Wall clock time and date at job start Tue Mar 31 2020 21:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37097 * 119.99894 * 2 1 4 4 H 1.08004 * 120.00367 * 141.26845 * 3 2 1 5 5 C 1.38946 * 119.99934 * 321.26733 * 3 2 1 6 6 N 1.31418 * 120.00439 * 156.68112 * 5 3 2 7 7 Si 1.86801 * 120.00202 * 336.68123 * 5 3 2 8 8 H 1.48506 * 109.47264 * 95.00191 * 7 5 3 9 9 H 1.48499 * 109.47441 * 215.00326 * 7 5 3 10 10 H 1.48507 * 109.46899 * 335.00595 * 7 5 3 11 11 C 1.34777 * 120.00495 * 180.27445 * 2 1 3 12 12 O 1.21292 * 120.00596 * 179.97438 * 11 2 1 13 13 C 1.50704 * 119.99673 * 359.97438 * 11 2 1 14 14 H 1.09008 * 109.46808 * 60.00250 * 13 11 2 15 15 C 1.52996 * 109.47388 * 300.00234 * 13 11 2 16 16 C 1.50700 * 109.47064 * 174.99680 * 15 13 11 17 17 C 1.34671 * 126.58727 * 85.02496 * 16 15 13 18 18 N 1.34131 * 108.01665 * 179.97438 * 17 16 15 19 19 C 1.30494 * 109.26020 * 359.97438 * 18 17 16 20 20 N 1.35052 * 108.69754 * 359.76518 * 19 18 17 21 21 H 0.97001 * 126.39438 * 180.26156 * 20 19 18 22 22 N 1.46505 * 109.47137 * 179.97438 * 13 11 2 23 23 C 1.34771 * 120.00034 * 204.99884 * 22 13 11 24 24 O 1.21518 * 120.00091 * 0.02562 * 23 22 13 25 25 O 1.34637 * 119.99904 * 180.02562 * 23 22 13 26 26 C 1.45202 * 117.00175 * 180.02562 * 25 23 22 27 27 C 1.53011 * 109.46779 * 59.99886 * 26 25 23 28 28 C 1.52994 * 109.47385 * 179.97438 * 26 25 23 29 29 C 1.52998 * 109.47098 * 300.00512 * 26 25 23 30 30 H 1.08997 * 109.46616 * 269.29302 * 1 2 3 31 31 H 1.08993 * 109.47223 * 29.30011 * 1 2 3 32 32 H 1.09003 * 109.46959 * 149.30134 * 1 2 3 33 33 H 0.97001 * 120.00068 * 180.02562 * 6 5 3 34 34 H 1.08999 * 109.47363 * 294.99666 * 15 13 11 35 35 H 1.08999 * 109.47096 * 55.00100 * 15 13 11 36 36 H 1.07994 * 125.99367 * 359.96429 * 17 16 15 37 37 H 1.08004 * 125.65156 * 180.02562 * 19 18 17 38 38 H 0.96998 * 119.99609 * 25.00591 * 22 13 11 39 39 H 1.08999 * 109.46953 * 60.00453 * 27 26 25 40 40 H 1.08999 * 109.46347 * 180.02562 * 27 26 25 41 41 H 1.08995 * 109.47042 * 300.00044 * 27 26 25 42 42 H 1.09003 * 109.46700 * 60.00106 * 28 26 25 43 43 H 1.09001 * 109.47569 * 180.02562 * 28 26 25 44 44 H 1.08999 * 109.47544 * 300.00281 * 28 26 25 45 45 H 1.08995 * 109.47649 * 59.99388 * 29 26 25 46 46 H 1.09001 * 109.46891 * 180.02562 * 29 26 25 47 47 H 1.09003 * 109.46821 * 299.99792 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.0524 1.2902 0.5852 5 6 1.6849 2.2583 -0.7529 6 7 2.0261 3.4858 -0.4306 7 14 0.5739 1.9534 -2.2233 8 1 -0.8455 2.0870 -1.8075 9 1 0.8742 2.9471 -3.2852 10 1 0.8096 0.5836 -2.7462 11 6 2.1390 -1.1671 -0.0056 12 8 3.3519 -1.1671 -0.0061 13 6 1.3855 -2.4723 -0.0113 14 1 0.7585 -2.5259 -0.9014 15 6 0.5063 -2.5591 1.2379 16 6 -0.3383 -3.8054 1.1720 17 6 0.0248 -5.0426 1.5610 18 7 -1.0092 -5.8675 1.3385 19 6 -1.9992 -5.1886 0.8269 20 7 -1.6241 -3.8963 0.7116 21 1 -2.1643 -3.1689 0.3652 22 7 2.3376 -3.5858 -0.0173 23 6 1.9711 -4.7830 -0.5160 24 8 0.8511 -4.9388 -0.9611 25 8 2.8459 -5.8064 -0.5211 26 6 2.3829 -7.0667 -1.0741 27 6 1.9784 -6.8643 -2.5358 28 6 3.5067 -8.1019 -0.9951 29 6 1.1758 -7.5615 -0.2748 30 1 -0.3632 -0.0127 1.0276 31 1 -0.3633 0.8961 -0.5029 32 1 -0.3633 -0.8837 -0.5247 33 1 1.7008 4.2334 -0.9561 34 1 1.1383 -2.5949 2.1252 35 1 -0.1412 -1.6837 1.2880 36 1 0.9808 -5.3216 1.9787 37 1 -2.9609 -5.5923 0.5465 38 1 3.2316 -3.4613 0.3377 39 1 2.8383 -6.5117 -3.1053 40 1 1.6304 -7.8102 -2.9507 41 1 1.1779 -6.1267 -2.5924 42 1 3.7953 -8.2461 0.0461 43 1 3.1593 -9.0478 -1.4106 44 1 4.3664 -7.7491 -1.5648 45 1 0.3753 -6.8240 -0.3314 46 1 0.8286 -8.5078 -0.6896 47 1 1.4640 -7.7057 0.7665 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177084099.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:34 Heat of formation + Delta-G solvation = -51.590334 kcal Electronic energy + Delta-G solvation = -31890.545860 eV Core-core repulsion = 27689.117612 eV Total energy + Delta-G solvation = -4201.428248 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.92747 -41.66496 -40.85048 -38.35291 -36.90360 -36.09382 -35.00338 -34.18981 -33.38383 -32.37400 -29.70225 -28.27673 -28.20484 -28.16079 -26.93887 -25.25159 -23.19536 -22.21737 -21.62036 -21.15691 -20.72235 -19.41921 -19.10427 -18.66913 -17.78528 -17.49077 -17.28057 -17.08182 -16.59916 -16.05740 -15.83775 -15.57719 -15.28882 -15.01799 -14.85924 -14.68442 -14.63820 -14.37017 -14.33190 -14.13197 -13.82934 -13.49443 -13.34238 -13.23933 -13.04012 -12.83720 -12.80690 -12.70596 -12.66929 -12.32322 -12.21823 -12.17677 -11.88640 -11.24979 -11.09759 -10.94821 -10.80179 -10.61489 -10.53512 -10.29268 -9.76845 -8.97048 -8.55320 -6.18952 1.14781 1.17337 1.27605 1.33863 1.43465 1.77012 1.94510 2.14394 2.41780 2.45345 2.61343 2.89098 3.20183 3.57660 3.85641 3.87615 3.90126 3.98218 4.03203 4.05901 4.13422 4.23893 4.31606 4.52194 4.62045 4.65669 4.70877 4.71403 4.79222 4.82893 4.88286 4.90910 4.94740 5.00274 5.12276 5.22535 5.37301 5.44750 5.48967 5.61527 5.67474 5.95512 6.02405 6.45203 6.48392 6.77504 6.85798 7.18954 7.33383 7.46480 7.70814 8.61114 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014883 B = 0.003964 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.903189 B = 7061.836362 C = 7960.671488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.467 5.467 3 C -0.338 4.338 4 H 0.051 0.949 5 C 0.021 3.979 6 N -0.901 5.901 7 Si 0.942 3.058 8 H -0.232 1.232 9 H -0.291 1.291 10 H -0.265 1.265 11 C 0.455 3.545 12 O -0.599 6.599 13 C 0.176 3.824 14 H 0.108 0.892 15 C -0.061 4.061 16 C -0.003 4.003 17 C -0.023 4.023 18 N -0.516 5.516 19 C 0.188 3.812 20 N -0.550 5.550 21 H 0.430 0.570 22 N -0.694 5.694 23 C 0.656 3.344 24 O -0.563 6.563 25 O -0.375 6.375 26 C 0.128 3.872 27 C -0.176 4.176 28 C -0.136 4.136 29 C -0.173 4.173 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.282 0.718 34 H 0.092 0.908 35 H 0.115 0.885 36 H 0.137 0.863 37 H 0.235 0.765 38 H 0.410 0.590 39 H 0.054 0.946 40 H 0.088 0.912 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.101 0.899 44 H 0.064 0.936 45 H 0.088 0.912 46 H 0.076 0.924 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.589 -19.637 -0.953 22.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.189 5.189 3 C -0.466 4.466 4 H 0.069 0.931 5 C -0.183 4.183 6 N -0.538 5.538 7 Si 0.765 3.235 8 H -0.156 1.156 9 H -0.218 1.218 10 H -0.189 1.189 11 C 0.243 3.757 12 O -0.483 6.483 13 C 0.067 3.933 14 H 0.125 0.875 15 C -0.101 4.101 16 C -0.120 4.120 17 C -0.171 4.171 18 N -0.235 5.235 19 C -0.095 4.095 20 N -0.154 5.154 21 H 0.270 0.730 22 N -0.354 5.354 23 C 0.410 3.590 24 O -0.451 6.451 25 O -0.290 6.290 26 C 0.091 3.909 27 C -0.233 4.233 28 C -0.193 4.193 29 C -0.230 4.230 30 H 0.108 0.892 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.133 0.867 36 H 0.155 0.845 37 H 0.251 0.749 38 H 0.247 0.753 39 H 0.073 0.927 40 H 0.107 0.893 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.120 0.880 44 H 0.084 0.916 45 H 0.107 0.893 46 H 0.094 0.906 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.533 -20.446 -1.027 23.023 hybrid contribution 0.457 1.801 -0.781 2.015 sum -10.077 -18.645 -1.808 21.271 Atomic orbital electron populations 1.22521 0.80193 1.02947 1.03693 1.43619 1.05995 1.04086 1.65172 1.18640 1.11089 0.87672 1.29169 0.93089 1.26087 0.99041 0.93902 0.99238 1.69867 1.45687 0.99373 1.38843 0.85947 0.80059 0.78614 0.78871 1.15599 1.21776 1.18941 1.20860 0.87998 0.85728 0.81066 1.90556 1.15754 1.87266 1.54712 1.20490 0.89308 0.82566 1.00942 0.87481 1.20671 0.96781 0.95433 0.97217 1.20611 0.87191 0.97300 1.06901 1.21562 0.98526 0.89622 1.07363 1.70122 1.00823 1.33863 1.18702 1.25390 1.01195 0.80274 1.02688 1.43040 1.11961 1.11590 1.48781 0.73000 1.44343 1.18011 1.07718 1.65376 1.17833 0.82763 0.81039 0.77414 1.90871 1.20214 1.82996 1.51068 1.86298 1.43876 1.21021 1.77826 1.22368 0.96176 0.79110 0.93209 1.22436 1.02233 1.04036 0.94607 1.21881 0.96845 0.97091 1.03519 1.22479 0.98419 1.03095 0.99000 0.89210 0.92194 0.89028 0.90850 0.88995 0.86699 0.84497 0.74893 0.75302 0.92719 0.89272 0.91806 0.91480 0.88013 0.91649 0.89341 0.90554 0.93266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.51 7.61 127.77 0.97 2.48 16 2 N -0.47 -20.44 2.54 -658.89 -1.68 -22.12 16 3 C -0.34 -18.57 9.32 84.04 0.78 -17.78 16 4 H 0.05 3.30 7.94 -2.91 -0.02 3.28 16 5 C 0.02 1.11 5.27 84.92 0.45 1.56 16 6 N -0.90 -50.90 13.96 21.66 0.30 -50.60 16 7 Si 0.94 39.13 25.20 68.60 1.73 40.86 16 8 H -0.23 -8.07 6.65 99.48 0.66 -7.41 16 9 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 10 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 11 C 0.46 19.38 7.10 87.66 0.62 20.00 16 12 O -0.60 -30.81 15.72 -3.07 -0.05 -30.86 16 13 C 0.18 5.59 1.85 44.24 0.08 5.67 16 14 H 0.11 3.37 6.83 -2.38 -0.02 3.35 16 15 C -0.06 -1.56 5.11 29.85 0.15 -1.41 16 16 C 0.00 -0.08 4.89 40.95 0.20 0.12 16 17 C -0.02 -0.64 7.88 83.52 0.66 0.02 16 18 N -0.52 -13.58 9.96 -200.31 -2.00 -15.57 16 19 C 0.19 3.69 13.04 180.26 2.35 6.04 16 20 N -0.55 -10.16 6.15 -186.49 -1.15 -11.31 16 21 H 0.43 5.12 8.96 -92.71 -0.83 4.29 16 22 N -0.69 -22.37 4.90 -573.71 -2.81 -25.19 16 23 C 0.66 20.51 6.01 129.79 0.78 21.29 16 24 O -0.56 -17.79 8.80 19.78 0.17 -17.62 16 25 O -0.37 -11.03 9.94 -55.47 -0.55 -11.58 16 26 C 0.13 3.01 1.13 -10.79 -0.01 3.00 16 27 C -0.18 -4.04 8.37 71.99 0.60 -3.44 16 28 C -0.14 -2.38 8.85 71.98 0.64 -1.75 16 29 C -0.17 -4.12 8.21 71.98 0.59 -3.53 16 30 H 0.09 2.30 6.83 -2.39 -0.02 2.28 16 31 H 0.06 2.01 3.53 -2.39 -0.01 2.00 16 32 H 0.09 2.19 6.09 -2.39 -0.01 2.18 16 33 H 0.28 14.57 8.31 -92.71 -0.77 13.80 16 34 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.12 2.50 4.44 -2.39 -0.01 2.49 16 36 H 0.14 4.07 7.91 -2.91 -0.02 4.04 16 37 H 0.23 2.55 8.06 -2.91 -0.02 2.53 16 38 H 0.41 13.81 7.90 -92.71 -0.73 13.08 16 39 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.06 1.79 5.88 -2.39 -0.01 1.78 16 42 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.09 2.51 3.78 -2.39 -0.01 2.50 16 46 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -74.27 364.30 2.27 -72.00 By element: Atomic # 1 Polarization: 40.28 SS G_CDS: -0.57 Total: 39.71 kcal Atomic # 6 Polarization: 23.41 SS G_CDS: 8.87 Total: 32.28 kcal Atomic # 7 Polarization: -117.46 SS G_CDS: -7.33 Total: -124.79 kcal Atomic # 8 Polarization: -59.63 SS G_CDS: -0.43 Total: -60.05 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 1.73 Total: 40.86 kcal Total: -74.27 2.27 -72.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177084099.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.412 kcal (2) G-P(sol) polarization free energy of solvation -74.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds