Wall clock time and date at job start Tue Mar 31 2020 21:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37097 * 119.99894 * 2 1 4 4 H 1.08004 * 120.00367 * 141.26845 * 3 2 1 5 5 C 1.38946 * 119.99934 * 321.26733 * 3 2 1 6 6 N 1.31418 * 120.00439 * 156.68112 * 5 3 2 7 7 Si 1.86801 * 120.00202 * 336.68123 * 5 3 2 8 8 H 1.48506 * 109.47264 * 95.00191 * 7 5 3 9 9 H 1.48499 * 109.47441 * 215.00326 * 7 5 3 10 10 H 1.48507 * 109.46899 * 335.00595 * 7 5 3 11 11 C 1.34777 * 120.00495 * 180.27445 * 2 1 3 12 12 O 1.21292 * 120.00596 * 179.97438 * 11 2 1 13 13 C 1.50704 * 119.99673 * 359.97438 * 11 2 1 14 14 H 1.09008 * 109.46808 * 60.00250 * 13 11 2 15 15 C 1.52996 * 109.47388 * 300.00234 * 13 11 2 16 16 C 1.50700 * 109.47064 * 174.99680 * 15 13 11 17 17 C 1.34671 * 126.58727 * 85.02496 * 16 15 13 18 18 N 1.34131 * 108.01665 * 179.97438 * 17 16 15 19 19 C 1.30494 * 109.26020 * 359.97438 * 18 17 16 20 20 N 1.35052 * 108.69754 * 359.76518 * 19 18 17 21 21 H 0.97001 * 126.39438 * 180.26156 * 20 19 18 22 22 N 1.46505 * 109.47137 * 179.97438 * 13 11 2 23 23 C 1.34771 * 120.00034 * 204.99884 * 22 13 11 24 24 O 1.21518 * 120.00091 * 0.02562 * 23 22 13 25 25 O 1.34637 * 119.99904 * 180.02562 * 23 22 13 26 26 C 1.45202 * 117.00175 * 180.02562 * 25 23 22 27 27 C 1.53011 * 109.46779 * 59.99886 * 26 25 23 28 28 C 1.52994 * 109.47385 * 179.97438 * 26 25 23 29 29 C 1.52998 * 109.47098 * 300.00512 * 26 25 23 30 30 H 1.08997 * 109.46616 * 269.29302 * 1 2 3 31 31 H 1.08993 * 109.47223 * 29.30011 * 1 2 3 32 32 H 1.09003 * 109.46959 * 149.30134 * 1 2 3 33 33 H 0.97001 * 120.00068 * 180.02562 * 6 5 3 34 34 H 1.08999 * 109.47363 * 294.99666 * 15 13 11 35 35 H 1.08999 * 109.47096 * 55.00100 * 15 13 11 36 36 H 1.07994 * 125.99367 * 359.96429 * 17 16 15 37 37 H 1.08004 * 125.65156 * 180.02562 * 19 18 17 38 38 H 0.96998 * 119.99609 * 25.00591 * 22 13 11 39 39 H 1.08999 * 109.46953 * 60.00453 * 27 26 25 40 40 H 1.08999 * 109.46347 * 180.02562 * 27 26 25 41 41 H 1.08995 * 109.47042 * 300.00044 * 27 26 25 42 42 H 1.09003 * 109.46700 * 60.00106 * 28 26 25 43 43 H 1.09001 * 109.47569 * 180.02562 * 28 26 25 44 44 H 1.08999 * 109.47544 * 300.00281 * 28 26 25 45 45 H 1.08995 * 109.47649 * 59.99388 * 29 26 25 46 46 H 1.09001 * 109.46891 * 180.02562 * 29 26 25 47 47 H 1.09003 * 109.46821 * 299.99792 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.0524 1.2902 0.5852 5 6 1.6849 2.2583 -0.7529 6 7 2.0261 3.4858 -0.4306 7 14 0.5739 1.9534 -2.2233 8 1 -0.8455 2.0870 -1.8075 9 1 0.8742 2.9471 -3.2852 10 1 0.8096 0.5836 -2.7462 11 6 2.1390 -1.1671 -0.0056 12 8 3.3519 -1.1671 -0.0061 13 6 1.3855 -2.4723 -0.0113 14 1 0.7585 -2.5259 -0.9014 15 6 0.5063 -2.5591 1.2379 16 6 -0.3383 -3.8054 1.1720 17 6 0.0248 -5.0426 1.5610 18 7 -1.0092 -5.8675 1.3385 19 6 -1.9992 -5.1886 0.8269 20 7 -1.6241 -3.8963 0.7116 21 1 -2.1643 -3.1689 0.3652 22 7 2.3376 -3.5858 -0.0173 23 6 1.9711 -4.7830 -0.5160 24 8 0.8511 -4.9388 -0.9611 25 8 2.8459 -5.8064 -0.5211 26 6 2.3829 -7.0667 -1.0741 27 6 1.9784 -6.8643 -2.5358 28 6 3.5067 -8.1019 -0.9951 29 6 1.1758 -7.5615 -0.2748 30 1 -0.3632 -0.0127 1.0276 31 1 -0.3633 0.8961 -0.5029 32 1 -0.3633 -0.8837 -0.5247 33 1 1.7008 4.2334 -0.9561 34 1 1.1383 -2.5949 2.1252 35 1 -0.1412 -1.6837 1.2880 36 1 0.9808 -5.3216 1.9787 37 1 -2.9609 -5.5923 0.5465 38 1 3.2316 -3.4613 0.3377 39 1 2.8383 -6.5117 -3.1053 40 1 1.6304 -7.8102 -2.9507 41 1 1.1779 -6.1267 -2.5924 42 1 3.7953 -8.2461 0.0461 43 1 3.1593 -9.0478 -1.4106 44 1 4.3664 -7.7491 -1.5648 45 1 0.3753 -6.8240 -0.3314 46 1 0.8286 -8.5078 -0.6896 47 1 1.4640 -7.7057 0.7665 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177084099.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:35 Heat of formation + Delta-G solvation = -28.172492 kcal Electronic energy + Delta-G solvation = -31889.530386 eV Core-core repulsion = 27689.117612 eV Total energy + Delta-G solvation = -4200.412774 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.92984 -40.48712 -39.30187 -37.11676 -35.18154 -34.74962 -33.93132 -32.49081 -32.19667 -31.23263 -28.42634 -27.39277 -27.22112 -26.68773 -25.32425 -23.91788 -21.97420 -21.25218 -20.60281 -19.93386 -19.23801 -18.11745 -17.67232 -17.28418 -16.46494 -16.08287 -15.95314 -15.62545 -15.25337 -14.89891 -14.39115 -14.30658 -14.20749 -14.00766 -13.57342 -13.46402 -13.30533 -13.14892 -12.95535 -12.72709 -12.48725 -12.38283 -12.18908 -11.94037 -11.85140 -11.77807 -11.70293 -11.52660 -11.24350 -11.17329 -10.94373 -10.50720 -10.19523 -10.09767 -9.83898 -9.77272 -9.63392 -9.24794 -9.14166 -8.75477 -7.97525 -7.89083 -6.56099 -4.14820 2.26117 2.35037 2.89539 3.09926 3.14907 3.16056 3.29488 3.40285 3.51301 3.99149 4.13898 4.38444 4.73536 4.79085 4.82527 4.84294 4.98226 4.99256 5.11942 5.20950 5.34897 5.40071 5.46100 5.55590 5.58047 5.62082 5.70382 5.72958 5.81623 5.84262 5.87232 5.95718 5.98768 6.03013 6.12737 6.29617 6.41232 6.52103 6.67915 6.78040 6.96149 7.34824 7.56459 7.75310 8.08760 8.27282 8.28292 8.69808 8.75449 9.11580 9.50150 10.55148 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014883 B = 0.003964 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.903189 B = 7061.836362 C = 7960.671488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.458 5.458 3 C -0.322 4.322 4 H 0.108 0.892 5 C 0.065 3.935 6 N -0.854 5.854 7 Si 0.874 3.126 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.264 1.264 11 C 0.456 3.544 12 O -0.554 6.554 13 C 0.158 3.842 14 H 0.103 0.897 15 C -0.072 4.072 16 C 0.003 3.997 17 C -0.012 4.012 18 N -0.486 5.486 19 C 0.177 3.823 20 N -0.560 5.560 21 H 0.414 0.586 22 N -0.689 5.689 23 C 0.655 3.345 24 O -0.559 6.559 25 O -0.366 6.366 26 C 0.137 3.863 27 C -0.181 4.181 28 C -0.140 4.140 29 C -0.180 4.180 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.276 0.724 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.152 0.848 37 H 0.198 0.802 38 H 0.414 0.586 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.087 0.913 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.106 0.894 46 H 0.058 0.942 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.452 -17.520 0.260 19.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.179 5.179 3 C -0.448 4.448 4 H 0.126 0.874 5 C -0.142 4.142 6 N -0.489 5.489 7 Si 0.701 3.299 8 H -0.201 1.201 9 H -0.211 1.211 10 H -0.188 1.188 11 C 0.243 3.757 12 O -0.435 6.435 13 C 0.049 3.951 14 H 0.121 0.879 15 C -0.112 4.112 16 C -0.113 4.113 17 C -0.160 4.160 18 N -0.205 5.205 19 C -0.106 4.106 20 N -0.163 5.163 21 H 0.251 0.749 22 N -0.349 5.349 23 C 0.408 3.592 24 O -0.448 6.448 25 O -0.281 6.281 26 C 0.101 3.899 27 C -0.239 4.239 28 C -0.197 4.197 29 C -0.238 4.238 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.169 0.831 37 H 0.215 0.785 38 H 0.251 0.749 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.106 0.894 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.125 0.875 46 H 0.077 0.923 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.346 -18.329 0.174 19.747 hybrid contribution -0.586 1.237 -1.210 1.827 sum -7.932 -17.092 -1.036 18.871 Atomic orbital electron populations 1.22241 0.83591 1.01670 1.01181 1.43556 1.03949 1.05353 1.65068 1.19031 1.11739 0.85298 1.28779 0.87401 1.25370 0.97117 0.94723 0.97016 1.69762 1.43496 0.98245 1.37430 0.87011 0.79882 0.79351 0.83649 1.20075 1.21069 1.18844 1.20102 0.88268 0.84323 0.82970 1.90583 1.13400 1.86267 1.53219 1.20708 0.89863 0.85248 0.99295 0.87944 1.20807 0.97010 0.94342 0.99018 1.20865 0.86209 0.98155 1.06072 1.21660 0.98614 0.88915 1.06794 1.70142 1.00143 1.33029 1.17191 1.24639 1.00664 0.80452 1.04853 1.43096 1.12760 1.11026 1.49410 0.74891 1.44315 1.18120 1.07445 1.65064 1.17859 0.82689 0.81028 0.77652 1.90883 1.20098 1.82879 1.50939 1.86283 1.43755 1.20387 1.77664 1.22016 0.95042 0.79617 0.93263 1.22494 1.03189 1.03525 0.94643 1.21849 0.97737 0.97017 1.03138 1.22578 0.99014 1.02859 0.99299 0.92189 0.91340 0.92717 0.91338 0.88675 0.88363 0.83064 0.78545 0.74903 0.92509 0.91638 0.89419 0.91570 0.90507 0.91740 0.87501 0.92318 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.97 7.61 59.85 0.46 1.43 16 2 N -0.46 -10.05 2.54 -122.19 -0.31 -10.36 16 3 C -0.32 -8.52 9.32 -14.93 -0.14 -8.65 16 4 H 0.11 3.22 7.94 -52.48 -0.42 2.81 16 5 C 0.07 1.70 5.27 -17.47 -0.09 1.60 16 6 N -0.85 -23.44 13.96 55.50 0.77 -22.67 16 7 Si 0.87 19.37 25.20 -169.99 -4.28 15.09 16 8 H -0.27 -5.53 6.65 56.52 0.38 -5.16 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 10 H -0.26 -5.91 7.11 56.52 0.40 -5.50 16 11 C 0.46 9.63 7.10 -10.98 -0.08 9.56 16 12 O -0.55 -13.65 15.72 5.55 0.09 -13.56 16 13 C 0.16 2.59 1.85 -69.08 -0.13 2.47 16 14 H 0.10 1.74 6.83 -51.92 -0.35 1.38 16 15 C -0.07 -0.98 5.11 -27.88 -0.14 -1.12 16 16 C 0.00 0.04 4.89 -81.60 -0.40 -0.36 16 17 C -0.01 -0.17 7.88 -17.81 -0.14 -0.31 16 18 N -0.49 -6.88 9.96 -14.66 -0.15 -7.02 16 19 C 0.18 2.04 13.04 -90.37 -1.18 0.86 16 20 N -0.56 -6.16 6.15 -10.30 -0.06 -6.22 16 21 H 0.41 3.39 8.96 -40.82 -0.37 3.02 16 22 N -0.69 -11.11 4.90 -59.86 -0.29 -11.41 16 23 C 0.65 10.42 6.01 54.05 0.33 10.74 16 24 O -0.56 -9.23 8.80 -19.29 -0.17 -9.40 16 25 O -0.37 -5.46 9.94 -40.32 -0.40 -5.86 16 26 C 0.14 1.73 1.13 -90.62 -0.10 1.62 16 27 C -0.18 -2.25 8.37 37.16 0.31 -1.93 16 28 C -0.14 -1.37 8.85 37.15 0.33 -1.04 16 29 C -0.18 -2.30 8.21 37.16 0.30 -1.99 16 30 H 0.06 0.87 6.83 -51.93 -0.35 0.52 16 31 H 0.07 1.27 3.53 -51.93 -0.18 1.09 16 32 H 0.05 0.77 6.09 -51.93 -0.32 0.46 16 33 H 0.28 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.10 1.23 4.44 -51.93 -0.23 1.00 16 36 H 0.15 2.23 7.91 -52.49 -0.42 1.81 16 37 H 0.20 1.53 8.06 -52.48 -0.42 1.10 16 38 H 0.41 6.75 7.90 -40.82 -0.32 6.43 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 1.29 5.88 -51.93 -0.31 0.99 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.11 1.60 3.78 -51.93 -0.20 1.40 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 364.30 15.07 5.49 5.49 Total: -1.00 -32.13 364.30 -6.42 -38.55 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: -6.43 Total: 14.52 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: -0.67 Total: 12.86 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: -0.04 Total: -57.68 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -0.48 Total: -28.82 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.28 Total: 15.09 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.13 -6.42 -38.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177084099.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.378 kcal (2) G-P(sol) polarization free energy of solvation -32.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds