 7 6.4311 -1.8020 1.9507 21 1 6.2045 -2.7221 2.1577 22 7 4.1600 -2.4701 -0.3269 23 6 5.4179 -2.5714 -0.8001 24 8 6.1227 -1.5839 -0.8684 25 8 5.8939 -3.7669 -1.1962 26 6 7.2570 -3.8010 -1.6954 27 6 8.2129 -3.3198 -0.6019 28 6 7.6181 -5.2332 -2.0950 29 6 7.3763 -2.8862 -2.9159 30 1 -0.3633 -1.0247 0.0777 31 1 -0.3633 0.5796 0.8486 32 1 -0.3633 0.4451 -0.9262 33 1 -0.3137 3.2223 -0.4256 34 1 3.7149 -1.7407 2.1805 35 1 3.5968 0.0137 1.9044 36 1 5.9026 1.2832 1.1604 37 1 8.5906 -1.8034 2.1138 38 1 3.5976 -3.2585 -0.2721 39 1 8.1279 -3.9716 0.2676 40 1 9.2361 -3.3459 -0.9765 41 1 7.9555 -2.2995 -0.3177 42 1 6.9371 -5.5757 -2.8741 43 1 8.6414 -5.2590 -2.4693 44 1 7.5330 -5.8853 -1.2257 45 1 7.1189 -1.8658 -2.6317 46 1 8.3994 -2.9122 -3.2909 47 1 6.6953 -3.2290 -3.6949 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177084098.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:30 Heat of formation + Delta-G solvation = -57.991481 kcal Electronic energy + Delta-G solvation = -32000.939787 eV Core-core repulsion = 27799.233964 eV Total energy + Delta-G solvation = -4201.705823 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.90141 -41.65647 -40.67562 -38.34145 -36.88843 -35.99267 -34.99463 -33.51263 -33.27514 -32.56224 -29.70584 -28.32233 -28.24806 -28.02603 -26.54940 -25.12907 -23.01035 -22.29703 -21.52105 -21.14643 -20.92947 -19.68289 -18.86890 -18.60039 -17.66884 -17.39146 -17.20493 -16.53611 -16.16305 -16.07867 -15.80927 -15.63209 -15.34293 -14.99841 -14.96930 -14.52503 -14.41283 -14.24859 -14.18449 -13.72810 -13.40530 -13.36124 -13.28313 -13.06234 -12.83880 -12.78141 -12.72848 -12.70738 -12.54860 -12.39789 -12.25742 -12.19643 -12.10548 -11.29546 -11.03481 -10.93539 -10.81041 -10.72461 -10.51416 -10.24133 -9.95533 -8.99553 -8.26238 -5.92914 1.14572 1.27109 1.45397 1.50259 1.57809 1.84909 1.96548 2.26950 2.40822 2.45795 2.87795 3.12997 3.24345 3.82543 3.84985 3.86341 4.00786 4.03742 4.07594 4.16868 4.32605 4.47153 4.60496 4.67007 4.69583 4.80086 4.81124 4.83662 4.84810 4.89858 4.93591 4.94852 5.12362 5.17893 5.24529 5.35242 5.43443 5.43970 5.45752 5.52687 5.63886 5.73758 5.97052 6.35253 6.51798 6.71040 7.05392 7.32586 7.43512 7.51964 7.85403 8.67523 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012945 B = 0.004308 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.550870 B = 6497.506265 C = 7285.356439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.135 3.865 2 N -0.441 5.441 3 C -0.351 4.351 4 H 0.116 0.884 5 C 0.003 3.997 6 N -0.894 5.894 7 Si 0.982 3.018 8 H -0.273 1.273 9 H -0.281 1.281 10 H -0.259 1.259 11 C 0.435 3.565 12 O -0.632 6.632 13 C 0.186 3.814 14 H 0.093 0.907 15 C -0.041 4.041 16 C 0.006 3.994 17 C -0.031 4.031 18 N -0.523 5.523 19 C 0.194 3.806 20 N -0.553 5.553 21 H 0.422 0.578 22 N -0.693 5.693 23 C 0.645 3.355 24 O -0.559 6.559 25 O -0.372 6.372 26 C 0.128 3.872 27 C -0.182 4.182 28 C -0.134 4.134 29 C -0.180 4.180 30 H 0.037 0.963 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.271 0.729 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.150 0.850 37 H 0.231 0.769 38 H 0.410 0.590 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.102 0.898 44 H 0.072 0.928 45 H 0.057 0.943 46 H 0.089 0.911 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.467 -11.393 1.707 18.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 N -0.157 5.157 3 C -0.478 4.478 4 H 0.133 0.867 5 C -0.200 4.200 6 N -0.532 5.532 7 Si 0.806 3.194 8 H -0.198 1.198 9 H -0.207 1.207 10 H -0.183 1.183 11 C 0.223 3.777 12 O -0.522 6.522 13 C 0.079 3.921 14 H 0.111 0.889 15 C -0.081 4.081 16 C -0.110 4.110 17 C -0.178 4.178 18 N -0.243 5.243 19 C -0.090 4.090 20 N -0.156 5.156 21 H 0.260 0.740 22 N -0.354 5.354 23 C 0.398 3.602 24 O -0.448 6.448 25 O -0.288 6.288 26 C 0.091 3.909 27 C -0.239 4.239 28 C -0.191 4.191 29 C -0.237 4.237 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.120 0.880 36 H 0.168 0.832 37 H 0.248 0.752 38 H 0.247 0.753 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.120 0.880 44 H 0.091 0.909 45 H 0.076 0.924 46 H 0.108 0.892 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 15.059 -10.652 1.474 18.504 hybrid contribution -1.262 -0.111 -0.231 1.288 sum 13.796 -10.764 1.243 17.543 Atomic orbital electron populations 1.21390 0.79679 0.97267 1.02500 1.43857 1.06500 1.05173 1.60185 1.20096 0.94362 0.83288 1.50093 0.86685 1.26073 0.96418 1.02440 0.95079 1.70295 1.07449 1.28606 1.46878 0.85129 0.77860 0.76878 0.79557 1.19814 1.20665 1.18315 1.20153 0.89534 0.83597 0.84407 1.90500 1.70273 1.31960 1.59470 1.20255 0.90400 0.84709 0.96780 0.88892 1.20259 0.88791 1.04501 0.94560 1.20633 0.92216 0.89574 1.08570 1.21830 0.89377 0.98762 1.07854 1.70140 1.20416 1.14125 1.19600 1.25178 0.89224 0.90728 1.03860 1.43026 1.07101 1.11751 1.53772 0.73994 1.44466 1.12071 1.11672 1.67154 1.18025 0.82592 0.82385 0.77156 1.90990 1.57451 1.37309 1.59007 1.86310 1.34244 1.31569 1.76652 1.22354 0.76434 0.98250 0.93813 1.22572 0.99589 1.03512 0.98248 1.21871 1.03069 0.91608 1.02574 1.22458 1.03457 1.00722 0.97067 0.94464 0.92383 0.92731 0.91852 0.89920 0.87988 0.83203 0.75245 0.75301 0.91418 0.89684 0.90651 0.91898 0.87990 0.90875 0.92358 0.89243 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.51 8.86 127.77 1.13 7.64 16 2 N -0.44 -21.26 3.03 -658.91 -1.99 -23.26 16 3 C -0.35 -16.74 8.61 84.04 0.72 -16.02 16 4 H 0.12 5.14 5.41 -2.91 -0.02 5.13 16 5 C 0.00 0.12 5.46 84.92 0.46 0.59 16 6 N -0.89 -44.65 9.51 21.66 0.21 -44.44 16 7 Si 0.98 38.75 29.56 68.60 2.03 40.78 16 8 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 9 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 10 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 11 C 0.43 19.56 6.90 87.66 0.60 20.16 16 12 O -0.63 -30.63 15.24 -3.07 -0.05 -30.68 16 13 C 0.19 7.00 1.80 44.25 0.08 7.08 16 14 H 0.09 3.92 6.30 -2.38 -0.02 3.91 16 15 C -0.04 -1.33 5.17 29.85 0.15 -1.17 16 16 C 0.01 0.19 4.21 40.95 0.17 0.36 16 17 C -0.03 -1.07 11.24 83.52 0.94 -0.13 16 18 N -0.52 -17.06 11.25 -200.31 -2.25 -19.31 16 19 C 0.19 4.71 11.11 180.26 2.00 6.71 16 20 N -0.55 -13.21 5.11 -186.49 -0.95 -14.16 16 21 H 0.42 7.98 8.96 -92.71 -0.83 7.15 16 22 N -0.69 -23.27 5.00 -573.73 -2.87 -26.14 16 23 C 0.65 20.60 6.85 129.79 0.89 21.49 16 24 O -0.56 -19.57 8.81 19.80 0.17 -19.40 16 25 O -0.37 -10.28 9.94 -55.38 -0.55 -10.83 16 26 C 0.13 2.77 1.13 -10.79 -0.01 2.75 16 27 C -0.18 -3.52 8.30 71.98 0.60 -2.92 16 28 C -0.13 -1.99 8.85 71.98 0.64 -1.36 16 29 C -0.18 -4.27 8.37 71.98 0.60 -3.67 16 30 H 0.04 1.75 6.93 -2.39 -0.02 1.73 16 31 H 0.06 2.85 7.22 -2.39 -0.02 2.83 16 32 H 0.05 2.77 6.91 -2.39 -0.02 2.76 16 33 H 0.27 12.92 8.31 -92.71 -0.77 12.15 16 34 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 35 H 0.10 3.55 6.95 -2.39 -0.02 3.53 16 36 H 0.15 5.33 8.06 -2.91 -0.02 5.31 16 37 H 0.23 3.54 8.06 -2.91 -0.02 3.52 16 38 H 0.41 13.71 7.83 -92.71 -0.73 12.98 16 39 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 40 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.07 1.92 3.98 -2.39 -0.01 1.91 16 42 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.06 1.80 5.88 -2.39 -0.01 1.79 16 46 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -62.33 371.60 2.20 -60.14 By element: Atomic # 1 Polarization: 46.33 SS G_CDS: -0.53 Total: 45.80 kcal Atomic # 6 Polarization: 32.52 SS G_CDS: 8.99 Total: 41.50 kcal Atomic # 7 Polarization: -119.45 SS G_CDS: -7.86 Total: -127.32 kcal Atomic # 8 Polarization: -60.48 SS G_CDS: -0.42 Total: -60.90 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal Total: -62.33 2.20 -60.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177084098.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.144 kcal (2) G-P(sol) polarization free energy of solvation -62.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds