Wall clock time and date at job start Tue Mar 31 2020 21:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47240 * 2 1 4 4 C 1.52999 * 109.47232 * 240.00126 * 2 1 3 5 5 O 1.45198 * 109.47193 * 120.00065 * 2 1 3 6 6 C 1.34635 * 117.00226 * 59.99575 * 5 2 1 7 7 O 1.21516 * 119.99632 * 0.02562 * 6 5 2 8 8 N 1.34774 * 120.00164 * 180.02562 * 6 5 2 9 9 C 1.46504 * 120.00023 * 180.02562 * 8 6 5 10 10 H 1.09005 * 109.46526 * 324.99651 * 9 8 6 11 11 C 1.50698 * 109.47338 * 84.99795 * 9 8 6 12 12 H 1.07999 * 119.99664 * 240.00263 * 11 9 8 13 13 C 1.37874 * 120.00197 * 59.99854 * 11 9 8 14 14 N 1.31515 * 119.99675 * 0.02562 * 13 11 9 15 15 Si 1.86801 * 120.00246 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.46897 * 60.00190 * 15 13 11 17 17 H 1.48497 * 109.47320 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46961 * 300.00578 * 15 13 11 19 19 C 1.50698 * 109.46781 * 205.00074 * 9 8 6 20 20 O 1.21275 * 120.00468 * 359.97438 * 19 9 8 21 21 N 1.34786 * 119.99553 * 179.97438 * 19 9 8 22 22 C 1.46497 * 119.99721 * 179.97438 * 21 19 9 23 23 C 1.52999 * 109.47250 * 180.02562 * 22 21 19 24 24 C 1.50698 * 109.47391 * 179.97438 * 23 22 21 25 25 C 1.39870 * 125.89873 * 124.99918 * 24 23 22 26 26 C 1.35318 * 107.92236 * 179.76106 * 25 24 23 27 27 N 1.34948 * 107.74290 * 0.42279 * 26 25 24 28 28 H 0.97001 * 126.03958 * 179.84649 * 27 26 25 29 29 N 1.30835 * 125.89830 * 305.02715 * 24 23 22 30 30 H 1.08998 * 109.47278 * 300.00052 * 1 2 3 31 31 H 1.09004 * 109.47043 * 60.00159 * 1 2 3 32 32 H 1.08999 * 109.47100 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47244 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47233 * 299.99853 * 3 2 1 35 35 H 1.08998 * 109.47027 * 59.99794 * 3 2 1 36 36 H 1.08999 * 109.47019 * 299.99978 * 4 2 1 37 37 H 1.08996 * 109.47235 * 60.00151 * 4 2 1 38 38 H 1.09002 * 109.46815 * 180.02562 * 4 2 1 39 39 H 0.97002 * 120.00009 * 359.97438 * 8 6 5 40 40 H 0.97001 * 119.99819 * 179.97438 * 14 13 11 41 41 H 0.96992 * 120.00332 * 359.97438 * 21 19 9 42 42 H 1.09002 * 109.47287 * 59.99732 * 22 21 19 43 43 H 1.09004 * 109.47331 * 300.00199 * 22 21 19 44 44 H 1.09002 * 109.47348 * 59.99582 * 23 22 21 45 45 H 1.09004 * 109.46963 * 300.00237 * 23 22 21 46 46 H 1.08008 * 126.03860 * 0.02562 * 25 24 23 47 47 H 1.07999 * 126.12849 * 180.26834 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3384 7 8 0.9515 -2.5096 0.5036 8 7 2.0671 -2.6654 2.4172 9 6 1.6739 -4.0668 2.5832 10 1 0.6650 -4.2094 2.1958 11 6 2.6320 -4.9504 1.8268 12 1 2.2674 -5.5907 1.0371 13 6 3.9741 -4.9414 2.1426 14 7 4.4179 -4.1620 3.1045 15 14 5.1616 -6.0373 1.2055 16 1 5.1300 -5.6823 -0.2361 17 1 6.5359 -5.8433 1.7335 18 1 4.7627 -7.4577 1.3743 19 6 1.7059 -4.4276 4.0460 20 8 2.0261 -3.5962 4.8688 21 7 1.3786 -5.6744 4.4399 22 6 1.4103 -6.0252 5.8619 23 6 0.9995 -7.4888 6.0353 24 6 1.0327 -7.8499 7.4980 25 6 -0.0267 -8.3918 8.2332 26 6 0.4005 -8.5779 9.5037 27 7 1.6816 -8.1596 9.5723 28 1 2.2445 -8.1719 10.3622 29 7 2.0572 -7.7103 8.2996 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1299 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2492 37 1 1.6767 -0.2074 -2.1392 38 1 3.1300 -0.7216 -1.2489 39 1 2.6268 -2.2365 3.0834 40 1 5.3620 -4.1560 3.3270 41 1 1.1222 -6.3392 3.7819 42 1 0.7179 -5.3858 6.4094 43 1 2.4194 -5.8831 6.2488 44 1 1.6922 -8.1280 5.4878 45 1 -0.0095 -7.6313 5.6483 46 1 -1.0104 -8.6248 7.8530 47 1 -0.1807 -8.9856 10.3176 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180782286.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:17 Heat of formation + Delta-G solvation = -52.679586 kcal Electronic energy + Delta-G solvation = -29690.790788 eV Core-core repulsion = 25489.315306 eV Total energy + Delta-G solvation = -4201.475482 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.19025 -39.78216 -38.53901 -36.36992 -34.93551 -33.78564 -33.38119 -32.35564 -31.75082 -30.01434 -29.21214 -27.44529 -27.05724 -26.94977 -24.13522 -23.07052 -21.47457 -21.08539 -19.90936 -19.21333 -19.08142 -18.20086 -17.48150 -16.70266 -15.92042 -15.42771 -15.22986 -15.12215 -14.85612 -14.77187 -14.40260 -14.00338 -13.77563 -13.67903 -13.61225 -13.52893 -13.14118 -12.84394 -12.42286 -12.18122 -12.10337 -11.94943 -11.80180 -11.61129 -11.46105 -11.30203 -11.18540 -11.07232 -10.96615 -10.74380 -10.71735 -10.51761 -10.16714 -9.96546 -9.63354 -9.42475 -9.15055 -8.87857 -8.81262 -8.39465 -8.07417 -7.63300 -6.19476 -4.34826 1.83011 2.71401 2.81927 3.14906 3.27311 3.30998 3.32995 4.00223 4.02613 4.26457 4.33545 4.70564 4.74380 5.04733 5.15201 5.17654 5.22357 5.32287 5.38061 5.48547 5.52976 5.68191 5.75355 5.79365 5.86261 5.90063 5.99438 6.07174 6.17866 6.25289 6.27574 6.30088 6.38055 6.54472 6.60671 6.67904 6.72814 6.83636 7.19031 7.34704 7.45376 7.64024 7.70349 7.74979 7.93549 8.54512 8.69821 8.91902 9.36323 9.51867 9.67968 10.83159 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014075 B = 0.002763 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.850726 B =10130.722520 C =11352.534583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.136 3.864 3 C -0.139 4.139 4 C -0.181 4.181 5 O -0.375 6.375 6 C 0.645 3.355 7 O -0.591 6.591 8 N -0.660 5.660 9 C 0.267 3.733 10 H 0.069 0.931 11 C -0.539 4.539 12 H 0.071 0.929 13 C 0.079 3.921 14 N -0.856 5.856 15 Si 0.898 3.102 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.273 1.273 19 C 0.543 3.457 20 O -0.554 6.554 21 N -0.731 5.731 22 C 0.135 3.865 23 C -0.052 4.052 24 C 0.086 3.914 25 C -0.268 4.268 26 C 0.052 3.948 27 N -0.481 5.481 28 H 0.437 0.563 29 N -0.284 5.284 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.406 0.594 40 H 0.268 0.732 41 H 0.399 0.601 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.148 0.852 47 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.022 -3.129 5.802 10.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.099 3.901 3 C -0.196 4.196 4 C -0.238 4.238 5 O -0.290 6.290 6 C 0.398 3.602 7 O -0.483 6.483 8 N -0.317 5.317 9 C 0.163 3.837 10 H 0.087 0.913 11 C -0.578 4.578 12 H 0.090 0.910 13 C -0.129 4.129 14 N -0.490 5.490 15 Si 0.726 3.274 16 H -0.200 1.200 17 H -0.213 1.213 18 H -0.199 1.199 19 C 0.331 3.669 20 O -0.431 6.431 21 N -0.385 5.385 22 C 0.010 3.990 23 C -0.091 4.091 24 C -0.082 4.082 25 C -0.298 4.298 26 C -0.095 4.095 27 N -0.189 5.189 28 H 0.281 0.719 29 N -0.107 5.107 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.111 0.889 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.243 0.757 40 H 0.078 0.922 41 H 0.233 0.767 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.166 0.834 47 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -6.773 -2.288 6.206 9.467 hybrid contribution 0.482 -1.060 -0.030 1.164 sum -6.291 -3.347 6.176 9.430 Atomic orbital electron populations 1.22493 0.94720 1.05100 1.01408 1.21799 0.93869 0.91181 0.83283 1.21822 1.02069 0.93402 1.02295 1.22486 1.01384 1.03924 0.95987 1.86305 1.72218 1.25271 1.45214 1.18055 0.79504 0.79481 0.83207 1.90753 1.43443 1.70344 1.43787 1.45123 1.52409 1.12193 1.21994 1.18275 0.97197 0.78888 0.89327 0.91330 1.21136 0.92048 1.24598 1.19998 0.91050 1.25104 0.98570 0.94941 0.94293 1.69924 1.15595 1.36125 1.27339 0.86548 0.79745 0.80845 0.80297 1.20013 1.21263 1.19880 1.21029 0.73455 0.80911 0.91468 1.90525 1.47467 1.49731 1.55373 1.45600 1.72246 1.13704 1.06917 1.20990 1.01823 0.92670 0.83500 1.20249 1.03476 0.97302 0.88113 1.22207 0.91402 0.98079 0.96466 1.21478 1.01579 1.13315 0.93380 1.22563 0.86949 1.00606 0.99420 1.46399 1.10924 1.50948 1.10615 0.71915 1.77429 1.22820 1.21537 0.88955 0.92687 0.92082 0.89079 0.91766 0.90898 0.91865 0.88862 0.92209 0.92541 0.75748 0.92171 0.76697 0.92567 0.91512 0.89318 0.89319 0.83440 0.80853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.83 8.37 37.15 0.31 -2.52 16 2 C 0.14 2.32 1.13 -90.62 -0.10 2.22 16 3 C -0.14 -1.84 8.85 37.16 0.33 -1.51 16 4 C -0.18 -3.04 8.37 37.16 0.31 -2.73 16 5 O -0.37 -7.98 9.94 -40.31 -0.40 -8.38 16 6 C 0.65 15.33 8.01 54.05 0.43 15.76 16 7 O -0.59 -14.42 11.54 -19.29 -0.22 -14.64 16 8 N -0.66 -16.43 4.36 -61.01 -0.27 -16.70 16 9 C 0.27 6.52 2.57 -70.23 -0.18 6.34 16 10 H 0.07 1.63 7.58 -51.93 -0.39 1.24 16 11 C -0.54 -13.79 8.66 -34.44 -0.30 -14.09 16 12 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 13 C 0.08 2.06 5.23 -17.82 -0.09 1.97 16 14 N -0.86 -23.40 11.58 55.43 0.64 -22.76 16 15 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 16 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 C 0.54 12.85 6.00 -10.98 -0.07 12.79 16 20 O -0.55 -14.70 15.79 5.56 0.09 -14.61 16 21 N -0.73 -14.10 5.46 -60.29 -0.33 -14.42 16 22 C 0.14 2.35 5.63 -4.04 -0.02 2.32 16 23 C -0.05 -0.68 5.91 -27.88 -0.16 -0.85 16 24 C 0.09 1.17 6.49 -82.41 -0.53 0.63 16 25 C -0.27 -2.87 10.72 -40.01 -0.43 -3.30 16 26 C 0.05 0.46 11.99 -17.22 -0.21 0.25 16 27 N -0.48 -5.00 7.36 30.45 0.22 -4.78 16 28 H 0.44 3.08 8.96 -182.60 -1.64 1.44 16 29 N -0.28 -4.19 12.67 33.67 0.43 -3.76 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 1.67 5.88 -51.93 -0.31 1.37 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.09 1.85 5.88 -51.93 -0.31 1.55 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.41 10.61 7.58 -40.82 -0.31 10.30 16 40 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.40 6.77 8.36 -40.82 -0.34 6.43 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.09 0.94 8.12 -51.93 -0.42 0.52 16 46 H 0.15 1.25 8.06 -52.48 -0.42 0.83 16 47 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 393.51 15.07 5.93 5.93 Total: -1.00 -33.84 393.51 -7.97 -41.81 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: -8.33 Total: 19.41 kcal Atomic # 6 Polarization: 18.00 SS G_CDS: -0.71 Total: 17.28 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: 0.70 Total: -62.42 kcal Atomic # 8 Polarization: -37.10 SS G_CDS: -0.54 Total: -37.63 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.84 -7.97 -41.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180782286.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.866 kcal (2) G-P(sol) polarization free energy of solvation -33.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds